The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT855376	Salmonella enterica subsp. enterica serovar Typhimurium isolate STMU2UK chromosome 1	4811399	974704	983436	4811399	protease,transposase	Dickeya_phage(14.29%)	7	NA	NA
WP_001201749.1|974704_975823_+	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.4e-08
WP_000125877.1|975819_977766_+	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
WP_000447499.1|977895_978117_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
WP_000520789.1|978440_978761_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
WP_000934063.1|978791_981068_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	6.2e-165
WP_000502119.1|981259_981718_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	I4AZI8	Saccharomonospora_phage	31.5	1.0e-13
WP_085983316.1|982180_983436_-|transposase	IS3-like element ISSen1 family transposase	transposase	Q6H9S3	Enterobacteria_phage	33.9	5.4e-17
>prophage 2
NZ_LT855376	Salmonella enterica subsp. enterica serovar Typhimurium isolate STMU2UK chromosome 1	4811399	1033847	1132594	4811399	lysis,tail,holin,terminase,portal,tRNA,protease	Salmonella_phage(41.82%)	99	NA	NA
WP_001154025.1|1033847_1034651_+|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	tRNA	NA	NA	NA	NA
WP_001288828.1|1034643_1035966_+	chromosome partition protein MukF	NA	NA	NA	NA	NA
WP_000060025.1|1035946_1036651_+	chromosome partition protein MukE	NA	NA	NA	NA	NA
WP_000572725.1|1036650_1041117_+	chromosome partition protein MukB	NA	NA	NA	NA	NA
WP_000925871.1|1041461_1043303_+	L,D-transpeptidase	NA	NA	NA	NA	NA
WP_000357052.1|1043562_1044111_+	YcbK family protein	NA	A0A0K1LKR7	Rhodobacter_phage	33.7	1.2e-05
WP_001109471.1|1044138_1044786_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_000462653.1|1044847_1046038_-	aspartate transaminase	NA	NA	NA	NA	NA
WP_000977713.1|1046222_1047314_-	porin OmpF	NA	Q1MVN1	Enterobacteria_phage	51.7	2.2e-99
WP_000117870.1|1047920_1049321_-|tRNA	asparagine--tRNA ligase	tRNA	A0A167RLM0	Powai_lake_megavirus	35.1	4.5e-81
WP_000762342.1|1049521_1049983_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_087476708.1|1050299_1051514_+	diaminopropionate ammonia-lyase	NA	NA	NA	NA	NA
WP_000893207.1|1051758_1053195_+	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_000191399.1|1053272_1054475_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_001262306.1|1054669_1055962_-	DUF3596 domain-containing protein	NA	S4TSP2	Salmonella_phage	99.8	1.0e-252
WP_000065276.1|1056006_1056255_-	excisionase family protein	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
WP_001237031.1|1056295_1056535_-	DUF4060 family protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
WP_001539618.1|1056577_1057735_-	recombinase RecT	NA	S4TTE8	Salmonella_phage	100.0	1.6e-217
WP_000017118.1|1057697_1060583_-	PD-(D/E)XK nuclease-like domain-containing protein	NA	S4TNL0	Salmonella_phage	97.2	0.0e+00
WP_001668146.1|1060709_1061009_-	hypothetical protein	NA	S4TSN6	Salmonella_phage	84.5	8.1e-49
WP_000917564.1|1061030_1061189_-	hypothetical protein	NA	H6WRX3	Salmonella_phage	98.1	1.2e-22
WP_014343821.1|1061181_1061442_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038966.1|1061491_1061902_-	helix-turn-helix domain-containing protein	NA	A0A1B5FPF4	Escherichia_phage	42.4	8.1e-07
WP_000370145.1|1062021_1062261_+	helix-turn-helix domain-containing protein	NA	H6WRX5	Salmonella_phage	47.2	8.3e-12
WP_001574095.1|1062226_1062601_+	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
WP_000800010.1|1063610_1064360_+	ATP-binding protein	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
WP_000113629.1|1064370_1064718_+	DUF977 family protein	NA	H6WRX9	Salmonella_phage	89.6	5.4e-52
WP_000065108.1|1064714_1065026_+	ead/Ea22-like family protein	NA	A0A220NQV2	Salmonella_phage	97.2	7.2e-32
WP_014343823.1|1065103_1065394_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001217665.1|1065685_1065919_+	DinI family protein	NA	H6WRY5	Salmonella_phage	98.7	2.1e-36
WP_000807548.1|1066030_1066252_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000929805.1|1066334_1066937_+	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	98.5	8.3e-109
WP_001096552.1|1067145_1067757_+	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	91.6	6.9e-79
WP_001617856.1|1067753_1067900_+	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
WP_001047631.1|1067889_1068687_+	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.6	2.3e-151
WP_001534733.1|1069243_1069369_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000798705.1|1069504_1069954_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076181665.1|1070314_1071001_-|protease	type III secretion system effector protease GtgA	protease	Q9MBM0	Phage_Gifsy-2	99.1	3.9e-131
WP_001574216.1|1071276_1071606_+|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
WP_014343824.1|1071589_1072042_+	lysozyme	NA	A0A0M4R365	Salmonella_phage	96.6	5.1e-79
WP_001541990.1|1072059_1072539_+|lysis	lysis protein	lysis	Q56118	Enterobacteria_phage	77.0	1.4e-55
WP_000371784.1|1072746_1073280_+	DUF1441 family protein	NA	A0A291AWV8	Escherichia_phage	48.1	1.0e-33
WP_000989241.1|1073236_1075375_+|terminase	phage terminase large subunit family protein	terminase	A5LH27	Enterobacteria_phage	72.6	3.4e-290
WP_000196190.1|1075371_1075578_+	hypothetical protein	NA	A0A1W6JT66	Pseudomonas_phage	53.3	2.9e-05
WP_001009207.1|1075574_1077122_+|portal	phage portal protein	portal	A0A291AWU2	Escherichia_phage	64.3	2.8e-177
