assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900183985.1_NBC2815.1	NZ_LT853880	Xanthomonas fragariae strain NBC2815 chromosome 1	1	405998-407046	1,1,1,2	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas6f,cas7f,cas5f,cas3-cas2	DinG,cas6f,cas7f,cas5f,cas3-cas2,DEDDh,cas3,csa3,WYL	Unclear	TTTCTGAGCTGCCTACGCGGCAGTGAAC,TTTCTGAGCTGCCTACGCGGCAGTGAAC,TAGTTTTCTGAGCTGCCTACGCGGCAGTGAAC,TTTCTGAGCTGCCTACGCGGCAGTGAAC	28,28,32,28	0	0	NA	NA	I-F:I-F:I-F:I-F	17,17,12,12	17	Unclear	DinG,cas6f,cas7f,cas5f,cas3-cas2,DEDDh,cas3,csa3,WYL	NA|141aa|up_9|NZ_LT853880.1_394299_394722_+,NA	NA|141aa|up_9|NZ_LT853880.1_394299_394722_+	NA	NA|146aa|up_8|NZ_LT853880.1_394799_395237_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|172aa|up_7|NZ_LT853880.1_395347_395863_+	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated	NA|344aa|up_6|NZ_LT853880.1_395878_396910_+	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA|199aa|up_5|NZ_LT853880.1_397608_398205_-	TIGR04273, activator_of_XA21-mediated_immunity_Ax21, sulfation-dependent quorum factor, Ax21 family	NA|570aa|up_4|NZ_LT853880.1_398567_400277_+	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase	NA|159aa|up_3|NZ_LT853880.1_401262_401739_-	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL	NA|107aa|up_2|NZ_LT853880.1_402205_402526_+	pfam13698, DUF4156, Domain of unknown function (DUF4156)	NA|339aa|up_1|NZ_LT853880.1_402627_403644_+	PRK09258, PRK09258, 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed	NA|382aa|up_0|NZ_LT853880.1_404791_405936_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas6f|189aa|down_0|NZ_LT853880.1_407177_407744_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|346aa|down_1|NZ_LT853880.1_407748_408786_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|337aa|down_2|NZ_LT853880.1_408808_409819_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas3-cas2|1122aa|down_3|NZ_LT853880.1_411253_414619_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	NA|675aa|down_4|NZ_LT853880.1_415786_417811_-	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|537aa|down_5|NZ_LT853880.1_418054_419665_-	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain	NA|388aa|down_6|NZ_LT853880.1_419675_420839_-	cd01156, IVD, Isovaleryl-CoA dehydrogenase	NA|207aa|down_7|NZ_LT853880.1_420967_421588_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|173aa|down_8|NZ_LT853880.1_423027_423546_+	COG3245, CycB, Cytochrome c5 [Energy production and conversion]	NA|573aa|down_9|NZ_LT853880.1_423829_425548_+	COG2374, COG2374, Predicted extracellular nuclease [General function prediction only]
GCF_900183985.1_NBC2815.1	NZ_LT853880	Xanthomonas fragariae strain NBC2815 chromosome 1	2	3779378-3779478	2	CRISPRCasFinder	no		DinG,cas6f,cas7f,cas5f,cas3-cas2,DEDDh,cas3,csa3,WYL	Orphan	CTGGACAGCTTGCCACGCCTGCGCCGCACCAAGTCAGC	38	0	0	NA	NA	NA	1	1	Orphan	DinG,cas6f,cas7f,cas5f,cas3-cas2,DEDDh,cas3,csa3,WYL	NA|75aa|up_5|NZ_LT853880.1_3765216_3765441_+,NA|235aa|down_0|NZ_LT853880.1_3779644_3780349_+,NA|72aa|down_2|NZ_LT853880.1_3782501_3782717_-	NA|646aa|up_9|NZ_LT853880.1_3758259_3760197_-	PRK05454, PRK05454, glucans biosynthesis glucosyltransferase MdoH	NA|496aa|up_8|NZ_LT853880.1_3760795_3762283_-	