The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT906461	Bordetella hinzii strain NCTC13200 chromosome 1	4913806	1585990	1650055	4913806	terminase,capsid,portal,transposase,tail,protease,head	Acidithiobacillus_phage(28.21%)	67	NA	NA
WP_029578572.1|1585990_1588525_-	site-specific DNA-methyltransferase	NA	Q1MVP0	Enterobacteria_phage	26.7	2.4e-24
WP_029578571.1|1588604_1588808_-	helix-turn-helix domain-containing protein	NA	A0A1B1IUF9	uncultured_Mediterranean_phage	51.7	4.0e-15
WP_029578570.1|1588988_1589192_+	hypothetical protein	NA	NA	NA	NA	NA
WP_144417584.1|1589200_1589689_+	DUF3489 domain-containing protein	NA	NA	NA	NA	NA
WP_029578568.1|1590318_1592466_-	AAA family ATPase	NA	Q9JMN6	Wolbachia_phage	41.8	4.4e-104
WP_029578567.1|1592462_1592708_-	hypothetical protein	NA	NA	NA	NA	NA
WP_048940635.1|1592704_1592929_-	hypothetical protein	NA	A0A221SAQ3	Ralstonia_phage	39.3	7.0e-05
WP_144417583.1|1593582_1593957_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029578564.1|1594146_1594608_+	DUF2924 domain-containing protein	NA	K4I3X1	Acidithiobacillus_phage	56.8	9.0e-39
WP_029578563.1|1594604_1595945_+	recombinase family protein	NA	K4ICM1	Acidithiobacillus_phage	55.8	1.8e-132
WP_029578562.1|1595941_1596394_+	hypothetical protein	NA	K4HZX2	Acidithiobacillus_phage	53.2	1.4e-31
WP_155272811.1|1596561_1596708_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029578561.1|1596712_1597093_-	type II toxin-antitoxin system death-on-curing family toxin	NA	A0A1B3AYM0	Gordonia_phage	54.7	1.0e-08
WP_029578560.1|1597096_1597327_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029577153.1|1598021_1599056_+|transposase	IS630 family transposase	transposase	S5VXX4	Leptospira_phage	32.0	3.3e-41
WP_029577187.1|1599133_1600255_+	Fic family protein	NA	NA	NA	NA	NA
WP_029577188.1|1600342_1600561_+	helix-turn-helix domain-containing protein	NA	A0A0K0N7A4	Gordonia_phage	55.6	8.1e-06
WP_029577189.1|1600544_1601162_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029577190.1|1601679_1602534_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032959779.1|1602550_1603225_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_029577192.1|1603215_1604004_-	TIGR04255 family protein	NA	NA	NA	NA	NA
WP_029577193.1|1604173_1606012_+	N-6 DNA methylase	NA	A0A220A2U4	Liberibacter_phage	32.1	2.6e-60
WP_032959782.1|1606008_1607292_+	restriction endonuclease subunit S	NA	E3T4D5	Cafeteria_roenbergensis_virus	27.8	4.5e-11
WP_029577195.1|1607288_1610228_+	HsdR family type I site-specific deoxyribonuclease	NA	A0A220A398	Liberibacter_phage	29.8	9.1e-76
WP_029577196.1|1610329_1610599_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_028989138.1|1610613_1611318_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029577197.1|1611340_1612495_+	sigma-70 family RNA polymerase sigma factor	NA	F4YCU2	Synechococcus_phage	38.5	6.8e-35
WP_029577198.1|1612544_1614401_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029577200.1|1618334_1618982_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029577202.1|1620674_1620881_-	hypothetical protein	NA	A0A2H4JCJ9	uncultured_Caudovirales_phage	77.9	3.8e-21
WP_029577203.1|1620891_1622859_-|terminase	phage terminase large subunit family protein	terminase	A0A2H4JIC6	uncultured_Caudovirales_phage	87.1	0.0e+00
WP_029577204.1|1622858_1623389_-	hypothetical protein	NA	A0A2H4JCL4	uncultured_Caudovirales_phage	80.7	1.5e-69
WP_029577205.1|1623566_1623755_+	hypothetical protein	NA	A0A1X9I6B9	Streptococcus_phage	50.0	1.3e-07
WP_029577206.1|1623832_1624330_+	DUF3489 domain-containing protein	NA	A0A2H4JE21	uncultured_Caudovirales_phage	71.7	8.0e-33
