assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900186835.1_49950_F01	NZ_LT906448	Pasteurella dagmatis strain NCTC11617 chromosome 1	1	289455-291584	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas8f,cas5f,cas7f,cas6f,cas1,cas3f	cas8f,cas5f,cas7f,cas6f,cas1,cas3f,DEDDh,DinG,WYL,cas3	Type I-F	GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	34,35,35	35	TypeI-F	cas8f,cas5f,cas7f,cas6f,cas1,cas3f,DEDDh,DinG,WYL,cas3	NA|279aa|up_8|NZ_LT906448.1_271323_272160_-,NA|49aa|down_9|NZ_LT906448.1_308165_308312_+	NA|312aa|up_9|NZ_LT906448.1_270315_271251_+	PRK11886, PRK11886, bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA	NA|279aa|up_8|NZ_LT906448.1_271323_272160_-	NA	NA|371aa|up_7|NZ_LT906448.1_277986_279099_-	PRK11670, PRK11670, iron-sulfur cluster carrier protein ApbC	NA|683aa|up_6|NZ_LT906448.1_279275_281324_+	PRK00133, metG, methionyl-tRNA synthetase; Reviewed	NA|458aa|up_5|NZ_LT906448.1_281395_282769_-	TIGR00785, Uncharacterized_transporter_HI_0020, anion transporter	NA|719aa|up_4|NZ_LT906448.1_282991_285148_+	PRK11783, rlmL, bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	cas8f|445aa|up_3|NZ_LT906448.1_285415_286750_+	TIGR02564, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy1	cas5f|328aa|up_2|NZ_LT906448.1_286759_287743_+	TIGR02565, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy2	cas7f|335aa|up_1|NZ_LT906448.1_287745_288750_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|187aa|up_0|NZ_LT906448.1_288752_289313_+	TIGR02563, conserved_hypothetical_protein, CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST	cas1|327aa|down_0|NZ_LT906448.1_291680_292661_+	cd09718, Cas1_I-F, CRISPR/Cas system-associated protein Cas1	cas3f|1109aa|down_1|NZ_LT906448.1_292641_295968_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	NA|618aa|down_2|NZ_LT906448.1_296101_297955_+	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional	NA|263aa|down_3|NZ_LT906448.1_298039_298828_-	COG3774, OCH1, Mannosyltransferase OCH1 and related enzymes [Cell envelope biogenesis, outer membrane]	NA|481aa|down_4|NZ_LT906448.1_299575_301018_+	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed	NA|715aa|down_5|NZ_LT906448.1_301469_303614_+	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|300aa|down_6|NZ_LT906448.1_303702_304602_+	PRK11189, PRK11189, lipoprotein NlpI; Provisional	NA|611aa|down_7|NZ_LT906448.1_304703_306536_+	PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional	NA|486aa|down_8|NZ_LT906448.1_306691_308149_+	PRK10859, PRK10859, membrane-bound lytic murein transglycosylase MltF	NA|49aa|down_9|NZ_LT906448.1_308165_308312_+	NA
GCF_900186835.1_49950_F01	NZ_LT906448	Pasteurella dagmatis strain NCTC11617 chromosome 1	2	436923-437008	2	CRISPRCasFinder	no		cas8f,cas5f,cas7f,cas6f,cas1,cas3f,DEDDh,DinG,WYL,cas3	Orphan	AAATATGAAGTAACTTTAGGAAA	23	0	0	NA	NA	NA	1	1	Orphan	cas8f,cas5f,cas7f,cas6f,cas1,cas3f,DEDDh,DinG,WYL,cas3	NA,NA	NA|142aa|up_9|NZ_LT906448.1_425845_426271_-	pfam07450, HycH, Formate hydrogenlyase maturation protein HycH	NA|255aa|up_8|NZ_LT906448.1_426283_427048_-	COG3260, COG3260, Ni,Fe-hydrogenase III small subunit [Energy production and conversion]	NA|190aa|up_7|NZ_LT906448.1_427044_427614_-	PRK08222, PRK08222, hydrogenase 4 subunit H; Validated	NA|575aa|up_6|NZ_LT906448.1_427623_429348_-	COG3261, HycE, Ni,Fe-hydrogenase III large subunit [Energy production