WP_010989008.1|1077045_1079127_+|protease	Clp protease ClpP	protease	A0A291AWT6	Escherichia_phage	69.5	4.8e-265
WP_001107908.1|1079217_1079541_+	DUF2190 family protein	NA	K7PLV6	Enterobacteria_phage	61.3	7.7e-29
WP_000774239.1|1079533_1079833_+	ATP-binding protein	NA	K7PH43	Enterobacteria_phage	45.1	4.5e-15
WP_000453194.1|1079813_1080380_+|tail	phage tail protein	tail	Q9G063	Phage_Gifsy-2	97.8	9.5e-14
WP_000196702.1|1080376_1080778_+|tail	tail protein	tail	K7PHM6	Enterobacterial_phage	60.9	1.5e-42
WP_000132756.1|1080789_1081539_+|tail	phage tail protein	tail	A0A291AWU6	Escherichia_phage	68.6	3.7e-90
WP_000478859.1|1081584_1081983_+|tail	phage minor tail protein G	tail	K7PLV8	Enterobacteria_phage	56.8	8.6e-30
WP_010989009.1|1081979_1082309_+|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	50.9	5.0e-23
WP_010989010.1|1082388_1085376_+|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	62.1	8.2e-266
WP_000978296.1|1085372_1085705_+|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	61.5	3.3e-35
WP_000725267.1|1085803_1086301_+	Ail/Lom family outer membrane beta-barrel protein	NA	A0A1B0VBR9	Salmonella_phage	36.6	1.4e-16
WP_000877926.1|1086417_1086951_-	superoxide dismutase [Cu-Zn]	NA	Q9MC02	Salmonella_phage	54.0	1.8e-46
WP_001152415.1|1087040_1087736_+|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	66.7	1.3e-89
WP_000606351.1|1087745_1088483_+|tail	phage tail protein	tail	A0A0P0ZE89	Stx2-converting_phage	76.1	1.6e-114
WP_000246065.1|1088380_1089085_+|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	62.6	9.2e-67
WP_001541993.1|1091631_1092507_+	DUF1983 domain-containing protein	NA	K7PKJ2	Enterobacteria_phage	77.1	1.1e-48
WP_000178849.1|1092545_1092788_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001144679.1|1092841_1095280_+|tail	prophage tail fiber N-terminal domain-containing protein	tail	A0A0K2FIZ6	Escherichia_phage	63.4	2.9e-91
WP_000143167.1|1095279_1095861_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	89.5	1.7e-95
WP_001533476.1|1096336_1097305_+	SPI-2 type III secretion system effector SseI	NA	Q9MBL9	Phage_Gifsy-2	99.7	7.9e-194
WP_000334547.1|1097952_1098579_-	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	63.2	1.4e-66
WP_010989011.1|1098647_1098947_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001525490.1|1098931_1099618_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000497441.1|1099888_1100080_-	DinI-like family protein	NA	S4TNM0	Salmonella_phage	95.2	6.2e-26
WP_000193784.1|1100506_1103119_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.6	6.3e-20
WP_000291723.1|1103326_1104337_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_001220671.1|1104502_1105045_+	cell division protein ZapC	NA	NA	NA	NA	NA
WP_000224069.1|1105041_1106151_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_001086486.1|1106249_1108358_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA	NA
WP_000053044.1|1108370_1110278_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
WP_000333152.1|1110292_1111546_+	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
WP_000433414.1|1111550_1113191_+	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
WP_000759136.1|1113187_1113751_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_001537784.1|1114006_1114174_+	ribosome modulation factor	NA	NA	NA	NA	NA
WP_000227928.1|1114273_1114792_-	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
WP_000156453.1|1114860_1116621_-|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_000877172.1|1116806_1117259_+	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
WP_001674965.1|1117330_1118383_-	porin OmpA	NA	NA	NA	NA	NA
WP_000288732.1|1118739_1119249_-	cell division inhibitor SulA	NA	NA	NA	NA	NA
WP_001202375.1|1119465_1120071_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA	NA
WP_000950880.1|1120057_1122211_-	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_001261222.1|1122229_1122676_-	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_000420505.1|1122799_1124854_+	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.6	8.5e-20
WP_000424187.1|1124889_1125348_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_000847719.1|1125442_1126105_-	DUF2057 family protein	NA	NA	NA	NA	NA
WP_001537782.1|1126278_1126692_+	CoA-binding protein	NA	NA	NA	NA	NA
WP_000561983.1|1126736_1127054_-	heat shock protein HspQ	NA	NA	NA	NA	NA
WP_000140480.1|1127111_1128323_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA	NA
WP_000859419.1|1128537_1129086_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_000548082.1|1129111_1129891_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000072884.1|1129939_1130221_+	acylphosphatase	NA	NA	NA	NA	NA
WP_000904446.1|1130217_1130547_-	sulfurtransferase TusE	NA	NA	NA	NA	NA
WP_000374050.1|1130633_1131293_-|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	51.9	2.3e-43
WP_000938191.1|1131913_1132594_-|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	70.6	8.3e-81
>prophage 3
NZ_LT855376	Salmonella enterica subsp. enterica serovar Typhimurium isolate STMU2UK chromosome 1	4811399	1991650	2071004	4811399	plate,lysis,tail,holin,terminase,portal,protease,integrase,transposase,capsid,head	Salmonella_phage(86.36%)	102	1998188:1998203	2072627:2072642
WP_000502119.1|1991650_1992109_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	I4AZI8	Saccharomonospora_phage	31.5	1.0e-13
