assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900149915.1_EPEC-E2348_69-V2	NZ_LT827011	Escherichia coli O127:H6 isolate EPEC E2348/69 variety 2 chromosome 1	1	319477-319624	1	CRISPRCasFinder	no		DEDDh,cas14j,DinG,cas3,RT,csa3	Orphan	TCAGGCATTGGCCACCACAGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGA	55	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas14j,DinG,cas3,RT,csa3	NA,NA	NA|491aa|up_9|NZ_LT827011.1_306903_308376_-	PRK13252, PRK13252, betaine aldehyde dehydrogenase; Provisional	NA|196aa|up_8|NZ_LT827011.1_308389_308977_-	PRK00767, PRK00767, transcriptional regulator BetI; Validated	NA|678aa|up_7|NZ_LT827011.1_309105_311139_+	PRK09928, PRK09928, choline transport protein BetT; Provisional	NA|363aa|up_6|NZ_LT827011.1_312016_313105_+	smart00052, EAL, Putative diguanylate phosphodiesterase	NA|311aa|up_5|NZ_LT827011.1_313146_314079_-	PRK10094, PRK10094, HTH-type transcriptional activator AllS	NA|166aa|up_4|NZ_LT827011.1_314170_314668_-	pfam06496, DUF1097, Protein of unknown function (DUF1097)	NA|202aa|up_3|NZ_LT827011.1_314925_315531_+	sd00045, ANK, ankyrin repeats	NA|288aa|up_2|NZ_LT827011.1_315570_316434_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|516aa|up_1|NZ_LT827011.1_316423_317971_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|473aa|up_0|NZ_LT827011.1_317970_319389_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|317aa|down_0|NZ_LT827011.1_319718_320669_+	PRK12352, PRK12352, putative carbamate kinase; Reviewed	NA|461aa|down_1|NZ_LT827011.1_320678_322061_+	PRK06846, PRK06846, putative deaminase; Validated	NA|333aa|down_2|NZ_LT827011.1_322483_323482_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|225aa|down_3|NZ_LT827011.1_324363_325038_-	TIGR00949, Uncharacterized_membrane_protein_YahN, The Resistance to Homoserine/Threonine (RhtB) Family protein	NA|92aa|down_4|NZ_LT827011.1_325184_325460_+	PRK09929, PRK09929, hypothetical protein; Provisional	NA|529aa|down_5|NZ_LT827011.1_325560_327147_-	PRK15424, PRK15424, propionate catabolism operon regulatory protein PrpR; Provisional	NA|294aa|down_6|NZ_LT827011.1_327385_328267_+	PRK11320, prpB, 2-methylisocitrate lyase; Provisional	NA|390aa|down_7|NZ_LT827011.1_328435_329605_+	PRK12351, PRK12351, methylcitrate synthase; Provisional	NA|484aa|down_8|NZ_LT827011.1_329638_331090_+	PRK09425, prpD, bifunctional 2-methylcitrate dehydratase/aconitate hydratase	NA|604aa|down_9|NZ_LT827011.1_331129_332941_+	PRK10524, prpE, propionyl-CoA synthetase; Provisional
GCF_900149915.1_EPEC-E2348_69-V2	NZ_LT827011	Escherichia coli O127:H6 isolate EPEC E2348/69 variety 2 chromosome 1	2	2433638-2433751	2	CRISPRCasFinder	no		DEDDh,cas14j,DinG,cas3,RT,csa3	Orphan	TTTGTAGGCCGGATAAGCGAAGCGCATCCGGCA	33	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas14j,DinG,cas3,RT,csa3	NA,NA	NA|395aa|up_9|NZ_LT827011.1_2412538_2413723_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|259aa|up_8|NZ_LT827011.1_2413796_2414573_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_7|NZ_LT827011.1_2414577_2416227_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|1466aa|up_6|NZ_LT827011.1_2416227_2420625_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|208aa|up_5|NZ_LT827011.1_2420768_2421392_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|543aa|up_4|NZ_LT827011.1_2421388_2423017_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_3|NZ_LT827011.1_2423224_2425852_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_2|NZ_LT827011.1_2425998_2426721_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1253aa|up_1|NZ_LT827011.1_2426860_2430619_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|NZ_LT827011.1_2431300_2433586_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|NZ_LT827011.1_2433775_2434906_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|NZ_LT827011.1_2434905_2435160_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|NZ_LT827011.1_2435213_2435864_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|359aa|down_3|NZ_LT827011.1_2436066_2437143_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_4|NZ_LT827011.1_2437147_2438506_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_5|NZ_LT827011.1_2438780_2440409_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_6|NZ_LT827011.1_2440398_2441658_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_7|NZ_LT827011.1_2441654_2442845_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|316aa|down_8|NZ_LT827011.1_2443037_2443985_+	PRK09956, PRK09956, ISNCY family transposase	NA|74aa|down_9|NZ_LT827011.1_2443997_2444219_+	PRK09956, PRK09956, ISNCY family transposase
GCF_900149915.1_EPEC-E2348_69-V2	NZ_LT827011	Escherichia coli O127:H6 isolate EPEC E2348/69 variety 2 chromosome 1	3	2577242-2577357	3	CRISPRCasFinder	no		DEDDh,cas14j,DinG,cas3,RT,csa3	Orphan	CATCATGTGCGGTTGTTTGTGCGGCTTCATGTGCG	35	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas14j,DinG,cas3,RT,csa3	NA|90aa|up_6|NZ_LT827011.1_2573465_2573735_-,NA|91aa|down_0|NZ_LT827011.1_2577799_2578072_-,NA|146aa|down_4|NZ_LT827011.1_2579551_2579989_+,NA|128aa|down_6|NZ_LT827011.1_2580848_2581232_+,NA|157aa|down_7|NZ_LT827011.1_2581290_2581761_+,NA|99aa|down_8|NZ_LT827011.1_2581807_2582104_+,NA|63aa|down_9|NZ_LT827011.1_2582103_2582292_+	NA|63aa|up_9|NZ_LT827011.1_2572631_2572820_-	pfam06322, Phage_NinH, Phage NinH protein	NA|121aa|up_8|NZ_LT827011.1_2572816_2573179_-	PRK09786, PRK09786, endodeoxyribonuclease RUS; Reviewed	NA|97aa|up_7|NZ_LT827011.1_2573175_2573466_-	pfam07102, DUF1364, Protein of unknown function (DUF1364)	NA|90aa|up_6|NZ_LT827011.1_2573465_2573735_-	NA	NA|59aa|up_5|NZ_LT827011.1_2573727_2573904_-	pfam05810, NinF, NinF protein	NA|120aa|up_4|NZ_LT827011.1_2573903_2574263_-	PHA01519, PHA01519, hypothetical protein	NA|59aa|up_3|NZ_LT827011.1_2574265_2574442_-	pfam05322, NinE, NINE Protein	NA|176aa|up_2|NZ_LT827011.1_2574438_2574966_-	TIGR01712, DNA_N-6-adenine-methyltransferase_M	NA|147aa|up_1|NZ_LT827011.1_2574962_2575403_-	pfam05772, NinB, NinB protein	NA|459aa|up_0|NZ_LT827011.1_2575476_2576853_-	TIGR00665, DnaB, replicative DNA helicase	NA|91aa|down_0|NZ_LT827011.1_2577799_2578072_-	NA	NA|99aa|down_1|NZ_LT827011.1_2578094_2578391_-	pfam05269, Phage_CII, Bacteriophage CII protein	NA|67aa|down_2|NZ_LT827011.1_2578529_2578730_-	pfam09048, Cro, Cro	NA|238aa|down_3|NZ_LT827011.1_2578830_2579544_+	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	NA|146aa|down_4|NZ_LT827011.1_2579551_2579989_+	NA	NA|124aa|down_5|NZ_LT827011.1_2579975_2580347_+	pfam10779, XhlA, Haemolysin XhlA	NA|128aa|down_6|NZ_LT827011.1_2580848_2581232_+	NA	NA|157aa|down_7|NZ_LT827011.1_2581290_2581761_+	NA	NA|99aa|down_8|NZ_LT827011.1_2581807_2582104_+	NA	NA|63aa|down_9|NZ_LT827011.1_2582103_2582292_+	NA
GCF_900149915.1_EPEC-E2348_69-V2	NZ_LT827011	Escherichia coli O127:H6 isolate EPEC E2348/69 variety 2 chromosome 1	4	4228122-4228323	1	PILER-CR	no		DEDDh,cas14j,DinG,cas3,RT,csa3	Orphan	GTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAA	36	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas14j,DinG,cas3,RT,csa3	NA,NA	NA|252aa|up_9|NZ_LT827011.1_4219671_4220427_+	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA|202aa|up_8|NZ_LT827011.1_4220440_4221046_+	COG3165, COG3165, Uncharacterized protein conserved in bacteria [Function unknown]	NA|547aa|up_7|NZ_LT827011.1_4221042_4222683_+	PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB; Reviewed	NA|90aa|up_6|NZ_LT827011.1_4222761_4223031_+	PRK03554, tatA, Sec-independent protein translocase subunit TatA	NA|172aa|up_5|NZ_LT827011.1_4223034_4223550_+	PRK01770, PRK01770, Sec-independent protein translocase subunit TatB	NA|259aa|up_4|NZ_LT827011.1_4223552_4224329_+	PRK10921, PRK10921, Sec-independent protein translocase subunit TatC	NA|261aa|up_3|NZ_LT827011.1_4224370_4225153_+	PRK10425, PRK10425, 3'-5' ssDNA/RNA exonuclease TatD	NA|163aa|up_2|NZ_LT827011.1_4225149_4225638_-	PRK09014, rfaH, transcription/translation regulatory transformer protein RfaH	NA|498aa|up_1|NZ_LT827011.1_4225804_4227298_+	PRK10922, PRK10922, 4-hydroxy-3-polyprenylbenzoate decarboxylase	NA|234aa|up_0|NZ_LT827011.1_4227343_4228045_+	PRK08051, fre, FMN reductase; Validated	NA|388aa|down_0|NZ_LT827011.1_4228327_4229491_-	PRK08947, fadA, 3-ketoacyl-CoA thiolase; Reviewed	NA|730aa|down_1|NZ_LT827011.1_4229500_4231690_-	PRK11730, fadB, fatty acid oxidation complex subunit alpha FadB	NA|444aa|down_2|NZ_LT827011.1_4231879_4233211_+	PRK13607, PRK13607, proline dipeptidase; Provisional	NA|205aa|down_3|NZ_LT827011.1_4233210_4233825_+	PRK11568, PRK11568, IMPACT family protein	NA|484aa|down_4|NZ_LT827011.1_4233863_4235315_+	PRK10750, PRK10750, Trk system potassium transporter TrkH	NA|182aa|down_5|NZ_LT827011.1_4235326_4235872_+	PRK11104, hemG, menaquinone-dependent protoporphyrinogen IX dehydrogenase	NA|176aa|down_6|NZ_LT827011.1_4241460_4241988_-	PRK10751, PRK10751, molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional	NA|195aa|down_7|NZ_LT827011.1_4241969_4242554_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|90aa|down_8|NZ_LT827011.1_4242623_4242893_+	pfam06288, DUF1040, Protein of unknown function (DUF1040)	NA|329aa|down_9|NZ_LT827011.1_4242969_4243956_+	PRK11768, PRK11768, serine/threonine protein kinase
GCF_900149915.1_EPEC-E2348_69-V2	NZ_LT827011	Escherichia coli O127:H6 isolate EPEC E2348/69 variety 2 chromosome 1	5	4513830-4513953	4	CRISPRCasFinder	no		DEDDh,cas14j,DinG,cas3,RT,csa3	Orphan	GATGCGACGCTGTCGCGTCTTATCAGGCCTACA	33	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas14j,DinG,cas3,RT,csa3	NA,NA	NA|941aa|up_9|NZ_LT827011.1_4501071_4503894_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|179aa|up_8|NZ_LT827011.1_4504148_4504685_+	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional	NA|94aa|up_7|NZ_LT827011.1_4504783_4505065_-	pfam15940, YjcB, Family of unknown function	NA|518aa|up_6|NZ_LT827011.1_4505493_4507047_+	COG4943, COG4943, Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]	NA|108aa|up_5|NZ_LT827011.1_4507082_4507406_-	PRK10219, PRK10219, superoxide response transcriptional regulator SoxS	NA|155aa|up_4|NZ_LT827011.1_4507491_4507956_+	PRK15002, PRK15002, redox-sensitive transcriptional activator SoxR	NA|450aa|up_3|NZ_LT827011.1_4508502_4509852_+	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|550aa|up_2|NZ_LT827011.1_4510002_4511652_+	TIGR00831, Putative_Na+/H+_exchanger_Rv2287/MT2345/Mb2309	NA|550aa|up_1|NZ_LT827011.1_4511734_4513384_-	PRK09395, actP, cation/acetate symporter ActP	NA|105aa|up_0|NZ_LT827011.1_4513380_4513695_-	COG3162, COG3162, Predicted membrane protein [Function unknown]	NA|653aa|down_0|NZ_LT827011.1_4513986_4515945_-	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|479aa|down_1|NZ_LT827011.1_4516336_4517773_+	PRK11125, nrfA, ammonia-forming cytochrome c nitrite reductase	NA|189aa|down_2|NZ_LT827011.1_4517817_4518384_+	PRK11659, PRK11659, cytochrome c nitrite reductase pentaheme subunit; Provisional	NA|224aa|down_3|NZ_LT827011.1_4518380_4519052_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|319aa|down_4|NZ_LT827011.1_4519048_4520005_+	TIGR03148, cyt_nit_nrfD, cytochrome c nitrite reductase, NrfD subunit	NA|573aa|down_5|NZ_LT827011.1_4520024_4521743_+	PRK10369, PRK10369, heme lyase subunit NrfE; Provisional	NA|128aa|down_6|NZ_LT827011.1_4521735_4522119_+	PRK10144, PRK10144, formate-dependent nitrite reductase complex subunit NrfF; Provisional	NA|199aa|down_7|NZ_LT827011.1_4522115_4522712_+	PRK10370, PRK10370, formate-dependent nitrite reductase complex subunit NrfG; Provisional	NA|438aa|down_8|NZ_LT827011.1_4523054_4524368_+	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional	NA|230aa|down_9|NZ_LT827011.1_4524445_4525135_-	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]
