assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900185485.1_BL60006	NZ_LT882486	Salmonella enterica subsp. enterica serovar Typhi isolate 4714STDY6831631 chromosome 1	1	3653161-3653581	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	DEDDh,cas3,c2c9_V-U4,DinG,WYL,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	6,6,5	6	TypeI-E	DEDDh,cas3,c2c9_V-U4,DinG,WYL,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|254aa|up_9|NZ_LT882486.1_3645027_3645789_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_LT882486.1_3645769_3646819_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_LT882486.1_3646815_3647295_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_LT882486.1_3647294_3648005_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_LT882486.1_3648023_3648335_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_LT882486.1_3648525_3648849_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_LT882486.1_3648899_3649505_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|NZ_LT882486.1_3649491_3650931_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_LT882486.1_3650940_3651849_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|NZ_LT882486.1_3652099_3653146_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_LT882486.1_3653665_3653959_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|306aa|down_1|NZ_LT882486.1_3653961_3654879_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|235aa|down_2|NZ_LT882486.1_3654878_3655583_-	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas5|242aa|down_3|NZ_LT882486.1_3655582_3656308_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|down_4|NZ_LT882486.1_3656317_3657376_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|201aa|down_5|NZ_LT882486.1_3657398_3658001_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|512aa|down_6|NZ_LT882486.1_3658017_3659553_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	NA|318aa|down_7|NZ_LT882486.1_3662991_3663945_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_8|NZ_LT882486.1_3664032_3664767_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|NZ_LT882486.1_3664842_3666555_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_900185485.1_BL60006	NZ_LT882486	Salmonella enterica subsp. enterica serovar Typhi isolate 4714STDY6831631 chromosome 1	2	4514155-4514258	2	CRISPRCasFinder	no	cas3	DEDDh,cas3,c2c9_V-U4,DinG,WYL,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Unclear	GTAGACCCTGATCCAGTAGACCCGGTTATCCCTGA	35	1	1	4514190-4514223	NZ_LT882486.1_4514244-4514277	NA	1	1	Unclear	DEDDh,cas3,c2c9_V-U4,DinG,WYL,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|115aa|up_4|NZ_LT882486.1_4506452_4506797_-,NA|155aa|down_0|NZ_LT882486.1_4515427_4515892_-,NA|38aa|down_1|NZ_LT882486.1_4516811_4516925_-,NA|31aa|down_3|NZ_LT882486.1_4519225_4519318_-	NA|402aa|up_9|NZ_LT882486.1_4497284_4498490_-	TIGR00210, Sodium/glutamate_symport_carrier_protein, sodium--glutamate symport carrier (gltS)	NA|464aa|up_8|NZ_LT882486.1_4498716_4500108_+	TIGR00801, Uric_acid_permease, uracil-xanthine permease	NA|570aa|up_7|NZ_LT882486.1_4500228_4501938_+	pfam05170, AsmA, AsmA family	NA|773aa|up_6|NZ_LT882486.1_4502040_4504359_-	PRK10658, PRK10658, putative alpha-glucosidase; Provisional	NA|461aa|up_5|NZ_LT882486.1_4504370_4505753_-	PRK11462, PRK11462, putative transporter; Provisional	NA|115aa|up_4|NZ_LT882486.1_4506452_4506797_-	NA	NA|199aa|up_3|NZ_LT882486.1_4507358_4507955_+	TIGR02646, Hypothetical_protein_SMc04429, TIGR02646 family protein	NA|343aa|up_2|NZ_LT882486.1_4509025_4510054_+	COG3943, COG3943, Virulence protein [General function prediction only]	NA|46aa|up_1|NZ_LT882486.1_4510904_4511042_+	pfam01527, HTH_Tnp_1, Transposase	NA|206aa|up_0|NZ_LT882486.1_4511771_4512389_+	COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription]	NA|155aa|down_0|NZ_LT882486.1_4515427_4515892_-	NA	NA|38aa|down_1|NZ_LT882486.1_4516811_4516925_-	NA	NA|227aa|down_2|NZ_LT882486.1_4517543_4518224_+	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|31aa|down_3|NZ_LT882486.1_4519225_4519318_-	NA	NA|909aa|down_4|NZ_LT882486.1_4519339_4522066_-	PRK15122, PRK15122, magnesium-transporting ATPase; Provisional	NA|232aa|down_5|NZ_LT882486.1_4522285_4522981_-	PRK15385, PRK15385, MgtC family protein	NA|301aa|down_6|NZ_LT882486.1_4523486_4524389_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|314aa|down_7|NZ_LT882486.1_4524431_4525373_-	PRK09956, PRK09956, ISNCY family transposase	NA|248aa|down_8|NZ_LT882486.1_4525608_4526352_-	TIGR03581, EF_0839, conserved hypothetical protein EF_0839/AHA_3917	NA|370aa|down_9|NZ_LT882486.1_4526338_4527448_-	TIGR01437, selA_rel, uncharacterized pyridoxal phosphate-dependent enzyme