WP_000659251.1|1992289_1993495_-	lysine-N-methylase	NA	NA	NA	NA	NA
WP_000079805.1|1993573_1995061_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_000146802.1|1995317_1996721_+	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_000287764.1|1996735_1997143_+	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_000204899.1|1997142_1997511_+	flagella biosynthesis regulatory protein FliT	NA	NA	NA	NA	NA
WP_000795487.1|1997582_1999067_+	alpha-amylase	NA	NA	NA	NA	NA
1998188:1998203	attL	TGAAAATATCGATTTT	NA	NA	NA	NA
WP_000754695.1|1999106_1999532_-	lipoprotein	NA	NA	NA	NA	NA
WP_001535233.1|1999717_2000923_+	selenium metabolism membrane protein YedE/FdhT	NA	NA	NA	NA	NA
WP_000790504.1|2000919_2001153_+	sulfurtransferase-like selenium metabolism protein YedF	NA	NA	NA	NA	NA
WP_000639596.1|2001417_2001804_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000719036.1|2001923_2002238_-	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_001276834.1|2002454_2004137_+	flagellar M-ring protein FliF	NA	NA	NA	NA	NA
WP_087476726.1|2004129_2005125_+	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_000064163.1|2005117_2005825_+	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_000213257.1|2005824_2007195_+	flagellum-specific ATP synthase FliI	NA	NA	NA	NA	NA
WP_000046981.1|2007216_2007660_+	flagella biosynthesis chaperone FliJ	NA	NA	NA	NA	NA
WP_000631669.1|2007656_2008874_+	flagellar hook length control protein FliK	NA	NA	NA	NA	NA
WP_000132169.1|2008978_2009446_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_000502811.1|2009450_2010455_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_001282115.1|2010451_2010865_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_000978276.1|2010864_2011242_+	flagellar type III secretion system protein FliO	NA	NA	NA	NA	NA
WP_001253410.1|2011241_2011979_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_000187355.1|2011988_2012258_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_000616953.1|2012266_2013061_+	flagellar type III secretion system protein FliR	NA	NA	NA	NA	NA
WP_000103974.1|2013342_2013966_+	transcriptional regulator RcsA	NA	NA	NA	NA	NA
WP_000867218.1|2014004_2014199_-	protein DsrB	NA	NA	NA	NA	NA
WP_000844798.1|2014327_2014555_+	YodD family peroxide/acid resistance protein	NA	NA	NA	NA	NA
WP_000948794.1|2014864_2015680_+	mannosyl-3-phosphoglycerate phosphatase-related protein	NA	NA	NA	NA	NA
WP_001119819.1|2015658_2017371_-	cellulose biosynthesis regulator YedQ	NA	A0A127AWB9	Bacillus_phage	37.4	1.2e-19
WP_000232161.1|2017535_2017721_-	YodC family protein	NA	NA	NA	NA	NA
WP_085983315.1|2017797_2018715_-	DUF808 domain-containing protein	NA	NA	NA	NA	NA
WP_001212264.1|2018884_2019805_+	drug/metabolite exporter YedA	NA	NA	NA	NA	NA
WP_000785978.1|2019793_2020264_-	very short patch repair endonuclease	NA	E5E3X5	Burkholderia_phage	46.9	1.2e-30
WP_001157322.1|2020244_2021675_-	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
WP_000377041.1|2021748_2022444_-	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.1	2.8e-07
WP_000107430.1|2022535_2022835_-	membrane protein	NA	NA	NA	NA	NA
WP_001080679.1|2023485_2024691_+	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	54.9	2.8e-108
WP_024131109.1|2024951_2025140_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000208509.1|2025150_2025363_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
WP_000457662.1|2025817_2027086_-	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	92.2	4.2e-227
WP_000394196.1|2027088_2027508_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
WP_000500831.1|2027634_2027796_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001526483.1|2028426_2028648_-	helix-turn-helix domain-containing protein	NA	Q8HAB1	Salmonella_phage	100.0	1.2e-36
WP_000492926.1|2028860_2029868_+	type III secretion system effector arginine glycosyltransferase	NA	Q8HAB2	Salmonella_phage	100.0	7.9e-197
WP_015701331.1|2030152_2030752_-|tail	tail fiber assembly protein	tail	Q8HAB3	Salmonella_phage	100.0	5.9e-107
WP_000554737.1|2030721_2032284_-	hypothetical protein	NA	Q8HAB4	Salmonella_phage	100.0	2.6e-287
WP_087476727.1|2032270_2032858_-	DUF2313 domain-containing protein	NA	A0A192Y5V3	Salmonella_phage	99.5	8.3e-114
WP_014343855.1|2032860_2033382_-|plate	baseplate J/gp47 family protein	plate	Q8HAB6	Salmonella_phage	100.0	2.9e-94
WP_014343856.1|2033416_2033962_-|plate	baseplate J/gp47 family protein	plate	Q8HAB7	Salmonella_phage	100.0	9.2e-99
WP_000605050.1|2033933_2034347_-	phage GP46 family protein	NA	Q8HAB8	Salmonella_phage	100.0	1.1e-75
WP_001273649.1|2034351_2034885_-|plate	phage baseplate assembly protein	plate	Q8HAB9	Salmonella_phage	100.0	1.4e-96
WP_001066636.1|2034884_2035943_-	hypothetical protein	NA	Q8HAC0	Salmonella_phage	100.0	1.3e-202
WP_000863818.1|2035939_2037280_-	DNA circularization N-terminal domain-containing protein	NA	A0A192Y5U9	Salmonella_phage	99.6	5.7e-251
WP_087476728.1|2037313_2039242_-|tail	phage tail tape measure protein	tail	Q8HAC2	Salmonella_phage	99.7	0.0e+00
WP_000588852.1|2039326_2039653_-|tail	phage tail assembly protein	tail	Q8HAC3	Salmonella_phage	99.1	2.3e-52
WP_000515952.1|2039649_2040006_-|tail	phage tail tube protein	tail	A0A192Y8K0	Salmonella_phage	100.0	2.6e-62
WP_001007991.1|2040005_2041502_-|tail	phage tail sheath subtilisin-like domain-containing protein	tail	Q8HAC5	Salmonella_phage	100.0	2.7e-278