and conversion]	NA|509aa|up_5|NZ_LT906448.1_429368_430895_-	PRK06458, PRK06458, hydrogenase 4 subunit F; Validated	NA|215aa|up_4|NZ_LT906448.1_430899_431544_-	PRK11492, hyfE, hydrogenase 4 membrane subunit; Provisional	NA|481aa|up_3|NZ_LT906448.1_431557_433000_-	PRK06525, PRK06525, hydrogenase 4 subunit D; Validated	NA|321aa|up_2|NZ_LT906448.1_433009_433972_-	COG0650, HyfC, Formate hydrogenlyase subunit 4 [Energy production and conversion]	NA|675aa|up_1|NZ_LT906448.1_433978_436003_-	PRK06521, PRK06521, hydrogenase 4 subunit B; Validated	NA|201aa|up_0|NZ_LT906448.1_436044_436647_-	cd10554, HycB_like, HycB, HydN and similar proteins	NA|771aa|down_0|NZ_LT906448.1_437043_439356_+	COG0068, HypF, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]	NA|338aa|down_1|NZ_LT906448.1_439352_440366_-	TIGR02124, Hydrogenase_expression/formation_protein_HypE, hydrogenase expression/formation protein HypE	NA|371aa|down_2|NZ_LT906448.1_440384_441497_-	PRK15062, PRK15062, hydrogenase isoenzymes formation protein HypD; Provisional	NA|263aa|down_3|NZ_LT906448.1_441505_442294_-	PRK10463, PRK10463, hydrogenase nickel incorporation protein HypB; Provisional	NA|75aa|down_4|NZ_LT906448.1_442408_442633_-	pfam01206, TusA, Sulfurtransferase TusA	NA|172aa|down_5|NZ_LT906448.1_442651_443167_-	cd12108, Hr-like, Hemerythrin-like domain	NA|384aa|down_6|NZ_LT906448.1_443159_444311_-	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional	NA|260aa|down_7|NZ_LT906448.1_444647_445427_-	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase	NA|364aa|down_8|NZ_LT906448.1_445426_446518_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|390aa|down_9|NZ_LT906448.1_446749_447919_-	COG1858, MauG, Cytochrome c peroxidase [Inorganic ion transport and metabolism]
GCF_900186835.1_49950_F01	NZ_LT906448	Pasteurella dagmatis strain NCTC11617 chromosome 1	3	2068639-2068752	2	PILER-CR	no		cas8f,cas5f,cas7f,cas6f,cas1,cas3f,DEDDh,DinG,WYL,cas3	Orphan	CTACTCAGTAACTATCAG	18	0	0	NA	NA	NA	2	2	Orphan	cas8f,cas5f,cas7f,cas6f,cas1,cas3f,DEDDh,DinG,WYL,cas3	NA|141aa|up_5|NZ_LT906448.1_2065329_2065752_+,NA|93aa|up_3|NZ_LT906448.1_2066484_2066763_+,NA|92aa|up_2|NZ_LT906448.1_2066954_2067230_+,NA|144aa|up_0|NZ_LT906448.1_2068097_2068529_+,NA|118aa|down_1|NZ_LT906448.1_2069448_2069802_+,NA|109aa|down_2|NZ_LT906448.1_2070415_2070742_+,NA|145aa|down_3|NZ_LT906448.1_2070738_2071173_+,NA|110aa|down_4|NZ_LT906448.1_2073927_2074257_-,NA|350aa|down_6|NZ_LT906448.1_2076308_2077358_+,NA|280aa|down_8|NZ_LT906448.1_2078296_2079136_+	NA|461aa|up_9|NZ_LT906448.1_2060544_2061927_-	PRK04311, PRK04311, selenocysteine synthase; Provisional	NA|428aa|up_8|NZ_LT906448.1_2062552_2063836_+	PRK09692, PRK09692, integrase; Provisional	NA|312aa|up_7|NZ_LT906448.1_2064005_2064941_+	TIGR02894, DNA_bind_RsfA, transcription factor, RsfA family	NA|66aa|up_6|NZ_LT906448.1_2065122_2065320_+	pfam12728, HTH_17, Helix-turn-helix domain	NA|141aa|up_5|NZ_LT906448.1_2065329_2065752_+	NA	NA|240aa|up_4|NZ_LT906448.1_2065772_2066492_+	COG3646, COG3646, Uncharacterized phage-encoded protein [Function unknown]	NA|93aa|up_3|NZ_LT906448.1_2066484_2066763_+	NA	NA|92aa|up_2|NZ_LT906448.1_2066954_2067230_+	NA	NA|143aa|up_1|NZ_LT906448.1_2067573_2068002_+	pfam03592, Terminase_2, Terminase small subunit	NA|144aa|up_0|NZ_LT906448.1_2068097_2068529_+	NA	NA|149aa|down_0|NZ_LT906448.1_2069002_2069449_+	COG3600, GepA, Uncharacterized phage-associated protein [Function unknown]	NA|118aa|down_1|NZ_LT906448.1_2069448_2069802_+	NA	NA|109aa|down_2|NZ_LT906448.1_2070415_2070742_+	NA	NA|145aa|down_3|NZ_LT906448.1_2070738_2071173_+	NA	NA|110aa|down_4|NZ_LT906448.1_2073927_2074257_-	NA	NA|317aa|down_5|NZ_LT906448.1_2074768_2075719_+	COG4823, AbiF, Abortive infection bacteriophage resistance protein [Defense mechanisms]	NA|350aa|down_6|NZ_LT906448.1_2076308_2077358_+	NA	NA|125aa|down_7|NZ_LT906448.1_2077335_2077710_+	COG4933, COG4933, Uncharacterized conserved protein [Function unknown]	NA|280aa|down_8|NZ_LT906448.1_2078296_2079136_+	NA	NA|350aa|down_9|NZ_LT906448.1_2079663_2080713_+	PRK11096, ansB, L-asparaginase II; Provisional
GCF_900186835.1_49950_F01	NZ_LT906448	Pasteurella dagmatis strain NCTC11617 chromosome 1	4	2134750-2135078	3,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3	cas8f,cas5f,cas7f,cas6f,cas1,cas3f,DEDDh,DinG,WYL,cas3	Unclear	GTTCACCGCCGCATAGGCGGCTTAGAAAT,GTTCACCGCCGCATAGGCGGCTTAGAAAT,GTTCACCGCCGCATAGGCGGCTTAGAAA	29,29,28	0	0	NA	NA	I-F:I-F:I-F	4,5,5	5	Unclear	cas8f,cas5f,cas7f,cas6f,cas1,cas3f,DEDDh,DinG,WYL,cas3	NA,NA	NA|223aa|up_9|NZ_LT906448.1_2124018_2124687_-	cd02149, NfsB-like, nitroreductase similar to Escherichia coli NfsB	NA|456aa|up_8|NZ_LT906448.1_2124752_2126120_-	PRK09249, PRK09249, coproporphyrinogen dehydrogenase	NA|147aa|up_7|NZ_LT906448.1_2126137_2126578_-	pfam10675, DUF2489, Protein of unknown function (DUF2489)	NA|190aa|up_6|NZ_LT906448.1_2126583_2127153_-	pfam04220, YihI, Der GTPase activator (YihI)	NA|220aa|up_5|NZ_LT906448.1_2127216_2127876_-	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|968aa|up_4|NZ_LT906448.1_2127957_2130861_-	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|231aa|up_3|NZ_LT906448.1_2131105_2131798_+	COG3201, PnuC, Nicotinamide mononucleotide transporter [Coenzyme metabolism]	NA|174aa|up_2|NZ_LT906448.1_2131818_2132340_+	cd01527, RHOD_YgaP, Member of the Rhodanese Homology Domain superfamily	NA|238aa|up_1|NZ_LT906448.1_2132450_2133164_-	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]	cas3|443aa|up_0|NZ_LT906448.1_2133275_2134604_+	PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional	NA|317aa|down_0|NZ_LT906448.1_2135194_2136145_-	PRK10964, PRK10964, lipopolysaccharide heptosyltransferase RfaC	NA|348aa|down_1|NZ_LT906448.1_2136144_2137188_-	PRK10916, PRK10916, ADP-heptose--LPS heptosyltransferase RfaF	NA|137aa|down_2|NZ_LT906448.1_2137254_2137665_-	COG2847, COG2847, Copper(I)-binding protein [Inorganic ion transport and    metabolism]	NA|475aa|down_3|NZ_LT906448.1_2137784_2139209_-	TIGR01996, Includes:_Phosphotransferase_enzyme_IIB_component, PTS system, sucrose-specific IIBC component	NA|340aa|down_4|NZ_LT906448.1_2139430_2140450_-	TIGR02417, Fructose_repressor_Catabolite_repressor/activator	NA|481aa|down_5|NZ_LT906448.1_2140474_2141917_-	COG1621, SacC, Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism]	NA|308aa|down_6|NZ_LT906448.1_2141954_2142878_-	PRK09434, PRK09434, aminoimidazole riboside kinase; Provisional	NA|204aa|down_7|NZ_LT906448.1_2143067_2143679_+	PRK00218, PRK00218, lysogenization regulator HflD	NA|456aa|down_8|NZ_LT906448.1_2143706_2145074_+	PRK09285, PRK09285, adenylosuccinate lyase; Provisional	NA|529aa|down_9|NZ_LT906448.1_2145449_2147036_+	COG1620, LldP, L-lactate permease [Energy production and conversion]
