assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900183405.1_ASM90018340v1	NZ_LT854705	Lactobacillus zymae strain ACA-DC 3411 chromosome I	1	185878-186309	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2,csn2,cas14j	cas9,cas1,cas2,csn2,cas14j,cas3,DEDDh,DinG,csa3,WYL	Type II-C,Type II-A,Type II-B	GTTTTAGATGAGTGGTAAATCTAGAAGGTCAAAAGC,GTTTTAGATGAGTGGTAAATCTA,GTTTTAGATGAGTGGTAAATCTAGAAGGTCAAAAGC	36,23,36	0	0	NA	NA	NA:NA:NA	5,6,6	6	TypeV,TypeII-C,TypeII-A,TypeII-B	cas9,cas1,cas2,csn2,cas14j,cas3,DEDDh,DinG,csa3,WYL	NA,NA|107aa|down_7|NZ_LT854705.1_192993_193314_+	NA|459aa|up_9|NZ_LT854705.1_170220_171597_+	PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed	NA|634aa|up_8|NZ_LT854705.1_171836_173738_+	cd07412, MPP_YhcR_N, Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain	NA|222aa|up_7|NZ_LT854705.1_174128_174794_-	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]	NA|339aa|up_6|NZ_LT854705.1_175085_176102_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|631aa|up_5|NZ_LT854705.1_176672_178565_+	PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha; Reviewed	NA|322aa|up_4|NZ_LT854705.1_178545_179511_+	smart01038, Bgal_small_N, Beta galactosidase small chain	cas9|1351aa|up_3|NZ_LT854705.1_179730_183783_+	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	cas1|302aa|up_2|NZ_LT854705.1_183991_184897_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|102aa|up_1|NZ_LT854705.1_184874_185180_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|222aa|up_0|NZ_LT854705.1_185176_185842_+	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	NA|308aa|down_0|NZ_LT854705.1_186401_187325_-	TIGR02152, Putative_ribokinase, ribokinase	NA|120aa|down_1|NZ_LT854705.1_187439_187799_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|326aa|down_2|NZ_LT854705.1_187907_188885_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|278aa|down_3|NZ_LT854705.1_189023_189857_-	pfam13612, DDE_Tnp_1_3, Transposase DDE domain	cas14j|388aa|down_4|NZ_LT854705.1_190120_191284_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|143aa|down_5|NZ_LT854705.1_191616_192045_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|196aa|down_6|NZ_LT854705.1_192098_192686_+	COG2364, COG2364, Predicted membrane protein [Function unknown]	NA|107aa|down_7|NZ_LT854705.1_192993_193314_+	NA	NA|239aa|down_8|NZ_LT854705.1_193414_194131_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|311aa|down_9|NZ_LT854705.1_194212_195145_+	PRK10443, rihA, ribonucleoside hydrolase 1; Provisional
GCF_900183405.1_ASM90018340v1	NZ_LT854705	Lactobacillus zymae strain ACA-DC 3411 chromosome I	2	378131-378524	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no		cas9,cas1,cas2,csn2,cas14j,cas3,DEDDh,DinG,csa3,WYL	Orphan	GTATTCCCCACATGTGTGGGGGTGATTC,GTATTCCCCACATGTGTGGGGGTGATTC,GTATTCCCCACATGTGTGGGGGTGATTC	28,28,28	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B	5,6,6	6	Orphan	cas9,cas1,cas2,csn2,cas14j,cas3,DEDDh,DinG,csa3,WYL	NA|171aa|up_6|NZ_LT854705.1_371066_371579_-,NA	NA|322aa|up_9|NZ_LT854705.1_365722_366688_+	cd06294, PBP1_MalR-like, ligand-binding domain of maltose transcription regulator MalR which is a member of the LacI-GalR family repressors	NA|457aa|up_8|NZ_LT854705.1_367235_368606_+	cd17313, MFS_SLC45_SUC, Solute carrier family 45 and similar sugar transporters of the Major Facilitator Superfamily of transporters	NA|758aa|up_7|NZ_LT854705.1_368733_371007_+	PRK13807, PRK13807, maltose phosphorylase; Provisional	