WP_000497739.1|2041491_2041656_-	DUF2635 domain-containing protein	NA	Q8HAC6	Salmonella_phage	100.0	1.0e-24
WP_000779218.1|2041659_2042220_-	hypothetical protein	NA	Q8HAC7	Salmonella_phage	100.0	3.0e-105
WP_001135697.1|2042216_2042729_-	hypothetical protein	NA	Q8HAC8	Salmonella_phage	100.0	4.6e-92
WP_000702408.1|2042700_2043105_-|head	phage head closure protein	head	Q8HAC9	Salmonella_phage	100.0	1.4e-72
WP_000927378.1|2043101_2043425_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A192Y8J4	Salmonella_phage	100.0	6.3e-55
WP_000601353.1|2043427_2043628_-	hypothetical protein	NA	Q8HAD1	Salmonella_phage	100.0	1.4e-28
WP_000257528.1|2043678_2044884_-|capsid	phage major capsid protein	capsid	Q8HAD2	Salmonella_phage	100.0	1.6e-223
WP_001193639.1|2044898_2045549_-|head,protease	HK97 family phage prohead protease	head,protease	Q8HAD3	Salmonella_phage	100.0	1.5e-119
WP_000466254.1|2045526_2046768_-|portal	phage portal protein	portal	Q8HAD4	Salmonella_phage	99.8	2.0e-242
WP_000605609.1|2046767_2046950_-	hypothetical protein	NA	Q8HAD5	Salmonella_phage	100.0	1.0e-25
WP_000088182.1|2046961_2048695_-|terminase	terminase large subunit	terminase	Q8HAD6	Salmonella_phage	100.0	0.0e+00
WP_000929191.1|2048691_2049186_-|terminase	phage terminase small subunit P27 family	terminase	Q8HAD7	Salmonella_phage	100.0	4.6e-89
WP_001135225.1|2049311_2049662_-	HNH endonuclease	NA	Q8HA82	Salmonella_phage	100.0	2.5e-65
WP_001292890.1|2049722_2050025_-	hypothetical protein	NA	Q8HA83	Salmonella_phage	100.0	3.6e-52
WP_000877027.1|2050244_2050664_-	KilA-N domain-containing protein	NA	Q8HA84	Salmonella_phage	100.0	4.8e-71
WP_001050825.1|2050876_2051362_-|lysis	lysis protein	lysis	Q8HA85	Salmonella_phage	100.0	5.9e-81
WP_001005901.1|2051358_2051973_-	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	100.0	9.3e-116
WP_001527046.1|2051975_2052320_-|holin	phage holin, lambda family	holin	Q8HA87	Salmonella_phage	100.0	5.3e-44
WP_014343859.1|2052481_2052916_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001527054.1|2052845_2053103_-	hypothetical protein	NA	Q8HA88	Salmonella_phage	100.0	5.2e-44
WP_000188927.1|2053235_2053859_-	hypothetical protein	NA	Q8HA89	Salmonella_phage	100.0	9.1e-119
WP_001202277.1|2053869_2054859_-	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	97.6	4.9e-191
WP_001061457.1|2054866_2055727_-	KilA-N domain-containing protein	NA	Q8HA92	Salmonella_phage	100.0	2.9e-163
WP_001241579.1|2055743_2056133_-	RusA family crossover junction endodeoxyribonuclease	NA	Q8HA93	Salmonella_phage	100.0	3.7e-70
WP_000066908.1|2056129_2057023_-	phage N-6-adenine-methyltransferase	NA	Q8HA94	Salmonella_phage	100.0	7.6e-175
WP_001684745.1|2057022_2057505_-	PerC family transcriptional regulator	NA	Q8HA95	Salmonella_phage	100.0	1.1e-87
WP_000061500.1|2057506_2058325_-	helix-turn-helix domain-containing protein	NA	Q8HA96	Salmonella_phage	100.0	2.8e-136
WP_000620702.1|2058321_2058546_-	hypothetical protein	NA	A0A1C9II64	Salmonella_phage	100.0	3.3e-39
WP_087476729.1|2058542_2059700_-	Rha family phage regulatory protein	NA	Q8HA97	Salmonella_phage	99.7	1.6e-217
WP_000509731.1|2059696_2060251_-	hypothetical protein	NA	A0A1C9II13	Salmonella_phage	100.0	6.9e-102
WP_001191666.1|2060279_2060504_-	helix-turn-helix transcriptional regulator	NA	A0A1C9IHV8	Salmonella_phage	100.0	1.9e-34
WP_001020636.1|2060601_2061297_+	helix-turn-helix transcriptional regulator	NA	Q8HAA0	Salmonella_phage	100.0	3.2e-128
WP_000997190.1|2062111_2062483_+	hypothetical protein	NA	Q8HAA1	Salmonella_phage	100.0	1.1e-63
WP_000080415.1|2062540_2063368_+	DUF2303 family protein	NA	Q8HAA2	Salmonella_phage	100.0	7.5e-153
WP_000008351.1|2063504_2064044_+	hypothetical protein	NA	A0A192Y8M4	Salmonella_phage	100.0	2.6e-98
WP_000764235.1|2064114_2064345_+	hypothetical protein	NA	Q8HAA4	Salmonella_phage	100.0	2.0e-34
WP_000071070.1|2064341_2064857_+	DUF262 domain-containing protein	NA	Q8HAA5	Salmonella_phage	100.0	7.4e-98
WP_000065095.1|2064853_2065471_+	ead/Ea22-like family protein	NA	Q8HAA6	Salmonella_phage	100.0	2.6e-113
WP_000208068.1|2065467_2066301_+	hypothetical protein	NA	Q8HAA7	Salmonella_phage	100.0	4.7e-163
WP_001061334.1|2066304_2066874_+	3'-5' exoribonuclease	NA	A0A192Y6E0	Salmonella_phage	100.0	7.1e-110
WP_001527041.1|2066913_2067141_+	DUF4224 domain-containing protein	NA	Q8HAA9	Salmonella_phage	100.0	3.2e-37
WP_000532847.1|2067142_2068132_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A192Y7M7	Salmonella_phage	100.0	8.6e-196
WP_000598920.1|2068423_2069221_+	DgsA anti-repressor MtfA	NA	NA	NA	NA	NA
WP_001219015.1|2070530_2071004_+	peptidase	NA	A0A0F6TJ61	Escherichia_coli_O157_typing_phage	77.6	7.1e-39
2072627:2072642	attR	TGAAAATATCGATTTT	NA	NA	NA	NA
>prophage 4
NZ_LT855376	Salmonella enterica subsp. enterica serovar Typhimurium isolate STMU2UK chromosome 1	4811399	2156998	2167504	4811399		Enterobacteria_phage(37.5%)	10	NA	NA
WP_000126349.1|2156998_2158312_-	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
WP_000565905.1|2158338_2159418_-	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	6.6e-16
WP_000648784.1|2159422_2160196_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000018226.1|2160192_2161185_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_000973708.1|2161190_2161742_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.0	2.2e-52
WP_000857529.1|2161742_2162621_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	65.5	9.3e-109
WP_001023662.1|2162668_2163568_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	1.4e-30
WP_000697840.1|2163567_2164653_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.2e-102
WP_000981469.1|2165029_2165923_-	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_001111841.1|2166100_2167504_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	27.1	3.1e-21
>prophage 5
NZ_LT855376	Salmonella enterica subsp. enterica serovar Typhimurium isolate STMU2UK chromosome 1	4811399	2235812	2244983	4811399	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000195332.1|2235812_2237846_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
WP_000703138.1|2238086_2238545_+	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	71.9	3.2e-52
WP_001197952.1|2238716_2239247_+	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000950413.1|2239303_2239771_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_000598637.1|2239817_2240537_-	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000272845.1|2240533_2242219_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.1	6.2e-279
WP_001240418.1|2242441_2243173_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_001261696.1|2243232_2243340_+	protein YohO	NA	NA	NA	NA	NA
WP_000824855.1|2243320_2244052_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000569166.1|2244035_2244983_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
>prophage 6
NZ_LT855376	Salmonella enterica subsp. enterica serovar Typhimurium isolate STMU2UK chromosome 1	4811399	2264390	2330793	4811399	holin,lysis,tail	Salmonella_phage(28.57%)	60	NA	NA
WP_000989296.1|2264390_2265086_+|lysis	CidB/LrgB family autolysis modulator	lysis	NA	NA	NA	NA
WP_000553526.1|2265239_2266124_+	cytidine deaminase	NA	NA	NA	NA	NA
WP_000920081.1|2266300_2267020_+	outer membrane permeability protein SanA	NA	NA	NA	NA	NA
WP_087476732.1|2267016_2267262_+	DUF2542 family protein	NA	NA	NA	NA	NA
WP_001136409.1|2267466_2268708_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000956095.1|2268701_2269937_+	NAD-dependent dihydropyrimidine dehydrogenase subunit PreA	NA	NA	NA	NA	NA
WP_001275101.1|2270011_2271022_-	galactose/methyl galactoside ABC transporter permease MglC	NA	NA	NA	NA	NA
WP_000535907.1|2271037_2272558_-	galactose/methyl galactoside ABC transporter ATP-binding protein MglA	NA	F2Y2R6	Organic_Lake_phycodnavirus	31.9	1.0e-09
WP_001036943.1|2272691_2273690_-	galactose/glucose ABC transporter substrate-binding protein MglB	NA	NA	NA	NA	NA
WP_000628631.1|2274188_2275211_-	HTH-type transcriptional regulator GalS	NA	NA	NA	NA	NA
WP_001526153.1|2275360_2276503_-	DUF418 family protein	NA	NA	NA	NA	NA
WP_001139611.1|2276517_2277186_-	GTP cyclohydrolase I FolE	NA	M1Q6X8	Cellulophaga_phage	56.3	4.1e-56
WP_000425488.1|2277515_2278373_+	S-formylglutathione hydrolase	NA	NA	NA	NA	NA
WP_000876817.1|2278361_2278751_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000443208.1|2278755_2280123_-	L-serine ammonia-lyase	NA	NA	NA	NA	NA
WP_000022915.1|2280339_2281227_+	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
WP_000023807.1|2281259_2282582_+	MFS transporter	NA	NA	NA	NA	NA
WP_000488255.1|2282625_2284617_-	catecholate siderophore receptor CirA	NA	A0A0P0I887	Acinetobacter_phage	37.9	6.7e-14
WP_000535000.1|2284961_2286431_-	lysine-specific permease	NA	NA	NA	NA	NA
WP_000548308.1|2286620_2287484_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000137961.1|2287604_2288654_+	YeiH family protein	NA	NA	NA	NA	NA
WP_000873909.1|2288732_2289590_+	deoxyribonuclease IV	NA	A0A1V0SBL9	Catovirus	28.5	2.2e-22
WP_000854414.1|2289654_2291343_-	PTS fructose transporter subunit IIBC	NA	NA	NA	NA	NA
WP_000091249.1|2291359_2292298_-	1-phosphofructokinase	NA	NA	NA	NA	NA
WP_000487287.1|2292297_2293428_-	fused PTS fructose transporter subunit IIA/HPr protein	NA	NA	NA	NA	NA
WP_000551937.1|2293796_2294978_+	sugar efflux transporter SetB	NA	NA	NA	NA	NA
WP_001213882.1|2295042_2295708_-	membrane protein	NA	NA	NA	NA	NA
WP_001519564.1|2295709_2295832_-	membrane protein	NA	NA	NA	NA	NA
WP_010989043.1|2296219_2296474_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA	NA
WP_001136822.1|2296797_2297370_+	elongation factor P-like protein YeiP	NA	NA	NA	NA	NA
WP_000169350.1|2297582_2298569_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_000178095.1|2298598_2299318_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_000241015.1|2299731_2300304_+	bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase	NA	A0A1V0DZX6	Clostridioides_phage	38.9	8.1e-13
WP_000957746.1|2300629_2302186_+	cyclic di-GMP phosphodiesterase	NA	NA	NA	NA	NA
WP_087476733.1|2302292_2304098_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000501623.1|2304107_2305202_+	microcin C ABC transporter permease YejB	NA	NA	NA	NA	NA
WP_001137765.1|2305201_2306227_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000203622.1|2306228_2307818_+	microcin C ABC transporter ATP-binding protein YejF	NA	G9BWD6	Planktothrix_phage	32.5	8.5e-20
WP_001094639.1|2307821_2308166_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000213347.1|2308556_2309747_-	Bcr/CflA family multidrug efflux MFS transporter	NA	S4TR35	Salmonella_phage	22.2	2.4e-19
WP_001234836.1|2309774_2310470_-	16S rRNA pseudouridine(516) synthase RsuA	NA	NA	NA	NA	NA
WP_000578121.1|2310621_2312382_+	DEAD/DEAH box helicase	NA	M4Q3N1	Vibrio_phage	41.6	1.9e-100
WP_000494192.1|2312506_2312791_+	50S ribosomal protein L25	NA	NA	NA	NA	NA