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|469aa|up_7|NZ_LT853880.1_3762491_3763898_+	COG2730, BglC, Endoglucanase [Carbohydrate transport and metabolism]	NA|266aa|up_6|NZ_LT853880.1_3764259_3765058_+	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|75aa|up_5|NZ_LT853880.1_3765216_3765441_+	NA	NA|902aa|up_4|NZ_LT853880.1_3765494_3768200_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|964aa|up_3|NZ_LT853880.1_3768557_3771449_+	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|338aa|up_2|NZ_LT853880.1_3771532_3772546_-	PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated	NA|558aa|up_1|NZ_LT853880.1_3774778_3776452_+	PRK13272, treA, alpha,alpha-trehalase TreA	NA|304aa|up_0|NZ_LT853880.1_3778082_3778994_-	cd12837, EcCorA-like_u1, uncharacterized subgroup of the Escherichia coli Mg2+ transporter CorA_like subfamily	NA|235aa|down_0|NZ_LT853880.1_3779644_3780349_+	NA	NA|453aa|down_1|NZ_LT853880.1_3780508_3781867_-	PRK11049, PRK11049, D-alanine/D-serine/glycine permease; Provisional	NA|72aa|down_2|NZ_LT853880.1_3782501_3782717_-	NA	NA|287aa|down_3|NZ_LT853880.1_3784253_3785114_+	COG2521, COG2521, Predicted archaeal methyltransferase [General function prediction only]	NA|775aa|down_4|NZ_LT853880.1_3786695_3789020_+	pfam00930, DPPIV_N, Dipeptidyl peptidase IV (DPP IV) N-terminal region	NA|529aa|down_5|NZ_LT853880.1_3789909_3791496_+	COG1028, FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]	NA|2048aa|down_6|NZ_LT853880.1_3793426_3799570_-	PRK09169, PRK09169, hypothetical protein; Validated	NA|456aa|down_7|NZ_LT853880.1_3800505_3801873_-	pfam05598, DUF772, Transposase domain (DUF772)	NA|456aa|down_8|NZ_LT853880.1_3808281_3809649_-	pfam05598, DUF772, Transposase domain (DUF772)	NA|269aa|down_9|NZ_LT853880.1_3810449_3811256_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)
GCF_900183985.1_NBC2815.1	NZ_LT853880	Xanthomonas fragariae strain NBC2815 chromosome 1	3	3820341-3821089	2	CRT	no		DinG,cas6f,cas7f,cas5f,cas3-cas2,DEDDh,cas3,csa3,WYL	Orphan	TNCTGCCNTANCCGGCGNTCAGNNNGCTG	29	2	2	3820370-3820388|3820898-3820916	NZ_LT853880.1_3366964-3366982|NZ_LT853880.1_767171-767189	NA	15	15	Orphan	DinG,cas6f,cas7f,cas5f,cas3-cas2,DEDDh,cas3,csa3,WYL	NA|168aa|up_3|NZ_LT853880.1_3816260_3816764_-,NA|65aa|down_0|NZ_LT853880.1_3824519_3824714_+	NA|456aa|up_9|NZ_LT853880.1_3808281_3809649_-	pfam05598, DUF772, Transposase domain (DUF772)	NA|269aa|up_8|NZ_LT853880.1_3810449_3811256_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|149aa|up_7|NZ_LT853880.1_3812248_3812695_+	PRK05395, PRK05395, type II 3-dehydroquinate dehydratase	NA|166aa|up_6|NZ_LT853880.1_3812792_3813290_+	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein	NA|456aa|up_5|NZ_LT853880.1_3813748_3815116_+	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated	NA|307aa|up_4|NZ_LT853880.1_3815328_3816249_+	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|168aa|up_3|NZ_LT853880.1_3816260_3816764_-	NA	NA|126aa|up_2|NZ_LT853880.1_3816913_3817291_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|377aa|up_1|NZ_LT853880.1_3817742_3818873_+	pfam11906, DUF3426, Protein of unknown function (DUF3426)	NA|91aa|up_0|NZ_LT853880.1_3818989_3819262_+	