WP_029577207.1|1624425_1624644_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029577208.1|1624711_1625080_+	hypothetical protein	NA	K4ICP1	Acidithiobacillus_phage	72.5	5.5e-47
WP_032959783.1|1625043_1626309_-	site-specific DNA-methyltransferase	NA	K4HZA5	Acidithiobacillus_phage	83.5	1.8e-209
WP_029577210.1|1627441_1627846_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172899585.1|1627838_1628006_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172899586.1|1628204_1628690_-	hypothetical protein	NA	K4ICN3	Acidithiobacillus_phage	74.0	2.8e-59
WP_029577212.1|1628974_1631161_-	AAA family ATPase	NA	A0A1B2LRQ1	Wolbachia_phage	33.2	3.5e-104
WP_029577213.1|1631160_1631916_-	hypothetical protein	NA	K4HZA0	Acidithiobacillus_phage	62.3	5.2e-84
WP_029577214.1|1631926_1632283_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029577215.1|1632279_1633956_-	DEAD/DEAH box helicase	NA	A0A1B1IW48	uncultured_Mediterranean_phage	29.2	9.9e-35
WP_029577216.1|1633970_1634567_-	hypothetical protein	NA	K4ICM8	Acidithiobacillus_phage	60.8	2.3e-63
WP_029577217.1|1634578_1635436_-	ATP-binding protein	NA	K4HZX9	Acidithiobacillus_phage	68.4	2.3e-104
WP_029577218.1|1635432_1635714_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029577219.1|1635719_1636190_-	hypothetical protein	NA	K4HZ96	Acidithiobacillus_phage	44.3	2.7e-30
WP_029577220.1|1636186_1636399_-	helix-turn-helix domain-containing protein	NA	A0A0K0N7A4	Gordonia_phage	52.4	3.0e-05
WP_029577221.1|1636587_1636812_-	DUF2188 domain-containing protein	NA	E8ZD70	Streptococcus_phage	56.8	2.4e-13
WP_029577222.1|1636877_1637834_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029577223.1|1637842_1638649_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029577224.1|1638821_1640177_+	recombinase family protein	NA	K4ICM1	Acidithiobacillus_phage	57.9	1.0e-143
WP_029577225.1|1640173_1640605_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029577226.1|1640620_1641124_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_029577227.1|1641120_1641399_-	DUF1778 domain-containing protein	NA	NA	NA	NA	NA
WP_029577228.1|1641847_1642126_-|head,tail	phage gp6-like head-tail connector protein	head,tail	B5WZS4	Pseudomonas_phage	33.3	8.8e-05
WP_029577229.1|1642122_1642458_-|head	phage head closure protein	head	A0A1J0GUY4	Halomonas_phage	39.1	1.4e-12
WP_029577230.1|1642596_1644093_-|terminase	terminase	terminase	K7PLY2	Enterobacterial_phage	62.7	1.6e-177
WP_029577231.1|1644089_1644548_-	hypothetical protein	NA	NA	NA	NA	NA
WP_144417589.1|1644598_1645000_-	HNH endonuclease	NA	NA	NA	NA	NA
WP_029577233.1|1645032_1646247_-|portal	phage portal protein	portal	A0A2K5B287	Erysipelothrix_phage	39.8	4.0e-70
WP_029577234.1|1646240_1646786_-|head,protease	HK97 family phage prohead protease	head,protease	B4UTP2	Rhizobium_phage	49.0	5.0e-28
WP_029577235.1|1646801_1648010_-|capsid	phage major capsid protein	capsid	G8EXZ9	Synechococcus_phage	32.6	5.0e-36
WP_029577236.1|1648268_1649420_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_032959784.1|1649409_1649835_-	DNA primase	NA	A0A2H5BLM3	Streptomyces_phage	50.0	6.4e-07
WP_029577238.1|1649848_1650055_-	AlpA family transcriptional regulator	NA	B7SYF9	Stenotrophomonas_phage	50.0	3.9e-10
>prophage 2
NZ_LT906461	Bordetella hinzii strain NCTC13200 chromosome 1	4913806	2899067	2906817	4913806	protease	uncultured_Caudovirales_phage(16.67%)	7	NA	NA
WP_029580525.1|2899067_2899721_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	1.9e-10
WP_029580524.1|2899847_2902277_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.4	2.0e-222
WP_029580523.1|2902442_2903741_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	54.3	8.3e-130