WP_000033440.1|2312899_2313520_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000050806.1|2313547_2314555_-	nucleoid-associated protein YejK	NA	A0A1V0E8C0	Vibrio_phage	48.3	4.5e-83
WP_001135904.1|2314734_2314962_+	YejL family protein	NA	NA	NA	NA	NA
WP_000256150.1|2314993_2316754_+	cardiolipin transport protein PbgA	NA	NA	NA	NA	NA
WP_000806401.1|2317034_2317538_-	LexA family transcriptional regulator	NA	Q1MVE7	Enterobacteria_phage	71.3	9.5e-50
WP_000884778.1|2317565_2317856_+	DinI family protein	NA	S4TND2	Salmonella_phage	83.3	4.7e-25
WP_000639473.1|2318212_2320042_+	acyltransferase	NA	C6ZR20	Salmonella_phage	29.6	3.0e-61
WP_000022213.1|2320095_2320539_-|tail	tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	43.9	1.4e-28
WP_001215679.1|2320916_2321444_-|tail	tail fiber assembly protein	tail	A0A1S6KZZ1	Salmonella_phage	31.3	3.1e-11
WP_000554739.1|2321446_2322688_-	hypothetical protein	NA	Q8HAB4	Salmonella_phage	95.3	1.0e-52
WP_001120499.1|2323280_2323610_-|holin	phage holin, lambda family	holin	Q8SBE1	Shigella_phage	94.6	3.9e-36
WP_000894640.1|2323906_2325238_+	AAA family ATPase	NA	R9TRQ8	Vibrio_phage	28.5	2.1e-19
WP_010989045.1|2325266_2325635_-	antitermination protein Q	NA	A5LH77	Enterobacteria_phage	81.7	7.4e-52
WP_001202279.1|2325649_2326639_-	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	97.3	6.0e-189
WP_014343868.1|2326967_2329334_-	SPI-2 type III secretion system effector E3 ubiquitin transferase SspH2	NA	Q9MBL9	Phage_Gifsy-2	88.0	3.2e-71
WP_001113462.1|2329502_2329706_-|tail	tail protein	tail	NA	NA	NA	NA
WP_000624225.1|2330001_2330793_-|tail	tail fiber protein	tail	Q1MVL8	Enterobacteria_phage	31.6	1.7e-48
>prophage 7
NZ_LT855376	Salmonella enterica subsp. enterica serovar Typhimurium isolate STMU2UK chromosome 1	4811399	2670380	2777510	4811399	lysis,tail,holin,terminase,portal,tRNA,protease,integrase,transposase,capsid,head	Salmonella_phage(33.33%)	112	2694925:2694941	2785414:2785430
WP_000940032.1|2670380_2671112_-|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	tRNA	NA	NA	NA	NA
WP_000553467.1|2671230_2672034_+	inositol-1-monophosphatase	NA	NA	NA	NA	NA
WP_000174944.1|2672178_2673057_+	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	24.7	3.5e-15
WP_000985204.1|2673238_2674282_+	anaerobic sulfite reductase subunit A	NA	NA	NA	NA	NA
WP_000017587.1|2674285_2675104_+	anaerobic sulfite reductase subunit B	NA	NA	NA	NA	NA
WP_000020685.1|2675114_2676128_+	sulfite reductase subunit C	NA	NA	NA	NA	NA
WP_000111027.1|2676128_2677115_-	nickel/cobalt transporter	NA	NA	NA	NA	NA
WP_000805728.1|2677105_2677744_-	DUF1007 family protein	NA	NA	NA	NA	NA
WP_000982961.1|2677869_2679147_+	stationary phase inducible protein CsiE	NA	NA	NA	NA	NA
WP_001173729.1|2679141_2680281_-	3-phenylpropionate MFS transporter	NA	NA	NA	NA	NA
WP_000919178.1|2680476_2681730_-	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	53.0	1.3e-100
WP_000883142.1|2682054_2683245_+	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_001187149.1|2683426_2684971_+	lysine decarboxylation/transport transcriptional activator CadC	NA	NA	NA	NA	NA
WP_000100008.1|2685331_2686663_+	cadaverine/lysine antiporter	NA	NA	NA	NA	NA
WP_001100652.1|2686745_2688890_+	lysine decarboxylase CadA	NA	NA	NA	NA	NA
WP_000856793.1|2688945_2690406_+	dipeptide permease DtpD	NA	A0A0P0IY73	Acinetobacter_phage	28.8	1.7e-46
WP_000717694.1|2690454_2690793_-	nitrogen regulatory protein P-II	NA	NA	NA	NA	NA
WP_000625591.1|2690869_2692207_-	two-component system response regulator GlrR	NA	W8CYM9	Bacillus_phage	29.2	1.8e-10
WP_001054236.1|2692203_2692968_-	two-component system QseEF-associated lipoprotein QseG	NA	NA	NA	NA	NA
WP_001670672.1|2692969_2694400_-	two component system sensor histidine kinase QseE/GlrK	NA	W8CYF6	Bacillus_phage	26.1	2.0e-15
2694925:2694941	attL	CGCCTTATCCGGCCTAC	NA	NA	NA	NA
WP_000970045.1|2695049_2698937_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	57.6	1.4e-127
WP_001747289.1|2698958_2699192_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000734248.1|2699192_2700737_+	membrane-bound lytic murein transglycosylase MltF	NA	NA	NA	NA	NA
WP_001134566.1|2700787_2701339_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	NA	NA	NA	NA
WP_000253558.1|2701363_2701999_-	phosphatidylglycerophosphatase C	NA	NA	NA	NA	NA
WP_000361664.1|2702002_2703364_-	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_001048530.1|2703374_2704268_-	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA	NA
WP_000995703.1|2704383_2705232_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000684022.1|2705270_2706188_-	oxidoreductase	NA	NA	NA	NA	NA
WP_001276370.1|2706209_2707406_-	OFA family MFS transporter	NA	NA	NA	NA	NA
WP_001022463.1|2707521_2708448_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	24.4	3.0e-09
WP_001196290.1|2708485_2708746_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	52.3	1.4e-17
WP_000986043.1|2708857_2709238_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_000818972.1|2709237_2709969_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_000399380.1|2709980_2710709_-	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_000102232.1|2710720_2711626_-	GTPase Era	NA	NA	NA	NA	NA
WP_001068341.1|2711622_2712303_-	ribonuclease III	NA	A0A2K9L5P0	Tupanvirus	31.8	7.4e-21
WP_000002559.1|2712576_2713551_-	signal peptidase I	NA	NA	NA	NA	NA
WP_000790154.1|2713567_2715367_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	24.9	7.2e-23
