assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900186865.1_49243_F02	NZ_LT906480	Stenotrophomonas maltophilia strain NCTC10257 chromosome 1	1	24848-24949	1	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	Orphan	GTTGCCGGCCAGCGGCCGGCACTACC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	NA|90aa|up_8|NZ_LT906480.1_15972_16242_+,NA|97aa|up_5|NZ_LT906480.1_18329_18620_+,NA|152aa|up_4|NZ_LT906480.1_18631_19087_+,NA|113aa|down_0|NZ_LT906480.1_24951_25290_-,NA|133aa|down_1|NZ_LT906480.1_25437_25836_+,NA|131aa|down_4|NZ_LT906480.1_29482_29875_-,NA|68aa|down_7|NZ_LT906480.1_33264_33468_+,NA|70aa|down_9|NZ_LT906480.1_34061_34271_+	NA|487aa|up_9|NZ_LT906480.1_14471_15932_+	PRK01642, cls, cardiolipin synthetase; Reviewed	NA|90aa|up_8|NZ_LT906480.1_15972_16242_+	NA	NA|248aa|up_7|NZ_LT906480.1_16251_16995_+	PRK05265, PRK05265, pyridoxine 5'-phosphate synthase; Provisional	NA|364aa|up_6|NZ_LT906480.1_17096_18188_+	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B	NA|97aa|up_5|NZ_LT906480.1_18329_18620_+	NA	NA|152aa|up_4|NZ_LT906480.1_18631_19087_+	NA	NA|237aa|up_3|NZ_LT906480.1_19149_19860_-	pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily	NA|339aa|up_2|NZ_LT906480.1_19968_20985_-	PRK09293, PRK09293, class 1 fructose-bisphosphatase	NA|401aa|up_1|NZ_LT906480.1_21327_22530_-	PRK09257, PRK09257, aromatic amino acid transaminase	NA|698aa|up_0|NZ_LT906480.1_22701_24795_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|113aa|down_0|NZ_LT906480.1_24951_25290_-	NA	NA|133aa|down_1|NZ_LT906480.1_25437_25836_+	NA	NA|307aa|down_2|NZ_LT906480.1_26000_26921_+	cd00789, KU_like, Ku-core domain, Ku-like subfamily; composed of prokaryotic homologs of the eukaryotic DNA binding protein Ku	NA|829aa|down_3|NZ_LT906480.1_26924_29411_+	PRK05972, ligD, ATP-dependent DNA ligase; Reviewed	NA|131aa|down_4|NZ_LT906480.1_29482_29875_-	NA	NA|397aa|down_5|NZ_LT906480.1_31208_32399_+	PRK09692, PRK09692, integrase; Provisional	NA|91aa|down_6|NZ_LT906480.1_32995_33268_+	pfam05930, Phage_AlpA, Prophage CP4-57 regulatory protein (AlpA)	NA|68aa|down_7|NZ_LT906480.1_33264_33468_+	NA	NA|96aa|down_8|NZ_LT906480.1_33477_33765_+	pfam04606, Ogr_Delta, Ogr/Delta-like zinc finger	NA|70aa|down_9|NZ_LT906480.1_34061_34271_+	NA
GCF_900186865.1_49243_F02	NZ_LT906480	Stenotrophomonas maltophilia strain NCTC10257 chromosome 1	2	546992-547127	2	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	Orphan	AATGCGTGTCGACCAAGGTCGACACCTACCGGGGGGCCT	39	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	NA|163aa|up_8|NZ_LT906480.1_540056_540545_-,NA|59aa|up_3|NZ_LT906480.1_543672_543849_+,NA|88aa|down_2|NZ_LT906480.1_550338_550602_-	NA|92aa|up_9|NZ_LT906480.1_539767_540043_-	pfam13223, DUF4031, Protein of unknown function (DUF4031)	NA|163aa|up_8|NZ_LT906480.1_540056_540545_-	NA	NA|317aa|up_7|NZ_LT906480.1_540643_541594_-	PRK09041, motB, motility protein MotB	NA|285aa|up_6|NZ_LT906480.1_541597_542452_-	PRK09110, PRK09110, flagellar motor stator protein MotA	NA|156aa|up_5|NZ_LT906480.1_542542_543010_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|126aa|up_4|NZ_LT906480.1_543150_543528_+	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|59aa|up_3|NZ_LT906480.1_543672_543849_+	NA	NA|160aa|up_2|NZ_LT906480.1_543959_544439_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|435aa|up_1|NZ_LT906480.1_544588_545893_+	PRK00711, PRK00711, D-amino acid dehydrogenase	NA|356aa|up_0|NZ_LT906480.1_545871_546939_+	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases	NA|663aa|down_0|NZ_LT906480.1_547933_549922_+	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional	NA|97aa|down_1|NZ_LT906480.1_549965_550256_+	pfam11607, DUF3247, Protein of unknown function (DUF3247)	NA|88aa|down_2|NZ_LT906480.1_550338_550602_-	NA	NA|355aa|down_3|NZ_LT906480.1_550758_551823_+	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]	NA|234aa|down_4|NZ_LT906480.1_551819_552521_+	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like	NA|228aa|down_5|NZ_LT906480.1_552517_553201_+	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only]	NA|403aa|down_6|NZ_LT906480.1_553277_554486_-	PRK07967, PRK07967, beta-ketoacyl-ACP synthase I	NA|172aa|down_7|NZ_LT906480.1_554485_555001_-	PRK05174, PRK05174, bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA|365aa|down_8|NZ_LT906480.1_555191_556286_+	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|304aa|down_9|NZ_LT906480.1_556584_557496_-	cd07739, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain
GCF_900186865.1_49243_F02	NZ_LT906480	Stenotrophomonas maltophilia strain NCTC10257 chromosome 1	3	856401-856505	3	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	Orphan	TTTGCCGGCCAGCGGCCGGCACTACC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	NA|109aa|up_3|NZ_LT906480.1_853572_853899_-,NA|140aa|down_0|NZ_LT906480.1_856568_856988_-,NA|219aa|down_3|NZ_LT906480.1_858991_859648_+	NA|185aa|up_9|NZ_LT906480.1_847158_847713_-	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	NA|312aa|up_8|NZ_LT906480.1_847709_848645_-	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|194aa|up_7|NZ_LT906480.1_848641_849223_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|774aa|up_6|NZ_LT906480.1_849554_851876_+	pfam07793, DUF1631, Protein of unknown function (DUF1631)	NA|360aa|up_5|NZ_LT906480.1_851927_853007_+	cd05304, Rubrum_tdh, Rubrum transdehydrogenase NAD-binding and catalytic domains	NA|154aa|up_4|NZ_LT906480.1_853107_853569_-	pfam11304, DUF3106, Protein of unknown function (DUF3106)	NA|109aa|up_3|NZ_LT906480.1_853572_853899_-	NA	NA|185aa|up_2|NZ_LT906480.1_853895_854450_-	PRK09047, PRK09047, RNA polymerase factor sigma-70; Validated	NA|107aa|up_1|NZ_LT906480.1_854578_854899_+	pfam12769, PNTB_4TM, 4TM region of pyridine nucleotide transhydrogenase, mitoch	NA|487aa|up_0|NZ_LT906480.1_854895_856356_+	pfam02233, PNTB, NAD(P) transhydrogenase beta subunit	NA|140aa|down_0|NZ_LT906480.1_856568_856988_-	NA	NA|184aa|down_1|NZ_LT906480.1_857110_857662_+	TIGR03406, FeS_long_SufT, probable FeS assembly SUF system protein SufT	NA|365aa|down_2|NZ_LT906480.1_857721_858816_+	PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional	NA|219aa|down_3|NZ_LT906480.1_858991_859648_+	NA	NA|112aa|down_4|NZ_LT906480.1_859644_859980_+	pfam13601, HTH_34, Winged helix DNA-binding domain	NA|341aa|down_5|NZ_LT906480.1_859981_861004_+	pfam01551, Peptidase_M23, Peptidase family M23	NA|581aa|down_6|NZ_LT906480.1_861382_863125_+	cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13	NA|162aa|down_7|NZ_LT906480.1_863245_863731_-	COG0252, AnsB, L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|112aa|down_8|NZ_LT906480.1_863810_864146_-	pfam09842, DUF2069, Predicted membrane protein (DUF2069)	NA|198aa|down_9|NZ_LT906480.1_864142_864736_-	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional
GCF_900186865.1_49243_F02	NZ_LT906480	Stenotrophomonas maltophilia strain NCTC10257 chromosome 1	4	1035825-1035929	4	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	Orphan	TGGTTCATGCCGCCAGTTTTCCCGC	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	NA|47aa|up_9|NZ_LT906480.1_1029952_1030093_-,NA|170aa|up_8|NZ_LT906480.1_1030134_1030644_-,NA|252aa|up_7|NZ_LT906480.1_1030643_1031399_-,NA|74aa|up_6|NZ_LT906480.1_1031402_1031624_-,NA|159aa|up_5|NZ_LT906480.1_1031620_1032097_-,NA|165aa|up_3|NZ_LT906480.1_1032636_1033131_-,NA|315aa|up_2|NZ_LT906480.1_1033292_1034237_-,NA|114aa|up_1|NZ_LT906480.1_1034262_1034604_-,NA|372aa|up_0|NZ_LT906480.1_1034626_1035742_-,NA|87aa|down_5|NZ_LT906480.1_1041800_1042061_-,NA|140aa|down_9|NZ_LT906480.1_1043677_1044097_-	NA|47aa|up_9|NZ_LT906480.1_1029952_1030093_-	NA	NA|170aa|up_8|NZ_LT906480.1_1030134_1030644_-	NA	NA|252aa|up_7|NZ_LT906480.1_1030643_1031399_-	NA	NA|74aa|up_6|NZ_LT906480.1_1031402_1031624_-	NA	NA|159aa|up_5|NZ_LT906480.1_1031620_1032097_-	NA	NA|178aa|up_4|NZ_LT906480.1_1032093_1032627_-	pfam07030, DUF1320, Protein of unknown function (DUF1320)	NA|165aa|up_3|NZ_LT906480.1_1032636_1033131_-	NA	NA|315aa|up_2|NZ_LT906480.1_1033292_1034237_-	NA	NA|114aa|up_1|NZ_LT906480.1_1034262_1034604_-	NA	NA|372aa|up_0|NZ_LT906480.1_1034626_1035742_-	NA	NA|190aa|down_0|NZ_LT906480.1_1036128_1036698_-	pfam05069, Phage_tail_S, Phage virion morphogenesis family	NA|426aa|down_1|NZ_LT906480.1_1036697_1037975_-	pfam04233, Phage_Mu_F, Phage Mu protein F like protein	NA|509aa|down_2|NZ_LT906480.1_1037978_1039505_-	pfam06074, DUF935, Protein of unknown function (DUF935)	NA|579aa|down_3|NZ_LT906480.1_1039501_1041238_-	COG4373, COG4373, Mu-like prophage FluMu protein gp28 [General function prediction only]	NA|183aa|down_4|NZ_LT906480.1_1041238_1041787_-	pfam11985, DUF3486, Protein of unknown function (DUF3486)	NA|87aa|down_5|NZ_LT906480.1_1041800_1042061_-	NA	NA|106aa|down_6|NZ_LT906480.1_1042120_1042438_-	COG4093, COG4093, Uncharacterized protein conserved in bacteria [Function unknown]	NA|169aa|down_7|NZ_LT906480.1_1042434_1042941_-	PHA00276, PHA00276, phage lambda Rz-like lysis protein	NA|173aa|down_8|NZ_LT906480.1_1042940_1043459_-	cd16900, endolysin_R21-like, endolysin R21-like proteins	NA|140aa|down_9|NZ_LT906480.1_1043677_1044097_-	NA