NA|171aa|up_6|NZ_LT854705.1_371066_371579_-	NA	NA|90aa|up_5|NZ_LT854705.1_371807_372077_-	PRK08881, rpsN, 30S ribosomal protein S14; Reviewed	NA|344aa|up_4|NZ_LT854705.1_372205_373237_-	cd09019, galactose_mutarotase_like, galactose mutarotase_like	NA|272aa|up_3|NZ_LT854705.1_373528_374344_+	pfam06028, DUF915, Alpha/beta hydrolase of unknown function (DUF915)	NA|273aa|up_2|NZ_LT854705.1_374380_375199_-	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase	NA|128aa|up_1|NZ_LT854705.1_375453_375837_+	COG1846, MarR, Transcriptional regulators [Transcription]	NA|616aa|up_0|NZ_LT854705.1_375986_377834_+	COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane]	NA|143aa|down_0|NZ_LT854705.1_379027_379456_+	cd03032, ArsC_Spx, Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes	NA|259aa|down_1|NZ_LT854705.1_379511_380288_-	pfam00877, NLPC_P60, NlpC/P60 family	NA|762aa|down_2|NZ_LT854705.1_380772_383058_+	NF033187, internalin_J, class 1 internalin InlJ	NA|339aa|down_3|NZ_LT854705.1_383267_384284_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|310aa|down_4|NZ_LT854705.1_384470_385400_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|688aa|down_5|NZ_LT854705.1_385492_387556_+	PRK10819, PRK10819, transport protein TonB; Provisional	NA|349aa|down_6|NZ_LT854705.1_387686_388733_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|333aa|down_7|NZ_LT854705.1_388967_389966_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|310aa|down_8|NZ_LT854705.1_390108_391038_+	PRK08230, PRK08230, tartrate dehydratase subunit alpha; Validated	NA|204aa|down_9|NZ_LT854705.1_391037_391649_+	PRK08228, PRK08228, L(+)-tartrate dehydratase subunit beta; Validated
GCF_900183405.1_ASM90018340v1	NZ_LT854705	Lactobacillus zymae strain ACA-DC 3411 chromosome I	3	816550-816760	3	CRISPRCasFinder	no	DEDDh	cas9,cas1,cas2,csn2,cas14j,cas3,DEDDh,DinG,csa3,WYL	Unclear	GTATTCCCCACACGTGTGGGGGTGATTC	28	0	0	NA	NA	I-E,II-B	3	3	Orphan	cas9,cas1,cas2,csn2,cas14j,cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|421aa|up_9|NZ_LT854705.1_804790_806053_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|238aa|up_8|NZ_LT854705.1_806927_807641_+	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional	NA|326aa|up_7|NZ_LT854705.1_807688_808666_+	PRK09653, eutD, phosphotransacetylase	NA|159aa|up_6|NZ_LT854705.1_808858_809335_+	pfam02367, TsaE, Threonylcarbamoyl adenosine biosynthesis protein TsaE	NA|178aa|up_5|NZ_LT854705.1_809327_809861_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|566aa|up_4|NZ_LT854705.1_809886_811584_-	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	DEDDh|179aa|up_3|NZ_LT854705.1_811812_812349_-	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|255aa|up_2|NZ_LT854705.1_812370_813135_-	cd09087, Ape1-like_AP-endo, Human Ape1-like subfamily of the ExoIII family apurinic/apyrimidinic (AP) endonucleases	NA|304aa|up_1|NZ_LT854705.1_813413_814325_+	PRK13905, murB, UDP-N-acetylmuramate dehydrogenase	NA|711aa|up_0|NZ_LT854705.1_814340_816473_+	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|218aa|down_0|NZ_LT854705.1_816819_817473_-	pfam07099, DUF1361, Protein of unknown function (DUF1361)	NA|283aa|down_1|NZ_LT854705.1_817760_818609_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|321aa|down_2|NZ_LT854705.1_818608_819571_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|453aa|down_3|NZ_LT854705.1_819609_820968_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|605aa|down_4|NZ_LT854705.1_821309_823124_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|152aa|down_5|NZ_LT854705.1_823342_823798_+	