WP_010989047.1|2715771_2717265_+	type III secretion effector GogB	NA	Q9MBM1	Phage_Gifsy-1	100.0	3.4e-260
WP_001542312.1|2717731_2717869_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015589559.1|2718581_2718746_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_001738443.1|2719453_2719666_-	helix-turn-helix domain-containing protein	NA	S4TTF2	Salmonella_phage	90.6	3.8e-08
WP_010989049.1|2719772_2720000_+	PagK-like protein	NA	NA	NA	NA	NA
WP_000143154.1|2720096_2720675_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	88.9	3.6e-93
WP_000593433.1|2720664_2721489_-	macro domain-containing protein	NA	A0A0M4QWS3	Salmonella_phage	92.0	1.2e-145
WP_087476736.1|2721485_2723858_-|tail	prophage tail fiber N-terminal domain-containing protein	tail	A0A0K2FIZ6	Escherichia_phage	65.7	9.6e-92
WP_000178849.1|2723911_2724154_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000514920.1|2724192_2727555_-	host specificity protein J	NA	K7PKJ2	Enterobacteria_phage	79.6	0.0e+00
WP_000246126.1|2727616_2728264_-|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	77.7	2.1e-89
WP_000662739.1|2728161_2728899_-|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	85.0	5.2e-129
WP_001152689.1|2728905_2729604_-|tail	phage minor tail protein L	tail	A0A1B5FP81	Escherichia_phage	76.3	5.5e-104
WP_000447369.1|2729613_2729943_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	70.4	1.3e-42
WP_000372065.1|2729945_2733041_-|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	62.3	1.7e-274
WP_010989052.1|2733012_2733351_-|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	62.4	1.3e-31
WP_000479607.1|2733347_2733743_-|tail	phage minor tail protein G	tail	A5LH36	Enterobacteria_phage	56.5	2.3e-30
WP_000971954.1|2733793_2734540_-	Ig-like domain-containing protein	NA	A0A291AWU6	Escherichia_phage	76.9	1.9e-99
WP_000033885.1|2734547_2734949_-|tail	tail protein	tail	Q9G0F3	Phage_Gifsy-1	100.0	8.1e-52
WP_000817263.1|2735057_2736188_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	Q9G0F2	Phage_Gifsy-1	100.0	9.2e-218
WP_000677089.1|2736236_2736815_-|tail	phage tail protein	tail	A5LH33	Enterobacteria_phage	80.2	3.7e-82
WP_000083294.1|2736842_2737226_-|head,tail	head-tail joining protein	head,tail	A0A0K2FJB7	Enterobacteria_phage	55.6	9.2e-29
WP_000201486.1|2737236_2737596_-	DNA-packaging protein FI	NA	NA	NA	NA	NA
WP_000522566.1|2737653_2738682_-|capsid	major capsid protein	capsid	C6ZCY2	Enterobacteria_phage	61.1	1.7e-114
WP_000011260.1|2738736_2739084_-|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	52.7	9.2e-20
WP_001189503.1|2739096_2740593_-	S49 family peptidase	NA	A0A0K2FI53	Enterobacteria_phage	52.2	8.1e-97
WP_000831821.1|2740582_2742163_-|portal	phage portal protein	portal	K7P6U7	Enterobacteria_phage	62.8	9.6e-189
WP_000201415.1|2742159_2742363_-	gpW family protein	NA	K7PM10	Enterobacteria_phage	73.8	1.9e-17
WP_000623091.1|2742346_2744278_-|terminase	phage terminase large subunit family protein	terminase	A0A0K2FJ14	Enterobacteria_phage	65.7	6.3e-259
WP_001102153.1|2744249_2744795_-|terminase	terminase small subunit	terminase	A0A0U2S671	Escherichia_phage	80.6	1.5e-56
WP_000669690.1|2745081_2745483_+	pre-peptidase C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_001533543.1|2745718_2746171_-|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	92.7	2.9e-66
WP_000984581.1|2746188_2746641_-	lysozyme	NA	A0A0M4R365	Salmonella_phage	97.3	5.1e-79
WP_001574216.1|2746624_2746954_-|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
WP_001110783.1|2747229_2747916_+|protease	type III secretion system effector protease GogA	protease	Q9MBM2	Phage_Gifsy-1	100.0	9.4e-133
WP_000657897.1|2748130_2748319_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000211410.1|2748825_2749389_-	ORF6N domain-containing protein	NA	A0A0P0ZC44	Stx2-converting_phage	92.2	7.6e-56
WP_001097241.1|2749661_2750339_-	antitermination protein	NA	I6PDF8	Cronobacter_phage	54.0	7.7e-63
WP_000801757.1|2750335_2750476_-	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	78.9	7.2e-08
WP_001096550.1|2750472_2751084_-	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.0	1.2e-91
WP_000929791.1|2751292_2751895_-	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	99.0	2.8e-109
WP_014343878.1|2751929_2752178_-	hypothetical protein	NA	A0A0U2C0C8	Salmonella_phage	100.0	1.6e-42
WP_001217669.1|2752294_2752528_-	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	5.6e-37
WP_000877757.1|2752770_2753403_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000664368.1|2753510_2754209_-	DUF550 domain-containing protein	NA	A0A0M4RTV1	Salmonella_phage	85.7	2.1e-63
WP_000801766.1|2754222_2754918_-	hypothetical protein	NA	G8C7U6	Escherichia_phage	45.4	2.1e-55
WP_000024044.1|2754914_2755799_-	replication protein	NA	K7PGT1	Enterobacteria_phage	47.2	1.3e-46
WP_010835408.1|2755890_2756265_-	hypothetical protein	NA	S4TTD7	Salmonella_phage	98.4	1.9e-63
WP_000643689.1|2756224_2756467_-	helix-turn-helix domain-containing protein	NA	A0A0M4QX15	Salmonella_phage	64.1	2.1e-23
WP_000660736.1|2756566_2756962_+	helix-turn-helix domain-containing protein	NA	K7PM35	Enterobacteria_phage	61.4	1.9e-37
WP_001111772.1|2757020_2757860_+	AAA family ATPase	NA	A0A1X9IGI7	Lactococcus_phage	33.3	1.5e-31
WP_000356948.1|2757852_2758239_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000950426.1|2758238_2758901_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000917562.1|2759357_2759516_+	hypothetical protein	NA	H6WRX3	Salmonella_phage	98.1	9.0e-23