GCF_900186865.1_49243_F02	NZ_LT906480	Stenotrophomonas maltophilia strain NCTC10257 chromosome 1	5	1606310-1606399	5	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	Orphan	CGGTCGACTCTACAGGTGCATCGGCGGG	28	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	NA|309aa|up_4|NZ_LT906480.1_1599652_1600579_-,NA|137aa|down_7|NZ_LT906480.1_1615839_1616250_+	NA|376aa|up_9|NZ_LT906480.1_1592613_1593741_-	cd07425, MPP_Shelphs, Shewanella-like phosphatases, metallophosphatase domain	NA|150aa|up_8|NZ_LT906480.1_1593814_1594264_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|406aa|up_7|NZ_LT906480.1_1594342_1595560_+	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|472aa|up_6|NZ_LT906480.1_1595655_1597071_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|750aa|up_5|NZ_LT906480.1_1597357_1599607_+	PRK13524, PRK13524, FepA family TonB-dependent siderophore receptor	NA|309aa|up_4|NZ_LT906480.1_1599652_1600579_-	NA	NA|327aa|up_3|NZ_LT906480.1_1600800_1601781_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|225aa|up_2|NZ_LT906480.1_1602378_1603053_-	PRK11617, PRK11617, deoxyribonuclease V	NA|250aa|up_1|NZ_LT906480.1_1603147_1603897_+	PRK14115, gpmA, 2,3-diphosphoglycerate-dependent phosphoglycerate mutase	NA|698aa|up_0|NZ_LT906480.1_1604058_1606152_+	cd08662, M13, Peptidase family M13 includes neprilysin and endothelin-converting enzyme I	NA|206aa|down_0|NZ_LT906480.1_1606428_1607046_-	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]	NA|1155aa|down_1|NZ_LT906480.1_1607090_1610555_-	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	NA|182aa|down_2|NZ_LT906480.1_1610704_1611250_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|286aa|down_3|NZ_LT906480.1_1611345_1612203_-	COG2961, ComJ, Protein involved in catabolism of external DNA [General function prediction only]	NA|242aa|down_4|NZ_LT906480.1_1612238_1612964_+	PRK11083, PRK11083, DNA-binding response regulator CreB; Provisional	NA|487aa|down_5|NZ_LT906480.1_1612967_1614428_+	PRK11100, PRK11100, sensory histidine kinase CreC; Provisional	NA|440aa|down_6|NZ_LT906480.1_1614509_1615829_+	PRK11715, PRK11715, cell envelope integrity protein CreD	NA|137aa|down_7|NZ_LT906480.1_1615839_1616250_+	NA	NA|526aa|down_8|NZ_LT906480.1_1616419_1617997_+	cd08015, M28_like, M28 Zn-peptidase-like; uncharacterized subfamily	NA|468aa|down_9|NZ_LT906480.1_1618150_1619554_+	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed
GCF_900186865.1_49243_F02	NZ_LT906480	Stenotrophomonas maltophilia strain NCTC10257 chromosome 1	6	1996307-1996453	6	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	Orphan	TGCCGGCCAGCGGCCGGCACTACC	24	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	NA|166aa|up_2|NZ_LT906480.1_1993818_1994316_+,NA	NA|172aa|up_9|NZ_LT906480.1_1987159_1987675_+	COG3317, NlpB, Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]	NA|108aa|up_8|NZ_LT906480.1_1987880_1988204_-	pfam11953, DUF3470, Domain of unknown function (DUF3470)	NA|475aa|up_7|NZ_LT906480.1_1988396_1989821_+	cd17359, MFS_XylE_like, D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily	NA|460aa|up_6|NZ_LT906480.1_1990197_1991577_+	PRK11623, pcnB, poly(A) polymerase I; Provisional	NA|162aa|up_5|NZ_LT906480.1_1991580_1992066_+	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]	NA|272aa|up_4|NZ_LT906480.1_1992100_1992916_+	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	NA|280aa|up_3|NZ_LT906480.1_1992912_1993752_+	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed	NA|166aa|up_2|NZ_LT906480.1_1993818_1994316_+	NA	NA|127aa|up_1|NZ_LT906480.1_1994403_1994784_+	PRK05449, PRK05449, aspartate alpha-decarboxylase; Provisional	NA|505aa|up_0|NZ_LT906480.1_1994780_1996295_+	PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed	NA|188aa|down_0|NZ_LT906480.1_1996470_1997034_-	COG4567, COG4567, Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]	NA|409aa|down_1|NZ_LT906480.1_1997030_1998257_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|422aa|down_2|NZ_LT906480.1_1998371_1999637_+	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA|250aa|down_3|NZ_LT906480.1_1999617_2000367_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|216aa|down_4|NZ_LT906480.1_2000567_2001215_+	PRK09483, PRK09483, response regulator; Provisional	NA|220aa|down_5|NZ_LT906480.1_2001502_2002162_-	PRK05718, PRK05718, keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional	NA|639aa|down_6|NZ_LT906480.1_2002368_2004285_-	PRK09054, PRK09054, phosphogluconate dehydratase; Validated	NA|241aa|down_7|NZ_LT906480.1_2004343_2005066_-	cd01400, 6PGL, 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate	NA|336aa|down_8|NZ_LT906480.1_2005062_2006070_-	PRK00292, glk, glucokinase; Provisional	NA|479aa|down_9|NZ_LT906480.1_2006066_2007503_-	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated
GCF_900186865.1_49243_F02	NZ_LT906480	Stenotrophomonas maltophilia strain NCTC10257 chromosome 1	7	2476710-2476816	7	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	Orphan	ATCCACGCATGCCGTGGATCTACC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	NA|113aa|up_4|NZ_LT906480.1_2467100_2467439_+,NA|72aa|down_0|NZ_LT906480.1_2477455_2477671_-,NA|157aa|down_5|NZ_LT906480.1_2481336_2481807_-,NA|128aa|down_9|NZ_LT906480.1_2485696_2486080_-	NA|136aa|up_9|NZ_LT906480.1_2463895_2464303_-	PRK12629, flgC, flagellar basal body rod protein FlgC; Provisional	NA|132aa|up_8|NZ_LT906480.1_2464306_2464702_-	PRK12620, flgB, flagellar basal body rod protein FlgB; Provisional	NA|315aa|up_7|NZ_LT906480.1_2464840_2465785_-	cd19924, REC_CheV-like, phosphoacceptor receiver (REC) domain of chemotaxis protein CheV and similar proteins	NA|219aa|up_6|NZ_LT906480.1_2466066_2466723_+	PRK12617, flgA, flagellar basal body P-ring formation protein FlgA	NA|102aa|up_5|NZ_LT906480.1_2466798_2467104_+	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM	NA|113aa|up_4|NZ_LT906480.1_2467100_2467439_+	NA	NA|407aa|up_3|NZ_LT906480.1_2467530_2468751_+	cd16943, HATPase_AtoS-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli K-12 AtoS	NA|591aa|up_2|NZ_LT906480.1_2469898_2471671_-	cd01948, EAL, EAL domain	NA|701aa|up_1|NZ_LT906480.1_2471675_2473778_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|920aa|up_0|NZ_LT906480.1_2473909_2476669_+	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|72aa|down_0|NZ_LT906480.1_2477455_2477671_-	NA	NA|397aa|down_1|NZ_LT906480.1_2477769_2478960_-	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain	NA|205aa|down_2|NZ_LT906480.1_2479123_2479738_-	PRK00218, PRK00218, lysogenization regulator HflD	NA|381aa|down_3|NZ_LT906480.1_2479734_2480877_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|154aa|down_4|NZ_LT906480.1_2480873_2481335_-	cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function	NA|157aa|down_5|NZ_LT906480.1_2481336_2481807_-	NA	NA|109aa|down_6|NZ_LT906480.1_2481919_2482246_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|271aa|down_7|NZ_LT906480.1_2482381_2483194_-	COG3570, StrB, Streptomycin 6-kinase [Defense mechanisms]	NA|762aa|down_8|NZ_LT906480.1_2483332_2485618_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|128aa|down_9|NZ_LT906480.1_2485696_2486080_-	NA
GCF_900186865.1_49243_F02	NZ_LT906480	Stenotrophomonas maltophilia strain NCTC10257 chromosome 1	8	2778991-2779091	8	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	Orphan	TGCCGGCCAGCGGCCGGCACTACCCTGCAC	30	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	NA,NA	NA|158aa|up_9|NZ_LT906480.1_2770626_2771100_+	pfam03203, MerC, MerC mercury resistance protein	NA|301aa|up_8|NZ_LT906480.1_2771379_2772282_-	cd08478, PBP2_CrgA, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA, contains the type 2 periplasmic binding domain	NA|268aa|up_7|NZ_LT906480.1_2772400_2773204_+	PRK11172, dkgB, 2,5-didehydrogluconate reductase DkgB	NA|316aa|up_6|NZ_LT906480.1_2773215_2774163_+	TIGR03571, lucif_BA3436, luciferase-type oxidoreductase, BA3436 family	NA|313aa|up_5|NZ_LT906480.1_2774182_2775121_+	pfam04199, Cyclase, Putative cyclase	NA|108aa|up_4|NZ_LT906480.1_2775117_2775441_+	COG3479, COG3479, Phenolic acid decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|126aa|up_3|NZ_LT906480.1_2775567_2775945_+	pfam04234, CopC, CopC domain	NA|294aa|up_2|NZ_LT906480.1_2775955_2776837_+	COG1276, PcoD, Putative copper export protein [Inorganic ion transport and metabolism]	NA|233aa|up_1|NZ_LT906480.1_2776882_2777581_+	TIGR01387, Transcriptional_regulatory_protein_PcoR, heavy metal response regulator	NA|456aa|up_0|NZ_LT906480.1_2777577_2778945_+	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase	NA|248aa|down_0|NZ_LT906480.1_2780128_2780872_+	cd05362, THN_reductase-like_SDR_c, tetrahydroxynaphthalene/trihydroxynaphthalene reductase-like, classical (c) SDRs	NA|1026aa|down_1|NZ_LT906480.1_2781004_2784082_-	COG3696, COG3696, Putative silver efflux pump [Inorganic ion transport and metabolism]	NA|391aa|down_2|NZ_LT906480.1_2784078_2785251_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|416aa|down_3|NZ_LT906480.1_2785247_2786495_-	