PRK00430, fis, DNA-binding transcriptional regulator Fis	NA|65aa|down_0|NZ_LT853880.1_3824519_3824714_+	NA	NA|528aa|down_1|NZ_LT853880.1_3825251_3826835_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|432aa|down_2|NZ_LT853880.1_3826955_3828251_+	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional	NA|739aa|down_3|NZ_LT853880.1_3828468_3830685_+	TIGR01667, Uncharacterized_protein_HI_1680, integral membrane protein, YccS/YhfK family	NA|216aa|down_4|NZ_LT853880.1_3830802_3831450_-	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|641aa|down_5|NZ_LT853880.1_3833873_3835796_+	PRK06814, PRK06814, acyl-[ACP]--phospholipid O-acyltransferase	NA|115aa|down_6|NZ_LT853880.1_3836043_3836388_+	pfam04505, CD225, Interferon-induced transmembrane protein	NA|137aa|down_7|NZ_LT853880.1_3836387_3836798_+	pfam10825, DUF2752, Protein of unknown function (DUF2752)	NA|297aa|down_8|NZ_LT853880.1_3836851_3837742_-	COG3725, AmpE, Membrane protein required for beta-lactamase induction [Defense mechanisms]	NA|297aa|down_9|NZ_LT853880.1_3837815_3838706_-	COG2816, NPY1, NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
GCF_900183985.1_NBC2815.1	NZ_LT853880	Xanthomonas fragariae strain NBC2815 chromosome 1	4	3822499-3823332	3	CRT	no		DinG,cas6f,cas7f,cas5f,cas3-cas2,DEDDh,cas3,csa3,WYL	Orphan	NGTGCTGCCNTAGCCGGC	18	3	4	3822517-3822546|3822565-3822594|3822901-3822930|3822901-3822930	NZ_LT853880.1_3822373-3822402|NZ_LT853880.1_3822421-3822450|NZ_LT853880.1_3821605-3821634|NZ_LT853880.1_3821749-3821778	NA	17	17	Orphan	DinG,cas6f,cas7f,cas5f,cas3-cas2,DEDDh,cas3,csa3,WYL	NA|168aa|up_3|NZ_LT853880.1_3816260_3816764_-,NA|65aa|down_0|NZ_LT853880.1_3824519_3824714_+	NA|456aa|up_9|NZ_LT853880.1_3808281_3809649_-	pfam05598, DUF772, Transposase domain (DUF772)	NA|269aa|up_8|NZ_LT853880.1_3810449_3811256_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|149aa|up_7|NZ_LT853880.1_3812248_3812695_+	PRK05395, PRK05395, type II 3-dehydroquinate dehydratase	NA|166aa|up_6|NZ_LT853880.1_3812792_3813290_+	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein	NA|456aa|up_5|NZ_LT853880.1_3813748_3815116_+	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated	NA|307aa|up_4|NZ_LT853880.1_3815328_3816249_+	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|168aa|up_3|NZ_LT853880.1_3816260_3816764_-	NA	NA|126aa|up_2|NZ_LT853880.1_3816913_3817291_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|377aa|up_1|NZ_LT853880.1_3817742_3818873_+	pfam11906, DUF3426, Protein of unknown function (DUF3426)	NA|91aa|up_0|NZ_LT853880.1_3818989_3819262_+	PRK00430, fis, DNA-binding transcriptional regulator Fis	NA|65aa|down_0|NZ_LT853880.1_3824519_3824714_+	NA	NA|528aa|down_1|NZ_LT853880.1_3825251_3826835_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|432aa|down_2|NZ_LT853880.1_3826955_3828251_+	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional	NA|739aa|down_3|NZ_LT853880.1_3828468_3830685_+	TIGR01667, Uncharacterized_protein_HI_1680, integral membrane protein, YccS/YhfK family	NA|216aa|down_4|NZ_LT853880.1_3830802_3831450_-	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|641aa|down_5|NZ_LT853880.1_3833873_3835796_+	PRK06814, PRK06814, acyl-[ACP]--phospholipid