pfam01797, Y1_Tnp, Transposase IS200 like	NA|1108aa|down_6|NZ_LT854705.1_824342_827666_+	TIGR04320, hypothetical_protein, SEC10/PgrA surface exclusion domain	NA|235aa|down_7|NZ_LT854705.1_828132_828837_+	cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium	NA|477aa|down_8|NZ_LT854705.1_828933_830364_+	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|362aa|down_9|NZ_LT854705.1_830567_831653_+	COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
GCF_900183405.1_ASM90018340v1	NZ_LT854705	Lactobacillus zymae strain ACA-DC 3411 chromosome I	4	845372-845522	4	CRISPRCasFinder	no		cas9,cas1,cas2,csn2,cas14j,cas3,DEDDh,DinG,csa3,WYL	Orphan	GTATTCCCCACACGTGTGGGGGTGATTC	28	0	0	NA	NA	I-E,II-B	2	2	Orphan	cas9,cas1,cas2,csn2,cas14j,cas3,DEDDh,DinG,csa3,WYL	NA|58aa|up_2|NZ_LT854705.1_843802_843976_+,NA|61aa|up_0|NZ_LT854705.1_844848_845031_+,NA|165aa|down_1|NZ_LT854705.1_846535_847030_+,NA|262aa|down_5|NZ_LT854705.1_849472_850258_+	NA|187aa|up_9|NZ_LT854705.1_835592_836153_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|309aa|up_8|NZ_LT854705.1_836247_837174_-	TIGR03706, exo_poly_only, exopolyphosphatase	NA|723aa|up_7|NZ_LT854705.1_837170_839339_-	PRK05443, PRK05443, polyphosphate kinase; Provisional	NA|511aa|up_6|NZ_LT854705.1_839335_840868_-	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]	NA|114aa|up_5|NZ_LT854705.1_841080_841422_-	pfam04991, LicD, LicD family	NA|339aa|up_4|NZ_LT854705.1_841505_842522_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|151aa|up_3|NZ_LT854705.1_843320_843773_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|58aa|up_2|NZ_LT854705.1_843802_843976_+	NA	NA|153aa|up_1|NZ_LT854705.1_844020_844479_-	pfam02566, OsmC, OsmC-like protein	NA|61aa|up_0|NZ_LT854705.1_844848_845031_+	NA	NA|124aa|down_0|NZ_LT854705.1_845952_846324_-	pfam06993, DUF1304, Protein of unknown function (DUF1304)	NA|165aa|down_1|NZ_LT854705.1_846535_847030_+	NA	NA|125aa|down_2|NZ_LT854705.1_847183_847558_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|342aa|down_3|NZ_LT854705.1_847645_848671_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|240aa|down_4|NZ_LT854705.1_848766_849486_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|262aa|down_5|NZ_LT854705.1_849472_850258_+	NA	NA|228aa|down_6|NZ_LT854705.1_850312_850996_-	pfam00877, NLPC_P60, NlpC/P60 family	NA|308aa|down_7|NZ_LT854705.1_852018_852942_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|420aa|down_8|NZ_LT854705.1_853052_854312_+	PRK00402, PRK00402, 3-isopropylmalate dehydratase large subunit; Reviewed	NA|173aa|down_9|NZ_LT854705.1_854311_854830_+	PRK00439, leuD, 3-isopropylmalate dehydratase small subunit; Reviewed
GCF_900183405.1_ASM90018340v1	NZ_LT854705	Lactobacillus zymae strain ACA-DC 3411 chromosome I	5	901606-901938	3,3,5	CRT,PILER-CR,CRISPRCasFinder	no		cas9,cas1,cas2,csn2,cas14j,cas3,DEDDh,DinG,csa3,WYL	Orphan	GNGTTCCCCACAGGTNTGGGGGTGATTC,GTTCCCCACAGGTGTGGGGGTGATTC,GTTCCCCACAGGTATGGGGGTGATTCTA	28,26,28	0	0	NA	NA	NA:I-E,II-B:NA	5,4,4	5	Orphan	cas9,cas1,cas2,csn2,cas14j,cas3,DEDDh,DinG,csa3,WYL	NA|64aa|up_6|NZ_LT854705.1_894749_894941_+,NA|441aa|down_0|NZ_LT854705.1_902299_903622_+	NA|474aa|up_9|NZ_LT854705.1_890599_892021_+	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|335aa|up_8|NZ_LT854705.1_892043_893048_+	PRK13055, PRK13055, putative lipid kinase; Reviewed	NA|457aa|up_7|NZ_LT854705.1_893142_894513_+	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|64aa|up_6|NZ_LT854705.1_894749_894941_+	NA	NA|342aa|up_5|NZ_LT854705.1_895021_896047_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|310aa|up_4|NZ_LT854705.1_896174_897104_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|349aa|up_3|NZ_LT854705.1_897791_898838_-	cd02932, OYE_YqiM_FMN, Old yellow enzyme (OYE) YqjM-like FMN binding domain	NA|123aa|up_2|NZ_LT854705.1_898987_899356_+	pfam01243, Putative_PNPOx, Pyridoxamine 5'-phosphate oxidase	NA|246aa|up_1|NZ_LT854705.1_899535_900273_-	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|407aa|up_0|NZ_LT854705.1_900282_901503_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|441aa|down_0|NZ_LT854705.1_902299_903622_+	NA	NA|290aa|down_1|NZ_LT854705.1_903960_904830_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|289aa|down_2|NZ_LT854705.1_904947_905814_+	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR)	NA|288aa|down_3|NZ_LT854705.1_905831_906695_+	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR)	NA|230aa|down_4|NZ_LT854705.1_907049_907739_+	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional	NA|396aa|down_5|NZ_LT854705.1_907772_908960_+	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|235aa|down_6|NZ_LT854705.1_908985_909690_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|317aa|down_7|NZ_LT854705.1_909752_910703_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|433aa|down_8|NZ_LT854705.1_910815_912114_+	PRK06078, PRK06078, pyrimidine-nucleoside phosphorylase; Reviewed	NA|476aa|down_9|NZ_LT854705.1_912669_914097_+	PRK02471, PRK02471, bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB
GCF_900183405.1_ASM90018340v1	NZ_LT854705	Lactobacillus zymae strain ACA-DC 3411 chromosome I	6	1224764-1225037	4,6,4	PILER-CR,CRISPRCasFinder,CRT	no		cas9,cas1,cas2,csn2,cas14j,cas3,DEDDh,DinG,csa3,WYL	Orphan	GTATTCCCCACATGTGTGGGGGTGATTCCG,GTATTCCCCACATGTGTGGGGGTGATTC,GTATTCCCCACATGTGTGGGGGTGATTCCG	30,28,30	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B	3,4,4	4	Orphan	cas9,cas1,cas2,csn2,cas14j,cas3,DEDDh,DinG,csa3,WYL	NA,NA|90aa|down_0|NZ_LT854705.1_1225191_1225461_+,NA|69aa|down_1|NZ_LT854705.1_1225496_1225703_-,NA|122aa|down_2|NZ_LT854705.1_1225745_1226111_-,NA|89aa|down_4|NZ_LT854705.1_1226850_1227117_+,NA|106aa|down_5|NZ_LT854705.1_1227490_1227808_+,NA|116aa|down_8|NZ_LT854705.1_1229674_1230022_+	NA|346aa|up_9|NZ_LT854705.1_1212876_1213914_+	PRK00082, hrcA, heat-inducible transcription repressor; Provisional	NA|201aa|up_8|NZ_LT854705.1_1213935_1214538_+	PRK14162, PRK14162, heat shock protein GrpE; Provisional	NA|630aa|up_7|NZ_LT854705.1_1214573_1216463_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|383aa|up_6|NZ_LT854705.1_1216590_1217739_+	PRK14276, PRK14276, chaperone protein DnaJ; Provisional	NA|50aa|up_5|NZ_LT854705.1_1218046_1218196_+	pfam12459, DUF3687, D-Ala-teichoic acid biosynthesis protein	NA|509aa|up_4|NZ_LT854705.1_1218236_1219763_+	PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit DltA	NA|404aa|up_3|NZ_LT854705.1_1219762_1220974_+	TIGR04091, hypothetical_protein, D-alanyl-lipoteichoic acid biosynthesis protein DltB	NA|78aa|up_2|NZ_LT854705.1_1221016_1221250_+	PRK05087, PRK05087, D-alanine--poly(phosphoribitol) ligase subunit DltC	NA|430aa|up_1|NZ_LT854705.1_1221253_1222543_+	