WP_029580522.1|2903845_2904499_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	56.4	1.5e-55
WP_029580521.1|2904501_2905812_-	trigger factor	NA	NA	NA	NA	NA
WP_029580520.1|2906017_2906557_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.1e-22
WP_029580519.1|2906610_2906817_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	7.4e-17
>prophage 3
NZ_LT906461	Bordetella hinzii strain NCTC13200 chromosome 1	4913806	2958019	3009465	4913806	integrase,terminase,capsid	Pseudomonas_phage(32.56%)	69	2951648:2951665	3012605:3012622
2951648:2951665	attL	GCGGTCACGATGGCCAGC	NA	NA	NA	NA
WP_029580468.1|2958019_2959675_+	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	48.9	5.7e-35
WP_029580467.1|2959813_2960302_+	membrane protein	NA	NA	NA	NA	NA
WP_144417577.1|2960488_2961445_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029580465.1|2961758_2962451_+	SOS response-associated peptidase family protein	NA	A4JX27	Burkholderia_virus	34.7	1.8e-14
WP_080666588.1|2962839_2963016_+	type II toxin-antitoxin system HicA family toxin	NA	A0A0R6PGU2	Moraxella_phage	60.0	1.3e-09
WP_029580464.1|2963074_2963491_+	antitoxin	NA	A0A0R6PH90	Moraxella_phage	57.5	4.6e-34
WP_144417576.1|2963490_2963988_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080666598.1|2963963_2964470_-	DUF2514 family protein	NA	Q3HQV1	Burkholderia_phage	42.2	2.5e-10
WP_029580462.1|2964496_2964988_-	hypothetical protein	NA	I6NSS1	Burkholderia_phage	59.9	2.0e-44
WP_029580461.1|2964993_2965434_-	hypothetical protein	NA	A0A0U5LBV3	unidentified_phage	34.8	9.6e-14
WP_029580460.1|2965533_2966133_-	hypothetical protein	NA	A0A291LAV4	Bordetella_phage	35.1	1.2e-06
WP_029580459.1|2966160_2968146_-	hypothetical protein	NA	G9BWE7	Planktothrix_phage	47.8	2.4e-11
WP_029580458.1|2968145_2968811_-	DUF2612 domain-containing protein	NA	A0A0N9SSD8	Pseudomonas_phage	34.6	6.5e-30
WP_029580457.1|2968810_2970262_-	hypothetical protein	NA	A0A0N9SH53	Pseudomonas_phage	36.2	4.1e-77
WP_029580456.1|2970286_2970655_-	hypothetical protein	NA	E5AGC2	Erwinia_phage	40.9	3.0e-13
WP_029580455.1|2970654_2971353_-	hypothetical protein	NA	A0A2H4J8H6	uncultured_Caudovirales_phage	33.2	1.1e-14
WP_029580454.1|2971349_2972270_-	hypothetical protein	NA	E5AGC0	Erwinia_phage	33.9	3.3e-40
WP_029580453.1|2972256_2972589_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029580452.1|2972585_2973155_-	hypothetical protein	NA	I3PGV3	Xanthomonas_phage	26.6	3.3e-06
WP_029580451.1|2973164_2975606_-	tape measure protein	NA	A0A0R6PD92	Moraxella_phage	21.1	8.0e-17
WP_029580450.1|2975754_2976240_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029580449.1|2976239_2976668_-	DUF3277 family protein	NA	A0A2K9V3K6	Faecalibacterium_phage	40.9	4.2e-22
WP_029580448.1|2976680_2978039_-	DUF3383 family protein	NA	A0A0N9SJA3	Pseudomonas_phage	40.9	3.0e-82
WP_029580447.1|2978102_2978627_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029580446.1|2978800_2979169_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029580445.1|2979172_2979625_-	hypothetical protein	NA	A0A2K9V3I1	Faecalibacterium_phage	34.4	7.1e-12
WP_029580444.1|2979614_2979989_-	DUF4054 domain-containing protein	NA	NA	NA	NA	NA
WP_029580443.1|2979991_2980372_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029580442.1|2980371_2981331_-	DUF2184 domain-containing protein	NA	A0A0N9SG07	Pseudomonas_phage	39.2	4.3e-59
WP_029580441.1|2981392_2981848_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029580440.1|2981847_2982930_-	DUF2213 domain-containing protein	NA	E5AGA6	Erwinia_phage	41.0	5.6e-55
WP_032959802.1|2982939_2983779_-|capsid	minor capsid protein	capsid	I3PGT9	Xanthomonas_phage	38.2	7.7e-36
WP_032959803.1|2983720_2985001_-	DUF1073 domain-containing protein	NA	A0A2H4N7B7	Pectobacterium_phage	24.5	1.2e-16
WP_029580437.1|2985000_2986584_-|terminase	phage terminase large subunit	terminase	B5AX37	Iodobacteriophage	45.7	1.2e-111
WP_029580436.1|2986534_2987011_-	DUF2280 domain-containing protein	NA	A0A125RNL6	Pseudomonas_phage	59.9	2.2e-35
WP_029580435.1|2987127_2987724_+	DUF4145 domain-containing protein	NA	M1PSB6	Streptococcus_phage	38.4	5.8e-30
WP_029580434.1|2987720_2988329_-	hypothetical protein	NA	A0A1B0VRJ1	Pseudomonas_phage	66.5	1.0e-66
WP_029580433.1|2988338_2989130_-	DNA adenine methylase	NA	Q5ZQW7	Pseudomonas_phage	79.0	2.0e-126
WP_144417575.1|2989288_2989876_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029580431.1|2989925_2990552_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029580430.1|2990544_2991039_-	RusA family crossover junction endodeoxyribonuclease	NA	A9YWY9	Burkholderia_phage	52.7	8.2e-30
WP_029580429.1|2991035_2991260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029580428.1|2991256_2992402_-	DUF1376 domain-containing protein	NA	H2BD69	Pseudomonas_phage	58.2	7.7e-39
WP_142098757.1|2992474_2992660_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029580427.1|2992669_2993278_-	hypothetical protein	NA	A0A218M303	Acidovorax_phage	39.2	8.0e-35
WP_029580426.1|2993358_2993610_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029580425.1|2993639_2995568_-	DNA cytosine methyltransferase	NA	Q9ZXI4	Pseudomonas_virus	50.6	1.4e-154
WP_029580424.1|2995564_2996164_-	hypothetical protein	NA	A0A0S2SYA8	Pseudomonas_phage	50.0	5.1e-42
WP_142098760.1|2996222_2996417_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029580423.1|2996911_2997355_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_029580422.1|2997479_2997794_+	TM2 domain-containing protein	NA	NA	NA	NA	NA
WP_080666597.1|2998051_2998306_+	hypothetical protein	NA	NA	NA	NA	NA
WP_048940608.1|2998400_2998901_+	hypothetical protein	NA	A0A0S3UG68	Pseudomonas_phage	47.0	1.0e-35
WP_029580419.1|2998897_2999098_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029580418.1|2999094_2999385_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029580417.1|2999381_2999582_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029580416.1|2999598_3000399_+	PD-(D/E)XK nuclease family protein	NA	J7HXJ4	Pseudomonas_phage	48.9	3.7e-56
WP_029580415.1|3000402_3001611_+	hypothetical protein	NA	J7HXB6	Pseudomonas_phage	53.8	1.4e-70
WP_048940607.1|3001623_3002784_+	recombination-associated protein RdgC	NA	A0A218M310	Acidovorax_phage	38.1	1.1e-53
WP_029580413.1|3002793_3004575_+	AAA family ATPase	NA	J7HXJ7	Pseudomonas_phage	36.3	6.5e-77
WP_029580412.1|3004593_3004947_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029580411.1|3004943_3005990_+	hypothetical protein	NA	A0A2D2W2F4	Stenotrophomonas_phage	52.6	7.1e-07
WP_144417574.1|3005986_3006235_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029580409.1|3006237_3006519_+	hypothetical protein	NA	K4JS57	Caulobacter_phage	33.3	6.3e-11
WP_029580408.1|3006522_3007317_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	61.1	1.0e-05
WP_029580407.1|3007488_3007755_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029580406.1|3007747_3007957_+	hypothetical protein	NA	H2BDE9	Pseudomonas_virus	41.7	4.9e-08
WP_029580405.1|3007957_3008215_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029580404.1|3008223_3009465_+|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	A0A1B0VMI6	Pseudomonas_phage	38.9	5.2e-65
3012605:3012622	attR	GCGGTCACGATGGCCAGC	NA	NA	NA	NA