O-acyltransferase	NA|115aa|down_6|NZ_LT853880.1_3836043_3836388_+	pfam04505, CD225, Interferon-induced transmembrane protein	NA|137aa|down_7|NZ_LT853880.1_3836387_3836798_+	pfam10825, DUF2752, Protein of unknown function (DUF2752)	NA|297aa|down_8|NZ_LT853880.1_3836851_3837742_-	COG3725, AmpE, Membrane protein required for beta-lactamase induction [Defense mechanisms]	NA|297aa|down_9|NZ_LT853880.1_3837815_3838706_-	COG2816, NPY1, NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
GCF_900183985.1_NBC2815.1	NZ_LT853880	Xanthomonas fragariae strain NBC2815 chromosome 1	5	3843930-3844137	3,3,4	PILER-CR,CRISPRCasFinder,CRT	no		DinG,cas6f,cas7f,cas5f,cas3-cas2,DEDDh,cas3,csa3,WYL	Orphan	GTTATTTCTGAGCTGCCTACGCGGCAGTGAAC,GTTCACTGCCGCGTAGGCAGCTCAGAAA,GTTCACTGCCGCGTAGGCAGCTCAGAAAT	32,28,29	0	0	NA	NA	I-F:I-F:I-F	2,3,3	3	Orphan	DinG,cas6f,cas7f,cas5f,cas3-cas2,DEDDh,cas3,csa3,WYL	NA,NA|729aa|down_0|NZ_LT853880.1_3845031_3847218_+	NA|216aa|up_9|NZ_LT853880.1_3830802_3831450_-	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|641aa|up_8|NZ_LT853880.1_3833873_3835796_+	PRK06814, PRK06814, acyl-[ACP]--phospholipid O-acyltransferase	NA|115aa|up_7|NZ_LT853880.1_3836043_3836388_+	pfam04505, CD225, Interferon-induced transmembrane protein	NA|137aa|up_6|NZ_LT853880.1_3836387_3836798_+	pfam10825, DUF2752, Protein of unknown function (DUF2752)	NA|297aa|up_5|NZ_LT853880.1_3836851_3837742_-	COG3725, AmpE, Membrane protein required for beta-lactamase induction [Defense mechanisms]	NA|297aa|up_4|NZ_LT853880.1_3837815_3838706_-	COG2816, NPY1, NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]	NA|509aa|up_3|NZ_LT853880.1_3839214_3840741_+	cd01184, INT_C_like_1, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain	NA|322aa|up_2|NZ_LT853880.1_3840962_3841929_+	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|215aa|up_1|NZ_LT853880.1_3842039_3842684_+	COG2977, EntD, Phosphopantetheinyl transferase component of siderophore synthetase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|382aa|up_0|NZ_LT853880.1_3842744_3843889_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|729aa|down_0|NZ_LT853880.1_3845031_3847218_+	NA	NA|723aa|down_1|NZ_LT853880.1_3847332_3849501_-	cd06456, M3A_DCP, Peptidase family M3, dipeptidyl carboxypeptidase (DCP)	NA|210aa|down_2|NZ_LT853880.1_3850074_3850704_-	cd07988, LPLAT_ABO13168-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ABO13168	NA|144aa|down_3|NZ_LT853880.1_3850706_3851138_-	PRK09256, PRK09256, aminoacyl-tRNA hydrolase	NA|181aa|down_4|NZ_LT853880.1_3851231_3851774_+	COG3184, COG3184, Uncharacterized protein conserved in bacteria [Function unknown]	NA|154aa|down_5|NZ_LT853880.1_3852316_3852778_+	pfam13899, Thioredoxin_7, Thioredoxin-like	NA|558aa|down_6|NZ_LT853880.1_3854492_3856166_-	PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB; Reviewed	NA|215aa|down_7|NZ_LT853880.1_3856162_3856807_-	COG3165, COG3165, Uncharacterized protein conserved in bacteria [Function unknown]	NA|53aa|down_8|NZ_LT853880.1_3857471_3857630_-	COG5487, COG5487, Small integral membrane protein [Function unknown]	NA|337aa|down_9|NZ_LT853880.1_3857695_3858706_-	cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs
