assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900183975.1_PD885.1	NZ_LT853882	Xanthomonas fragariae strain PD885 chromosome 1	1	379759-379966	1,1,1	CRT,CRISPRCasFinder,PILER-CR	no		DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,DEDDh,csa3,cas3,WYL	Orphan	ATTTCTGAGCTGCCTACGCGGCAGTGAAC,TTTCTGAGCTGCCTACGCGGCAGTGAAC,GATATTTCTGAGCTGCCTACGCGGCAGTGAAC	29,28,32	0	0	NA	NA	I-F:I-F:I-F	3,3,2	3	Orphan	DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,DEDDh,csa3,cas3,WYL	NA|729aa|up_0|NZ_LT853882.1_376677_378864_-,NA|158aa|down_7|NZ_LT853882.1_392936_393410_-	NA|337aa|up_9|NZ_LT853882.1_365191_366202_+	cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs	NA|53aa|up_8|NZ_LT853882.1_366267_366426_+	COG5487, COG5487, Small integral membrane protein [Function unknown]	NA|215aa|up_7|NZ_LT853882.1_367090_367735_+	COG3165, COG3165, Uncharacterized protein conserved in bacteria [Function unknown]	NA|558aa|up_6|NZ_LT853882.1_367731_369405_+	PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB; Reviewed	NA|154aa|up_5|NZ_LT853882.1_371117_371579_-	pfam13899, Thioredoxin_7, Thioredoxin-like	NA|181aa|up_4|NZ_LT853882.1_372121_372664_-	COG3184, COG3184, Uncharacterized protein conserved in bacteria [Function unknown]	NA|144aa|up_3|NZ_LT853882.1_372757_373189_+	PRK09256, PRK09256, aminoacyl-tRNA hydrolase	NA|210aa|up_2|NZ_LT853882.1_373191_373821_+	cd07988, LPLAT_ABO13168-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ABO13168	NA|723aa|up_1|NZ_LT853882.1_374394_376563_+	cd06456, M3A_DCP, Peptidase family M3, dipeptidyl carboxypeptidase (DCP)	NA|729aa|up_0|NZ_LT853882.1_376677_378864_-	NA	NA|49aa|down_0|NZ_LT853882.1_381198_381345_+	cd02892, SQCY_1, Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold	NA|500aa|down_1|NZ_LT853882.1_381890_383390_-	PRK00047, glpK, glycerol kinase GlpK	NA|274aa|down_2|NZ_LT853882.1_383531_384353_-	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]	NA|504aa|down_3|NZ_LT853882.1_384531_386043_-	PRK12266, glpD, glycerol-3-phosphate dehydrogenase; Reviewed	NA|276aa|down_4|NZ_LT853882.1_386270_387098_-	PRK10906, PRK10906, DeoR/GlpR family transcriptional regulator	NA|287aa|down_5|NZ_LT853882.1_388075_388936_+	cd05145, RIO1_like, Catalytic domain of the atypical protein serine kinases, RIO1 and RIO3 kinases and similar proteins	NA|635aa|down_6|NZ_LT853882.1_390451_392356_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|158aa|down_7|NZ_LT853882.1_392936_393410_-	NA	NA|320aa|down_8|NZ_LT853882.1_393568_394528_+	PLN02970, PLN02970, serine racemase	NA|206aa|down_9|NZ_LT853882.1_394512_395130_+	cd06259, YdcF-like, YdcF-like
GCF_900183975.1_PD885.1	NZ_LT853882	Xanthomonas fragariae strain PD885 chromosome 1	2	630749-633236	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1	DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,DEDDh,csa3,cas3,WYL	Type I-F	TTTCTGAGCTGCCTACGCGGCAGTGAAC,TTTCTGAGCTGCCTACGCGGCAGTGAAC,TTTCTGAGCTGCCTACGCGGCAGTGAAC	28,28,28	4	5	631197-631228|631197-631228|631917-631948|632217-632248|632877-632908	NZ_LT853882.1_2178370-2178401|NZ_LT853882.1_2185271-2185302|NZ_LT853882.1_2193194-2193225|NZ_LT853882.1_2192823-2192854|NZ_LT853882.1_2189066-2189035	I-F:I-F:I-F	41,41,41	41	TypeI-F	DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,DEDDh,csa3,cas3,WYL	NA,NA	NA|668aa|up_9|NZ_LT853882.1_613793_615797_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|484aa|up_8|NZ_LT853882.1_615796_617248_+	COG3182, PiuB, Uncharacterized iron-regulated membrane protein [Function unknown]	NA|243aa|up_7|NZ_LT853882.1_617248_617977_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|569aa|up_6|NZ_LT853882.1_617973_619680_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|616aa|up_5|NZ_LT853882.1_619803_621651_-	TIGR01931, Sulfite_reductase_flavoprotein_alpha-component, sulfite reductase [NADPH] flavoprotein, alpha-component	NA|302aa|up_4|NZ_LT853882.1_621832_622738_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|659aa|up_3|NZ_LT853882.1_622737_624714_+	PRK05506, PRK05506, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional	NA|356aa|up_2|NZ_LT853882.1_624976_626044_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|1042aa|up_1|NZ_LT853882.1_626040_629166_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|382aa|up_0|NZ_LT853882.1_629542_630687_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas6f|189aa|down_0|NZ_LT853882.1_633367_633934_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|346aa|down_1|NZ_LT853882.1_633938_634976_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|337aa|down_2|NZ_LT853882.1_634998_636009_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|452aa|down_3|NZ_LT853882.1_636005_637361_-	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas3-cas2|1122aa|down_4|NZ_LT853882.1_637439_640805_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|330aa|down_5|NZ_LT853882.1_640801_641791_-	cd09718, Cas1_I-F, CRISPR/Cas system-associated protein Cas1	NA|675aa|down_6|NZ_LT853882.1_641971_643996_-	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|537aa|down_7|NZ_LT853882.1_644239_645850_-	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain	NA|388aa|down_8|NZ_LT853882.1_645860_647024_-	cd01156, IVD, Isovaleryl-CoA dehydrogenase	NA|207aa|down_9|NZ_LT853882.1_647152_647773_+	COG1309, AcrR, Transcriptional regulator [Transcription]
GCF_900183975.1_PD885.1	NZ_LT853882	Xanthomonas fragariae strain PD885 chromosome 1	3	720512-720919	3	CRISPRCasFinder	no		DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,DEDDh,csa3,cas3,WYL	Orphan	GGTTATGGCAGTACCCAGACTGC	23	0	0	NA	NA	NA	8	8	Orphan	DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,DEDDh,csa3,cas3,WYL	NA|70aa|up_0|NZ_LT853882.1_717159_717369_-,NA|168aa|down_3|NZ_LT853882.1_725224_725728_+	NA|509aa|up_9|NZ_LT853882.1_701118_702645_-	cd01184, INT_C_like_1, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain	NA|297aa|up_8|NZ_LT853882.1_703153_704044_+	COG2816, NPY1, NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]	NA|297aa|up_7|NZ_LT853882.1_704117_705008_+	COG3725, AmpE, Membrane protein required for beta-lactamase induction [Defense mechanisms]	NA|137aa|up_6|NZ_LT853882.1_705061_705472_-	pfam10825, DUF2752, Protein of unknown function (DUF2752)	NA|115aa|up_5|NZ_LT853882.1_705471_705816_-	pfam04505, CD225, Interferon-induced transmembrane protein	NA|641aa|up_4|NZ_LT853882.1_706063_707986_-	PRK06814, PRK06814, acyl-[ACP]--phospholipid O-acyltransferase	NA|739aa|up_3|NZ_LT853882.1_711188_713405_-	TIGR01667, Uncharacterized_protein_HI_1680, integral