TIGR04092, hypothetical_protein, D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA|612aa|up_0|NZ_LT854705.1_1222663_1224499_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|90aa|down_0|NZ_LT854705.1_1225191_1225461_+	NA	NA|69aa|down_1|NZ_LT854705.1_1225496_1225703_-	NA	NA|122aa|down_2|NZ_LT854705.1_1225745_1226111_-	NA	NA|126aa|down_3|NZ_LT854705.1_1226243_1226621_-	PRK00567, mscL, large-conductance mechanosensitive channel protein MscL	NA|89aa|down_4|NZ_LT854705.1_1226850_1227117_+	NA	NA|106aa|down_5|NZ_LT854705.1_1227490_1227808_+	NA	NA|317aa|down_6|NZ_LT854705.1_1227900_1228851_+	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|247aa|down_7|NZ_LT854705.1_1228854_1229595_+	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|116aa|down_8|NZ_LT854705.1_1229674_1230022_+	NA	NA|743aa|down_9|NZ_LT854705.1_1230039_1232268_+	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
GCF_900183405.1_ASM90018340v1	NZ_LT854705	Lactobacillus zymae strain ACA-DC 3411 chromosome I	7	2202770-2202869	7	CRISPRCasFinder	no		cas9,cas1,cas2,csn2,cas14j,cas3,DEDDh,DinG,csa3,WYL	Orphan	GTCATGTGACTGCTGGATGAACTGTCGA	28	0	0	NA	NA	NA	1	1	Orphan	cas9,cas1,cas2,csn2,cas14j,cas3,DEDDh,DinG,csa3,WYL	NA|104aa|up_4|NZ_LT854705.1_2198485_2198797_-,NA|84aa|up_2|NZ_LT854705.1_2200455_2200707_-,NA|73aa|up_1|NZ_LT854705.1_2200754_2200973_-,NA	NA|449aa|up_9|NZ_LT854705.1_2190959_2192306_-	PRK11357, frlA, amino acid permease	NA|460aa|up_8|NZ_LT854705.1_2192533_2193913_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|339aa|up_7|NZ_LT854705.1_2194078_2195095_-	cd01320, ADA, Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively	NA|450aa|up_6|NZ_LT854705.1_2195264_2196614_+	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|590aa|up_5|NZ_LT854705.1_2196623_2198393_+	COG1001, AdeC, Adenine deaminase [Nucleotide transport and metabolism]	NA|104aa|up_4|NZ_LT854705.1_2198485_2198797_-	NA	NA|339aa|up_3|NZ_LT854705.1_2198880_2199897_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|84aa|up_2|NZ_LT854705.1_2200455_2200707_-	NA	NA|73aa|up_1|NZ_LT854705.1_2200754_2200973_-	NA	NA|231aa|up_0|NZ_LT854705.1_2201235_2201928_-	PRK14116, gpmA, 2,3-diphosphoglycerate-dependent phosphoglycerate mutase	NA|369aa|down_0|NZ_LT854705.1_2203848_2204955_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|395aa|down_1|NZ_LT854705.1_2205197_2206382_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|309aa|down_2|NZ_LT854705.1_2206882_2207809_-	pfam06933, SSP160, Special lobe-specific silk protein SSP160	NA|398aa|down_3|NZ_LT854705.1_2208005_2209199_+	COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]	NA|115aa|down_4|NZ_LT854705.1_2209772_2210117_-	pfam05437, AzlD, Branched-chain amino acid transport protein (AzlD)	NA|268aa|down_5|NZ_LT854705.1_2210135_2210939_-	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]	NA|1104aa|down_6|NZ_LT854705.1_2211179_2214491_-	TIGR03062, hypothetical_protein_lp_1332, YhgE/Pip C-terminal domain	NA|436aa|down_7|NZ_LT854705.1_2214931_2216239_-	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]	NA|392aa|down_8|NZ_LT854705.1_2216310_2217486_-	COG5002, VicK, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|230aa|down_9|NZ_LT854705.1_2217496_2218186_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_900183405.1_ASM90018340v1	NZ_LT854705	Lactobacillus zymae strain ACA-DC 3411 chromosome I	8	2209366-2209574	8,5	CRISPRCasFinder,CRT	no		cas9,cas1,cas2,csn2,cas14j,cas3,DEDDh,DinG,csa3,WYL	Orphan	CACCCCCACACGTGTGGGGAATAC,CACCCCCACACGTGTGGGGAATACA	24,25	0	0	NA	NA	I-E,II-B:I-E,II-B	3,3	3	Orphan	