WP_001539619.1|2759537_2759888_+	hypothetical protein	NA	S4TSN6	Salmonella_phage	97.4	1.1e-60
WP_000017123.1|2760014_2762942_+	PD-(D/E)XK nuclease-like domain-containing protein	NA	S4TNL0	Salmonella_phage	99.3	0.0e+00
WP_077248255.1|2762904_2764062_+	recombinase RecT	NA	S4TTE8	Salmonella_phage	99.5	3.9e-216
WP_001237031.1|2764104_2764344_+	DUF4060 family protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
WP_001670787.1|2764384_2764669_+	excisionase Xis	NA	H6WRW8	Salmonella_phage	86.2	3.1e-42
WP_087476737.1|2764646_2765876_-|integrase	site-specific integrase	integrase	H6WRW7	Salmonella_phage	94.1	6.4e-233
WP_000589087.1|2766373_2766853_-	SoxR-reducing system protein RseC	NA	NA	NA	NA	NA
WP_000812017.1|2766849_2767806_-	sigma-E factor regulatory protein RseB	NA	NA	NA	NA	NA
WP_001168374.1|2767805_2768456_-	anti-sigma-E factor RseA	NA	NA	NA	NA	NA
WP_000003307.1|2768487_2769063_-	RNA polymerase sigma factor RpoE	NA	NA	NA	NA	NA
WP_014344135.1|2769059_2769224_-	rpoE leader peptide RseD	NA	NA	NA	NA	NA
WP_000989177.1|2769487_2771110_+	L-aspartate oxidase	NA	NA	NA	NA	NA
WP_000083343.1|2771094_2771832_-|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	tRNA	NA	NA	NA	NA
WP_000219174.1|2771962_2773297_+	ATP-dependent RNA helicase SrmB	NA	A0A1B1IS59	uncultured_Mediterranean_phage	29.7	1.6e-43
WP_001526875.1|2773314_2774214_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000188414.1|2774316_2774904_+	cysteine/O-acetylserine transporter	NA	NA	NA	NA	NA
WP_000627811.1|2774965_2775349_-	autonomous glycyl radical cofactor GrcA	NA	Q7Y524	Enterobacteria_phage	74.0	6.1e-33
WP_000179978.1|2775667_2776357_+	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	49.5	4.6e-55
WP_000997368.1|2776472_2777510_-|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
2785414:2785430	attR	GTAGGCCGGATAAGGCG	NA	NA	NA	NA
>prophage 8
NZ_LT855376	Salmonella enterica subsp. enterica serovar Typhimurium isolate STMU2UK chromosome 1	4811399	4374440	4392334	4811399	plate,tail	Burkholderia_phage(47.37%)	22	NA	NA
WP_000368196.1|4374440_4376186_-|tail	tail fiber protein	tail	A0A0M3ULF6	Salmonella_phage	52.2	3.2e-52
WP_000359500.1|4376188_4376821_-|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	56.4	6.6e-24
WP_000951736.1|4376813_4377929_-|plate	baseplate J/gp47 family protein	plate	Q6QI99	Burkholderia_phage	52.2	1.8e-101
WP_001093501.1|4377919_4378279_-	GPW/gp25 family protein	NA	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
WP_001095011.1|4378442_4379990_-	membrane protein	NA	B9UDL6	Salmonella_phage	29.9	1.9e-48
WP_000703632.1|4379989_4380919_-	glycosyltransferase family 2 protein	NA	S5FKN0	Shigella_phage	83.8	8.8e-150
WP_000593182.1|4380915_4381278_-	GtrA family protein	NA	I1TED9	Salmonella_phage	70.8	1.2e-43
WP_000679398.1|4381605_4382328_-|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	41.0	3.3e-11
WP_000818154.1|4382337_4383381_-	phage late control D family protein	NA	Q6QIA2	Burkholderia_phage	45.1	2.5e-76
WP_001269716.1|4383368_4383578_-|tail	tail protein X	tail	A4JWL2	Burkholderia_virus	60.3	9.8e-17
WP_000271423.1|4383577_4384531_-	methyl-accepting chemotaxis protein	NA	A4JWL1	Burkholderia_virus	50.8	2.3e-36
WP_001262500.1|4384530_4386885_-|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	30.6	6.9e-66
WP_001185654.1|4386981_4387110_-|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_001003642.1|4387069_4387387_-|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_000907494.1|4387438_4387963_-|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
WP_000729852.1|4387962_4389390_-|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	70.9	1.1e-194
WP_000875314.1|4389379_4389577_-	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
WP_000449433.1|4389573_4390029_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000777266.1|4390188_4390503_-	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.1	6.4e-20
WP_001270441.1|4390515_4391121_-	lytic transglycosylase domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	59.9	2.5e-60
WP_001226442.1|4391123_4391411_-	membrane protein	NA	Q6QIC8	Burkholderia_phage	49.1	2.3e-16
WP_000615248.1|4391986_4392334_+	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
>prophage 1
NZ_LT855377	Salmonella enterica subsp. enterica serovar Typhimurium isolate STMU2UK plasmid 2	93862	40862	50158	93862	transposase	Escherichia_phage(28.57%)	11	NA	NA
WP_001541564.1|40862_41279_+	hypothetical protein	NA	O64348	Escherichia_phage	42.9	8.2e-07
WP_001527010.1|41462_41798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001541562.1|41854_42421_+	DUF2913 family protein	NA	NA	NA	NA	NA
WP_000728917.1|42452_43394_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	Q2A0A7	Sodalis_phage	54.3	2.0e-72
WP_000427676.1|43808_45014_+	AAA family ATPase	NA	A0A077SL49	Escherichia_phage	69.3	1.5e-162
WP_000064274.1|45013_45988_+	ParB/RepB/Spo0J family partition protein	NA	A0A1B0V750	Salmonella_phage	53.2	5.1e-84
WP_000457541.1|46069_47344_-	Y-family DNA polymerase	NA	F1C5A5	Cronobacter_phage	64.5	3.0e-156
WP_000925627.1|47343_47766_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	51.6	1.0e-28
WP_000490265.1|48276_48747_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000369839.1|48739_49096_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000088645.1|49477_50158_+	DNA methylase	NA	A0A2I7RE86	Vibrio_phage	36.4	1.6e-28