membrane protein, YccS/YhfK family	NA|432aa|up_2|NZ_LT853882.1_713622_714918_-	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional	NA|528aa|up_1|NZ_LT853882.1_715038_716622_-	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|70aa|up_0|NZ_LT853882.1_717159_717369_-	NA	NA|91aa|down_0|NZ_LT853882.1_722754_723027_-	PRK00430, fis, DNA-binding transcriptional regulator Fis	NA|377aa|down_1|NZ_LT853882.1_723143_724274_-	pfam11906, DUF3426, Protein of unknown function (DUF3426)	NA|126aa|down_2|NZ_LT853882.1_724697_725075_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|168aa|down_3|NZ_LT853882.1_725224_725728_+	NA	NA|307aa|down_4|NZ_LT853882.1_725739_726660_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|456aa|down_5|NZ_LT853882.1_726872_728240_-	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated	NA|164aa|down_6|NZ_LT853882.1_728698_729190_-	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein	NA|149aa|down_7|NZ_LT853882.1_729287_729734_-	PRK05395, PRK05395, type II 3-dehydroquinate dehydratase	NA|269aa|down_8|NZ_LT853882.1_730726_731533_+	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|456aa|down_9|NZ_LT853882.1_732329_733697_+	pfam05598, DUF772, Transposase domain (DUF772)
GCF_900183975.1_PD885.1	NZ_LT853882	Xanthomonas fragariae strain PD885 chromosome 1	4	720929-721677	3,4	CRT,CRISPRCasFinder	no		DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,DEDDh,csa3,cas3,WYL	Orphan	AGCNNNCTGANCGCCGGNTANGGCAGNAC,GGTTATGGCAGTACCCAGACTGC	29,23	5	7	720958-720976|721102-721120|721246-721264|721630-721648|721495-721519|721495-721519|721495-721519	NZ_LT853882.1_54576-54594|NZ_LT853882.1_3787988-3788006|NZ_LT853882.1_1425927-1425909|NZ_LT853882.1_3326699-3326681|NZ_LT853882.1_718951-718975|NZ_LT853882.1_720247-720271|NZ_LT853882.1_720391-720415	NA:NA	15,10	15	Orphan	DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,DEDDh,csa3,cas3,WYL	NA|70aa|up_0|NZ_LT853882.1_717159_717369_-,NA|168aa|down_3|NZ_LT853882.1_725224_725728_+	NA|509aa|up_9|NZ_LT853882.1_701118_702645_-	cd01184, INT_C_like_1, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain	NA|297aa|up_8|NZ_LT853882.1_703153_704044_+	COG2816, NPY1, NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]	NA|297aa|up_7|NZ_LT853882.1_704117_705008_+	COG3725, AmpE, Membrane protein required for beta-lactamase induction [Defense mechanisms]	NA|137aa|up_6|NZ_LT853882.1_705061_705472_-	pfam10825, DUF2752, Protein of unknown function (DUF2752)	NA|115aa|up_5|NZ_LT853882.1_705471_705816_-	pfam04505, CD225, Interferon-induced transmembrane protein	NA|641aa|up_4|NZ_LT853882.1_706063_707986_-	PRK06814, PRK06814, acyl-[ACP]--phospholipid O-acyltransferase	NA|739aa|up_3|NZ_LT853882.1_711188_713405_-	TIGR01667, Uncharacterized_protein_HI_1680, integral membrane protein, YccS/YhfK family	NA|432aa|up_2|NZ_LT853882.1_713622_714918_-	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional	NA|528aa|up_1|NZ_LT853882.1_715038_716622_-	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|70aa|up_0|NZ_LT853882.1_717159_717369_-	NA	NA|91aa|down_0|NZ_LT853882.1_722754_723027_-	PRK00430, fis, DNA-binding transcriptional regulator Fis	NA|377aa|down_1|NZ_LT853882.1_723143_724274_-	pfam11906, DUF3426, Protein of unknown function (DUF3426)	NA|126aa|down_2|NZ_LT853882.1_724697_725075_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|168aa|down_3|NZ_LT853882.1_725224_725728_+	NA	NA|307aa|down_4|NZ_LT853882.1_725739_726660_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|456aa|down_5|NZ_LT853882.1_726872_728240_-	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated	NA|164aa|down_6|NZ_LT853882.1_728698_729190_-	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein	NA|149aa|down_7|NZ_LT853882.1_729287_729734_-	PRK05395, PRK05395, type II 3-dehydroquinate dehydratase	NA|269aa|down_8|NZ_LT853882.1_730726_731533_+	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|456aa|down_9|NZ_LT853882.1_732329_733697_+	pfam05598, DUF772, Transposase domain (DUF772)
GCF_900183975.1_PD885.1	NZ_LT853882	Xanthomonas fragariae strain PD885 chromosome 1	5	3731053-3731153	5	CRISPRCasFinder	no		DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,DEDDh,csa3,cas3,WYL	Orphan	CTGGACAGCTTGCCACGCCTGCGCCGCACCAAGTCAGC	38	0	0	NA	NA	NA	1	1	Orphan	DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,DEDDh,csa3,cas3,WYL	NA,NA|235aa|down_0|NZ_LT853882.1_3731319_3732024_+,NA|72aa|down_2|NZ_LT853882.1_3734161_3734377_-	NA|223aa|up_9|NZ_LT853882.1_3709120_3709789_-	COG0400, COG0400, Predicted esterase [General function prediction only]	NA|646aa|up_8|NZ_LT853882.1_3709938_3711876_-	PRK05454, PRK05454, glucans biosynthesis glucosyltransferase MdoH	NA|496aa|up_7|NZ_LT853882.1_3712474_3713962_-	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|469aa|up_6|NZ_LT853882.1_3714170_3715577_+	COG2730, BglC, Endoglucanase [Carbohydrate transport and metabolism]	NA|902aa|up_5|NZ_LT853882.1_3717170_3719876_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|964aa|up_4|NZ_LT853882.1_3720233_3723125_+	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|357aa|up_3|NZ_LT853882.1_3723151_3724222_-	PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated	NA|558aa|up_2|NZ_LT853882.1_3726454_3728128_+	PRK13272, treA, alpha,alpha-trehalase TreA	NA|232aa|up_1|NZ_LT853882.1_3728514_3729210_+	COG2013, COG2013, Uncharacterized conserved protein [Function unknown]	NA|304aa|up_0|NZ_LT853882.1_3729757_3730669_-	cd12837, EcCorA-like_u1, uncharacterized subgroup of the Escherichia coli Mg2+ transporter CorA_like subfamily	NA|235aa|down_0|NZ_LT853882.1_3731319_3732024_+	NA	NA|453aa|down_1|NZ_LT853882.1_3732183_3733542_-	PRK11049, PRK11049, D-alanine/D-serine/glycine permease; Provisional	NA|72aa|down_2|NZ_LT853882.1_3734161_3734377_-	NA	NA|287aa|down_3|NZ_LT853882.1_3735913_3736774_+	COG2521, COG2521, Predicted archaeal methyltransferase [General function prediction only]	NA|364aa|down_4|NZ_LT853882.1_3736982_3738074_+	pfam07759, DUF1615, Protein of unknown function (DUF1615)	NA|775aa|down_5|NZ_LT853882.1_3738356_3740681_+	pfam00930, DPPIV_N, Dipeptidyl peptidase IV (DPP IV) N-terminal region	NA|529aa|down_6|NZ_LT853882.1_3741570_3743157_+	COG1028, FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]	NA|261aa|down_7|NZ_LT853882.1_3744073_3744855_+	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|2134aa|down_8|NZ_LT853882.1_3745088_3751490_-	PRK09169, PRK09169, hypothetical protein; Validated	NA|347aa|down_9|NZ_LT853882.1_3751853_3752894_-	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family