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|225aa|down_4|NZ_LT906480.1_2786557_2787232_+	PRK10643, PRK10643, two-component system response regulator PmrA	NA|460aa|down_5|NZ_LT906480.1_2787224_2788604_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|784aa|down_6|NZ_LT906480.1_2788679_2791031_-	pfam07971, Glyco_hydro_92, Glycosyl hydrolase family 92	NA|108aa|down_7|NZ_LT906480.1_2791127_2791451_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|139aa|down_8|NZ_LT906480.1_2791456_2791873_-	pfam10116, Host_attach, Protein required for attachment to host cells	NA|496aa|down_9|NZ_LT906480.1_2792353_2793841_+	PRK10642, PRK10642, proline/glycine betaine transporter ProP
GCF_900186865.1_49243_F02	NZ_LT906480	Stenotrophomonas maltophilia strain NCTC10257 chromosome 1	9	3749617-3749720	9	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	Orphan	CGGTCGTGCCGGCCGCTGGCCGGCAA	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	NA|180aa|up_6|NZ_LT906480.1_3742438_3742978_+,NA|97aa|up_5|NZ_LT906480.1_3742992_3743283_+,NA|221aa|up_1|NZ_LT906480.1_3747311_3747974_-,NA	NA|697aa|up_9|NZ_LT906480.1_3738946_3741037_+	PRK11249, katE, hydroperoxidase II; Provisional	NA|163aa|up_8|NZ_LT906480.1_3741059_3741548_+	PRK14900, valS, valyl-tRNA synthetase; Provisional	NA|247aa|up_7|NZ_LT906480.1_3741557_3742298_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|180aa|up_6|NZ_LT906480.1_3742438_3742978_+	NA	NA|97aa|up_5|NZ_LT906480.1_3742992_3743283_+	NA	NA|709aa|up_4|NZ_LT906480.1_3743372_3745499_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|321aa|up_3|NZ_LT906480.1_3745731_3746694_+	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD	NA|226aa|up_2|NZ_LT906480.1_3746698_3747376_+	pfam01551, Peptidase_M23, Peptidase family M23	NA|221aa|up_1|NZ_LT906480.1_3747311_3747974_-	NA	NA|431aa|up_0|NZ_LT906480.1_3748091_3749384_-	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|62aa|down_0|NZ_LT906480.1_3749755_3749941_-	COG3242, COG3242, Uncharacterized protein conserved in bacteria [Function unknown]	NA|288aa|down_1|NZ_LT906480.1_3750007_3750871_-	cd03405, SPFH_HflC, High frequency of lysogenization C (HflC) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|378aa|down_2|NZ_LT906480.1_3750867_3752001_-	TIGR01933, Protein_HflK, HflK protein	NA|332aa|down_3|NZ_LT906480.1_3752154_3753150_+	cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases	NA|124aa|down_4|NZ_LT906480.1_3753238_3753610_+	cd17538, REC_D1_PleD-like, first (D1) phosphoacceptor receiver (REC) domain of response regulator PleD and similar domains	NA|298aa|down_5|NZ_LT906480.1_3753698_3754592_-	PRK10266, PRK10266, curved DNA-binding protein	NA|161aa|down_6|NZ_LT906480.1_3754852_3755335_+	cd03013, PRX5_like, Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol	NA|192aa|down_7|NZ_LT906480.1_3755364_3755940_+	COG2193, Bfr, Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]	NA|794aa|down_8|NZ_LT906480.1_3756012_3758394_-	COG4953, PbpC, Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane]	NA|1636aa|down_9|NZ_LT906480.1_3758458_3763366_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]
GCF_900186865.1_49243_F02	NZ_LT906480	Stenotrophomonas maltophilia strain NCTC10257 chromosome 1	10	4127528-4127636	10	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	Orphan	CAGTGCCAACCAAGGTTGGCACCTACCAGGGC	32	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	NA,NA	NA|325aa|up_9|NZ_LT906480.1_4115948_4116923_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|579aa|up_8|NZ_LT906480.1_4116962_4118699_+	PRK08978, PRK08978, acetolactate synthase 2 catalytic subunit; Reviewed	NA|84aa|up_7|NZ_LT906480.1_4118682_4118934_+	COG3978, COG3978, Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]	NA|364aa|up_6|NZ_LT906480.1_4119030_4120122_+	PRK08813, PRK08813, threonine dehydratase; Provisional	NA|529aa|up_5|NZ_LT906480.1_4120118_4121705_+	PRK00915, PRK00915, 2-isopropylmalate synthase; Validated	NA|260aa|up_4|NZ_LT906480.1_4121715_4122495_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|473aa|up_3|NZ_LT906480.1_4122555_4123974_+	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit	NA|193aa|up_2|NZ_LT906480.1_4123973_4124552_+	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit	NA|354aa|up_1|NZ_LT906480.1_4124541_4125603_+	PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional	NA|302aa|up_0|NZ_LT906480.1_4126594_4127500_+	cd08472, PBP2_CrgA_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|1054aa|down_0|NZ_LT906480.1_4127658_4130820_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|377aa|down_1|NZ_LT906480.1_4130824_4131955_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|216aa|down_2|NZ_LT906480.1_4132769_4133417_+	COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]	NA|453aa|down_3|NZ_LT906480.1_4133433_4134792_+	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family	NA|406aa|down_4|NZ_LT906480.1_4134879_4136097_-	TIGR00909, putative_amino_acid_transporter, amino acid transporter	NA|433aa|down_5|NZ_LT906480.1_4136313_4137612_-	PRK05749, PRK05749, 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed	NA|306aa|down_6|NZ_LT906480.1_4137672_4138590_+	PRK08733, PRK08733, LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase	NA|444aa|down_7|NZ_LT906480.1_4139146_4140478_-	COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane]	NA|372aa|down_8|NZ_LT906480.1_4140458_4141574_-	cd03819, GT4_WavL-like, Vibrio cholerae WavL and similar sequences	NA|66aa|down_9|NZ_LT906480.1_4141589_4141787_-	COG4391, COG4391, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_900186865.1_49243_F02	NZ_LT906480	Stenotrophomonas maltophilia strain NCTC10257 chromosome 1	11	4257630-4257734	11	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	Orphan	GCGTGCGGACCAACGGTCCGCACCCACC	28	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	NA|52aa|up_9|NZ_LT906480.1_4246171_4246327_+,NA|412aa|up_2|NZ_LT906480.1_4253210_4254446_-,NA	NA|52aa|up_9|NZ_LT906480.1_4246171_4246327_+	NA	NA|504aa|up_8|NZ_LT906480.1_4246402_4247914_-	PRK13837, PRK13837, two-component system VirA-like sensor kinase	NA|147aa|up_7|NZ_LT906480.1_4247918_4248359_-	cd17557, REC_Rcp-like, phosphoacceptor receiver (REC) domain of cyanobacterial phytochrome response regulator Rcp and similar domains	NA|606aa|up_6|NZ_LT906480.1_4248355_4250173_-	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]	NA|128aa|up_5|NZ_LT906480.1_4250406_4250790_-	COG2823, OsmY, Predicted periplasmic or secreted lipoprotein [General function prediction only]	NA|348aa|up_4|NZ_LT906480.1_4250961_4252005_+	PRK11579, PRK11579, putative oxidoreductase; Provisional	NA|302aa|up_3|NZ_LT906480.1_4252294_4253200_-	PRK09599, PRK09599, NADP-dependent phosphogluconate dehydrogenase	NA|412aa|up_2|NZ_LT906480.1_4253210_4254446_-	NA	NA|197aa|up_1|NZ_LT906480.1_4254463_4255054_-	pfam10001, DUF2242, Uncharacterized protein conserved in bacteria (DUF2242)	NA|726aa|up_0|NZ_LT906480.1_4255299_4257477_-	PRK11186, PRK11186, carboxy terminal-processing peptidase	NA|337aa|down_0|NZ_LT906480.1_4257756_4258767_-	PRK05481, PRK05481, lipoyl synthase; Provisional	NA|237aa|down_1|NZ_LT906480.1_4258784_4259495_-	PRK14342, PRK14342, lipoyl(octanoyl) transferase LipB	NA|93aa|down_2|NZ_LT906480.1_4259482_4259761_-	PRK00907, PRK00907, hypothetical protein; Provisional	NA|353aa|down_3|NZ_LT906480.1_4260112_4261171_+	pfam09982, DUF2219, Uncharacterized protein conserved in bacteria (DUF2219)	NA|406aa|down_4|NZ_LT906480.1_4261472_4262690_-	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]	NA|423aa|down_5|NZ_LT906480.1_4262790_4264059_-	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]	NA|382aa|down_6|NZ_LT906480.1_4264055_4265201_-	TIGR02282, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase B	NA|365aa|down_7|NZ_LT906480.1_4266192_4267287_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|371aa|down_8|NZ_LT906480.1_4267423_4268536_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|692aa|down_9|NZ_LT906480.1_4268532_4270608_-	TIGR03423, pbp2_mrdA, penicillin-binding protein 2
GCF_900186865.1_49243_F02	NZ_LT906480	Stenotrophomonas maltophilia strain NCTC10257 chromosome 1	12	4261161-4261261	12	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	Orphan	GCTCGCTGTAAGCGAGGGGCTGAGGGT	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	NA|412aa|up_5|NZ_LT906480.1_4253210_4254446_-,NA	NA|606aa|up_9|NZ_LT906480.1_4248355_4250173_-	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]	NA|128aa|up_8|NZ_LT906480.1_4250406_4250790_-	COG2823, OsmY, Predicted periplasmic or secreted lipoprotein [General function prediction only]	NA|348aa|up_7|NZ_LT906480.1_4250961_4252005_+	PRK11579, PRK11579, putative oxidoreductase; Provisional	NA|302aa|up_6|NZ_LT906480.1_4252294_4253200_-	PRK09599, PRK09599, NADP-dependent phosphogluconate dehydrogenase	NA|412aa|up_5|NZ_LT906480.1_4253210_4254446_-	NA	NA|197aa|up_4|NZ_LT906480.1_4254463_4255054_-	pfam10001, DUF2242, Uncharacterized protein conserved in bacteria (DUF2242)	NA|726aa|up_3|NZ_LT906480.1_4255299_4257477_-	PRK11186, PRK11186, carboxy terminal-processing peptidase	NA|337aa|up_2|NZ_LT906480.1_4257756_4258767_-	PRK05481, PRK05481, lipoyl synthase; Provisional	NA|237aa|up_1|NZ_LT906480.1_4258784_4259495_-	PRK14342, PRK14342, lipoyl(octanoyl) transferase LipB	NA|93aa|up_0|NZ_LT906480.1_4259482_4259761_-	PRK00907, PRK00907, hypothetical protein; Provisional	NA|406aa|down_0|NZ_LT906480.1_4261472_4262690_-	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]	NA|423aa|down_1|NZ_LT906480.1_4262790_4264059_-	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]	NA|382aa|down_2|NZ_LT906480.1_4264055_4265201_-	TIGR02282, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase B	NA|365aa|down_3|NZ_LT906480.1_4266192_4267287_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|371aa|down_4|NZ_LT906480.1_4267423_4268536_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|692aa|down_5|NZ_LT906480.1_4268532_4270608_-	TIGR03423, pbp2_mrdA, penicillin-binding protein 2	NA|162aa|down_6|NZ_LT906480.1_4270611_4271097_-	COG2891, MreD, Cell shape-determining protein [Cell envelope biogenesis, outer membrane]	NA|394aa|down_7|NZ_LT906480.1_4271093_4272275_-	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional	NA|349aa|down_8|NZ_LT906480.1_4272396_4273443_-	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional	NA|313aa|down_9|NZ_LT906480.1_4273726_4274665_+	cd01942, ribokinase_group_A, Ribokinase-like subgroup A
GCF_900186865.1_49243_F02	NZ_LT906480	Stenotrophomonas maltophilia strain NCTC10257 chromosome 1	13	4278588-4278660	13	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	Orphan	ACCAAGGTCGGCACCCACCAGAGC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	NA|244aa|up_1|NZ_LT906480.1_4275607_4276339_-,NA|87aa|down_2|NZ_LT906480.1_4280158_4280419_+	NA|365aa|up_9|NZ_LT906480.1_4266192_4267287_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|371aa|up_8|NZ_LT906480.1_4267423_4268536_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|692aa|up_7|NZ_LT906480.1_4268532_4270608_-	TIGR03423, pbp2_mrdA, penicillin-binding protein 2	NA|162aa|up_6|NZ_LT906480.1_4270611_4271097_-	COG2891, MreD, Cell shape-determining protein [Cell envelope biogenesis, outer membrane]	NA|394aa|up_5|NZ_LT906480.1_4271093_4272275_-	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional	NA|349aa|up_4|NZ_LT906480.1_4272396_4273443_-	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional	NA|313aa|up_3|NZ_LT906480.1_4273726_4274665_+	cd01942, ribokinase_group_A, Ribokinase-like subgroup A	NA|212aa|up_2|NZ_LT906480.1_4274984_4275620_-	COG0546, Gph, Predicted phosphatases [General function prediction only]	NA|244aa|up_1|NZ_LT906480.1_4275607_4276339_-	NA	NA|643aa|up_0|NZ_LT906480.1_4276466_4278395_-	cd09599, M1_LTA4H, Peptidase M1 family including Leukotriene A4 hydrolase catalytic domain	NA|254aa|down_0|NZ_LT906480.1_4278665_4279427_-	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA|151aa|down_1|NZ_LT906480.1_4279507_4279960_+	cd01285, nucleoside_deaminase, Nucleoside deaminases include adenosine, guanine and cytosine deaminases	NA|87aa|down_2|NZ_LT906480.1_4280158_4280419_+	NA	NA|112aa|down_3|NZ_LT906480.1_4280494_4280830_+	cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent dopamine transporter 1; solute-binding domain	NA|141aa|down_4|NZ_LT906480.1_4280897_4281320_+	pfam04120, Iron_permease, Low affinity iron permease	NA|467aa|down_5|NZ_LT906480.1_4281403_4282804_-	PRK09837, PRK09837, Cu(I)/Ag(I) efflux RND transporter outer membrane protein	NA|395aa|down_6|NZ_LT906480.1_4286032_4287217_-	PRK15030, PRK15030, multidrug efflux RND transporter periplasmic adaptor subunit AcrA	NA|220aa|down_7|NZ_LT906480.1_4287437_4288097_+	PRK10668, PRK10668, DNA-binding transcriptional repressor AcrR; Provisional	NA|331aa|down_8|NZ_LT906480.1_4288142_4289135_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|458aa|down_9|NZ_LT906480.1_4289231_4290605_-	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU
GCF_900186865.1_49243_F02	NZ_LT906480	Stenotrophomonas maltophilia strain NCTC10257 chromosome 1	14	4538776-4538872	14	CRISPRCasFinder	no	PD-DExK	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	Unclear	GGTAGTGCCGGCCGCTGGCCGGCAACCTCGCGAAC	35	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	NA,NA|219aa|down_8|NZ_LT906480.1_4546785_4547442_-,NA|179aa|down_9|NZ_LT906480.1_4547567_4548104_+	NA|265aa|up_9|NZ_LT906480.1_4529701_4530496_-	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC	NA|344aa|up_8|NZ_LT906480.1_4530571_4531603_-	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional	NA|196aa|up_7|NZ_LT906480.1_4531619_4532207_-	PRK05670, PRK05670, anthranilate synthase component II; Provisional	NA|260aa|up_6|NZ_LT906480.1_4532209_4532989_-	pfam04402, SIMPL, Protein of unknown function (DUF541)	NA|492aa|up_5|NZ_LT906480.1_4533056_4534532_-	PRK13565, PRK13565, anthranilate synthase component I; Provisional	NA|310aa|up_4|NZ_LT906480.1_4534832_4535762_-	PRK13054, PRK13054, lipid kinase; Reviewed	NA|161aa|up_3|NZ_LT906480.1_4536087_4536570_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|225aa|up_2|NZ_LT906480.1_4536629_4537304_-	PRK08745, PRK08745, ribulose-phosphate 3-epimerase; Provisional	NA|110aa|up_1|NZ_LT906480.1_4537334_4537664_-	PRK09430, djlA, co-chaperone DjlA	NA|309aa|up_0|NZ_LT906480.1_4537808_4538735_+	PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional	NA|162aa|down_0|NZ_LT906480.1_4538936_4539422_+	COG4539, COG4539, Predicted membrane protein [Function unknown]	NA|943aa|down_1|NZ_LT906480.1_4539755_4542584_+	PRK12648, PRK12648, putative monovalent cation/H+ antiporter subunit A; Reviewed	NA|131aa|down_2|NZ_LT906480.1_4542583_4542976_+	PRK09094, PRK09094, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|512aa|down_3|NZ_LT906480.1_4542972_4544508_+	PRK12666, PRK12666, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|169aa|down_4|NZ_LT906480.1_4544504_4545011_+	PRK08965, PRK08965, putative monovalent cation/H+ antiporter subunit E; Reviewed	NA|95aa|down_5|NZ_LT906480.1_4545007_4545292_+	PRK06161, PRK06161, putative monovalent cation/H+ antiporter subunit F; Reviewed	NA|130aa|down_6|NZ_LT906480.1_4545288_4545678_+	PRK12674, PRK12674, putative monovalent cation/H+ antiporter subunit G; Reviewed	NA|320aa|down_7|NZ_LT906480.1_4545752_4546712_-	COG0530, ECM27, Ca2+/Na+ antiporter [Inorganic ion transport and metabolism]	NA|219aa|down_8|NZ_LT906480.1_4546785_4547442_-	NA	NA|179aa|down_9|NZ_LT906480.1_4547567_4548104_+	NA
GCF_900186865.1_49243_F02	NZ_LT906480	Stenotrophomonas maltophilia strain NCTC10257 chromosome 1	15	4675168-4675350	15	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	Orphan	GAAGATTCCCCGGCACGGTTGGAATGTGCCAACCAAGGTTGGCACCCACC	50	1	1	4675218-4675300	NZ_LT906480.1_4675430-4675512	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	NA|193aa|up_9|NZ_LT906480.1_4665777_4666356_+,NA|87aa|up_2|NZ_LT906480.1_4672714_4672975_+,NA|200aa|up_1|NZ_LT906480.1_4672974_4673574_+,NA|138aa|down_2|NZ_LT906480.1_4679493_4679907_-,NA|171aa|down_8|NZ_LT906480.1_4685975_4686488_-	NA|193aa|up_9|NZ_LT906480.1_4665777_4666356_+	NA	NA|227aa|up_8|NZ_LT906480.1_4666496_4667177_-	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold	NA|111aa|up_7|NZ_LT906480.1_4667188_4667521_-	TIGR02847, Cytochrome_bo3_ubiquinol_oxidase_subunit_4, cytochrome o ubiquinol oxidase subunit IV	NA|212aa|up_6|NZ_LT906480.1_4667522_4668158_-	TIGR02842, Cytochrome_bo3_ubiquinol_oxidase_subunit_3, cytochrome o ubiquinol oxidase, subunit III	NA|659aa|up_5|NZ_LT906480.1_4668154_4670131_-	TIGR02843, Cytochrome_bo3_ubiquinol_oxidase_subunit_1, cytochrome o ubiquinol oxidase, subunit I	NA|302aa|up_4|NZ_LT906480.1_4670136_4671042_-	PRK10525, PRK10525, cytochrome o ubiquinol oxidase subunit II; Provisional	NA|472aa|up_3|NZ_LT906480.1_4671225_4672641_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|87aa|up_2|NZ_LT906480.1_4672714_4672975_+	NA	NA|200aa|up_1|NZ_LT906480.1_4672974_4673574_+	NA	NA|505aa|up_0|NZ_LT906480.1_4673583_4675098_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|434aa|down_0|NZ_LT906480.1_4675571_4676873_-	COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]	NA|801aa|down_1|NZ_LT906480.1_4676872_4679275_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|138aa|down_2|NZ_LT906480.1_4679493_4679907_-	NA	NA|276aa|down_3|NZ_LT906480.1_4680094_4680922_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|360aa|down_4|NZ_LT906480.1_4680935_4682015_+	COG4188, COG4188, Predicted dienelactone hydrolase [General function prediction only]	NA|224aa|down_5|NZ_LT906480.1_4682068_4682740_+	cd06587, VOC, vicinal oxygen chelate (VOC) family	NA|440aa|down_6|NZ_LT906480.1_4682741_4684061_-	pfam04536, TPM_phosphatase, TPM domain	NA|613aa|down_7|NZ_LT906480.1_4684063_4685902_-	COG1164, COG1164, Oligoendopeptidase F [Amino acid transport and metabolism]	NA|171aa|down_8|NZ_LT906480.1_4685975_4686488_-	NA	NA|209aa|down_9|NZ_LT906480.1_4686570_4687197_+	pfam05708, Peptidase_C92, Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