cas9,cas1,cas2,csn2,cas14j,cas3,DEDDh,DinG,csa3,WYL	NA|104aa|up_9|NZ_LT854705.1_2198485_2198797_-,NA|84aa|up_7|NZ_LT854705.1_2200455_2200707_-,NA|73aa|up_6|NZ_LT854705.1_2200754_2200973_-,NA	NA|104aa|up_9|NZ_LT854705.1_2198485_2198797_-	NA	NA|339aa|up_8|NZ_LT854705.1_2198880_2199897_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|84aa|up_7|NZ_LT854705.1_2200455_2200707_-	NA	NA|73aa|up_6|NZ_LT854705.1_2200754_2200973_-	NA	NA|231aa|up_5|NZ_LT854705.1_2201235_2201928_-	PRK14116, gpmA, 2,3-diphosphoglycerate-dependent phosphoglycerate mutase	NA|521aa|up_4|NZ_LT854705.1_2202093_2203656_-	PHA03307, PHA03307, transcriptional regulator ICP4; Provisional	NA|369aa|up_3|NZ_LT854705.1_2203848_2204955_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|395aa|up_2|NZ_LT854705.1_2205197_2206382_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|309aa|up_1|NZ_LT854705.1_2206882_2207809_-	pfam06933, SSP160, Special lobe-specific silk protein SSP160	NA|398aa|up_0|NZ_LT854705.1_2208005_2209199_+	COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]	NA|115aa|down_0|NZ_LT854705.1_2209772_2210117_-	pfam05437, AzlD, Branched-chain amino acid transport protein (AzlD)	NA|268aa|down_1|NZ_LT854705.1_2210135_2210939_-	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]	NA|1104aa|down_2|NZ_LT854705.1_2211179_2214491_-	TIGR03062, hypothetical_protein_lp_1332, YhgE/Pip C-terminal domain	NA|436aa|down_3|NZ_LT854705.1_2214931_2216239_-	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]	NA|392aa|down_4|NZ_LT854705.1_2216310_2217486_-	COG5002, VicK, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|230aa|down_5|NZ_LT854705.1_2217496_2218186_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|189aa|down_6|NZ_LT854705.1_2218880_2219447_+	cd04268, ZnMc_MMP_like, Zinc-dependent metalloprotease, MMP_like subfamily	NA|380aa|down_7|NZ_LT854705.1_2219601_2220741_-	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|570aa|down_8|NZ_LT854705.1_2221002_2222712_-	COG5617, COG5617, Predicted integral membrane protein [Function unknown]	NA|551aa|down_9|NZ_LT854705.1_2222749_2224402_-	pfam13231, PMT_2, Dolichyl-phosphate-mannose-protein mannosyltransferase
GCF_900183405.1_ASM90018340v1	NZ_LT854705	Lactobacillus zymae strain ACA-DC 3411 chromosome I	9	2359273-2359361	9	CRISPRCasFinder	no	WYL	cas9,cas1,cas2,csn2,cas14j,cas3,DEDDh,DinG,csa3,WYL	Unclear	CAATGCAGATAAATGCAGATAAA	23	0	0	NA	NA	NA	1	1	Orphan	cas9,cas1,cas2,csn2,cas14j,cas3,DEDDh,DinG,csa3,WYL	NA|198aa|up_7|NZ_LT854705.1_2352047_2352641_+,NA|413aa|up_6|NZ_LT854705.1_2352777_2354016_-,NA|58aa|up_5|NZ_LT854705.1_2354203_2354377_+,NA|176aa|up_4|NZ_LT854705.1_2354373_2354901_-,NA|109aa|down_3|NZ_LT854705.1_2364430_2364757_-	NA|352aa|up_9|NZ_LT854705.1_2349495_2350551_-	cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD)	WYL|316aa|up_8|NZ_LT854705.1_2350702_2351650_-	pfam13280, WYL, WYL domain	NA|198aa|up_7|NZ_LT854705.1_2352047_2352641_+	NA	NA|413aa|up_6|NZ_LT854705.1_2352777_2354016_-	NA	NA|58aa|up_5|NZ_LT854705.1_2354203_2354377_+	NA	NA|176aa|up_4|NZ_LT854705.1_2354373_2354901_-	NA	NA|436aa|up_3|NZ_LT854705.1_2355080_2356388_+	PHA01790, PHA01790, streptodornase	NA|339aa|up_2|NZ_LT854705.1_2356732_2357749_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|81aa|up_1|NZ_LT854705.1_2357778_2358021_-	pfam04326, AlbA_2, Putative DNA-binding domain	NA|310aa|up_0|NZ_LT854705.1_2358048_2358978_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|370aa|down_0|NZ_LT854705.1_2359860_2360970_+	cd08170, GlyDH, Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation	NA|457aa|down_1|NZ_LT854705.1_2361311_2362682_-	pfam05525, Branch_AA_trans, Branched-chain amino acid transport protein	NA|442aa|down_2|NZ_LT854705.1_2363080_2364406_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|109aa|down_3|NZ_LT854705.1_2364430_2364757_-	NA	NA|152aa|down_4|NZ_LT854705.1_2364916_2365372_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|216aa|down_5|NZ_LT854705.1_2365405_2366053_+	COG0062, COG0062, Uncharacterized conserved protein [Function unknown]	NA|184aa|down_6|NZ_LT854705.1_2366160_2366712_+	cd14840, D-Ala-D-Ala_dipeptidase_Aad, D-Ala-D-Ala dipeptidase (includes Lactobacillus plantarum Aad peptidase)	NA|309aa|down_7|NZ_LT854705.1_2367200_2368127_+	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ	NA|492aa|down_8|NZ_LT854705.1_2368503_2369979_-	cd07088, ALDH_LactADH-AldA, Escherichia coli lactaldehyde dehydrogenase AldA-like	NA|374aa|down_9|NZ_LT854705.1_2370029_2371151_-	cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase
GCF_900183405.1_ASM90018340v1	NZ_LT854705	Lactobacillus zymae strain ACA-DC 3411 chromosome I	10	2420171-2420255	10	CRISPRCasFinder	no		cas9,cas1,cas2,csn2,cas14j,cas3,DEDDh,DinG,csa3,WYL	Orphan	CCAATCTTCTGGTGCCGAAACGTGT	25	0	0	NA	NA	NA	1	1	Orphan	cas9,cas1,cas2,csn2,cas14j,cas3,DEDDh,DinG,csa3,WYL	NA|269aa|up_6|NZ_LT854705.1_2412596_2413403_+,NA|83aa|up_2|NZ_LT854705.1_2417531_2417780_+,NA	NA|796aa|up_9|NZ_LT854705.1_2408122_2410510_-	PRK05261, PRK05261, phosphoketolase	NA|242aa|up_8|NZ_LT854705.1_2411185_2411911_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|168aa|up_7|NZ_LT854705.1_2412089_2412593_+	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins	NA|269aa|up_6|NZ_LT854705.1_2412596_2413403_+	NA	NA|254aa|up_5|NZ_LT854705.1_2413454_2414216_+	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]	NA|402aa|up_4|NZ_LT854705.1_2414321_2415527_+	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|278aa|up_3|NZ_LT854705.1_2415498_2416332_+	cd01572, QPRTase, Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes	NA|83aa|up_2|NZ_LT854705.1_2417531_2417780_+	NA	NA|252aa|up_1|NZ_LT854705.1_2417932_2418688_+	cd06259, YdcF-like, YdcF-like	NA|415aa|up_0|NZ_LT854705.1_2418736_2419981_-	COG4908, COG4908, Uncharacterized protein containing a NRPS condensation (elongation) domain [General function prediction only]	NA|339aa|down_0|NZ_LT854705.1_2420973_2421990_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|397aa|down_1|NZ_LT854705.1_2422709_2423900_-	cd17341, MFS_NRT2_like, Plant Nitrate transporter NRT2 family and Bacterial Nitrate/Nitrite transporters of the Major Facilitator Superfamily	NA|333aa|down_2|NZ_LT854705.1_2423904_2424903_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|82aa|down_3|NZ_LT854705.1_2424946_2425192_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|134aa|down_4|NZ_LT854705.1_2425194_2425596_-	cd00756, MoaE, MoaE family	NA|152aa|down_5|NZ_LT854705.1_2425993_2426449_+	PRK07308, PRK07308, flavodoxin; Validated	NA|334aa|down_6|NZ_LT854705.1_2426452_2427454_+	pfam01032, FecCD, FecCD transport family	NA|257aa|down_7|NZ_LT854705.1_2427450_2428221_+	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|357aa|down_8|NZ_LT854705.1_2428337_2429408_-	cd01142, TroA_e, Periplasmic binding protein TroA_e	NA|469aa|down_9|NZ_LT854705.1_2429424_2430831_-	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB
