assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900149875.1_EPEC1	NZ_LT903847	Escherichia coli O127:H6 isolate EPEC1 chromosome 1	1	334669-334792	1	CRISPRCasFinder	no		DEDDh,cas3,RT,csa3,DinG,cas14j	Orphan	TGTAGGCCTGATAAGACGCGACAGCGGCGCATC	33	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,RT,csa3,DinG,cas14j	NA,NA	NA|230aa|up_9|NZ_LT903847.1_323486_324176_+	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|438aa|up_8|NZ_LT903847.1_324253_325567_-	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional	NA|199aa|up_7|NZ_LT903847.1_325909_326506_-	PRK10370, PRK10370, formate-dependent nitrite reductase complex subunit NrfG; Provisional	NA|128aa|up_6|NZ_LT903847.1_326502_326886_-	PRK10144, PRK10144, formate-dependent nitrite reductase complex subunit NrfF; Provisional	NA|573aa|up_5|NZ_LT903847.1_326878_328597_-	PRK10369, PRK10369, heme lyase subunit NrfE; Provisional	NA|319aa|up_4|NZ_LT903847.1_328616_329573_-	TIGR03148, cyt_nit_nrfD, cytochrome c nitrite reductase, NrfD subunit	NA|224aa|up_3|NZ_LT903847.1_329569_330241_-	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|189aa|up_2|NZ_LT903847.1_330237_330804_-	PRK11659, PRK11659, cytochrome c nitrite reductase pentaheme subunit; Provisional	NA|479aa|up_1|NZ_LT903847.1_330848_332285_-	PRK11125, nrfA, ammonia-forming cytochrome c nitrite reductase	NA|653aa|up_0|NZ_LT903847.1_332676_334635_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|105aa|down_0|NZ_LT903847.1_334926_335241_+	COG3162, COG3162, Predicted membrane protein [Function unknown]	NA|550aa|down_1|NZ_LT903847.1_335237_336887_+	PRK09395, actP, cation/acetate symporter ActP	NA|550aa|down_2|NZ_LT903847.1_336969_338619_-	TIGR00831, Putative_Na+/H+_exchanger_Rv2287/MT2345/Mb2309	NA|450aa|down_3|NZ_LT903847.1_338769_340119_-	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|155aa|down_4|NZ_LT903847.1_340665_341130_-	PRK15002, PRK15002, redox-sensitive transcriptional activator SoxR	NA|108aa|down_5|NZ_LT903847.1_341215_341539_+	PRK10219, PRK10219, superoxide response transcriptional regulator SoxS	NA|518aa|down_6|NZ_LT903847.1_341574_343128_-	COG4943, COG4943, Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]	NA|94aa|down_7|NZ_LT903847.1_343556_343838_+	pfam15940, YjcB, Family of unknown function	NA|179aa|down_8|NZ_LT903847.1_343936_344473_-	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional	NA|941aa|down_9|NZ_LT903847.1_344727_347550_+	PRK00349, uvrA, excinuclease ABC subunit UvrA
GCF_900149875.1_EPEC1	NZ_LT903847	Escherichia coli O127:H6 isolate EPEC1 chromosome 1	2	2387649-2387762	2	CRISPRCasFinder	no		DEDDh,cas3,RT,csa3,DinG,cas14j	Orphan	TGCCGGATGCGCTTCGCTTATCCGGCCTACAAA	33	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,RT,csa3,DinG,cas14j	NA,NA	NA|74aa|up_9|NZ_LT903847.1_2377180_2377402_-	PRK09956, PRK09956, ISNCY family transposase	NA|316aa|up_8|NZ_LT903847.1_2377414_2378362_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_LT903847.1_2378554_2379745_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_LT903847.1_2379741_2381001_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_LT903847.1_2380990_2382619_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_LT903847.1_2382893_2384252_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_LT903847.1_2384256_2385333_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_LT903847.1_2385535_2386186_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_LT903847.1_2386239_2386494_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_LT903847.1_2386493_2387624_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_LT903847.1_2387813_2390099_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1253aa|down_1|NZ_LT903847.1_2390780_2394539_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_LT903847.1_2394678_2395401_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_LT903847.1_2395547_2398175_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|543aa|down_4|NZ_LT903847.1_2398382_2400011_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_LT903847.1_2400007_2400631_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1466aa|down_6|NZ_LT903847.1_2400774_2405172_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_LT903847.1_2405172_2406822_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_LT903847.1_2406826_2407603_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_LT903847.1_2407676_2408861_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_900149875.1_EPEC1	NZ_LT903847	Escherichia coli O127:H6 isolate EPEC1 chromosome 1	3	3044202-3044325	3	CRISPRCasFinder	no	DEDDh	DEDDh,cas3,RT,csa3,DinG,cas14j	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,RT,csa3,DinG,cas14j	NA,NA|30aa|down_7|NZ_LT903847.1_3053215_3053305_+	NA|471aa|up_9|NZ_LT903847.1_3033651_3035064_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_LT903847.1_3035620_3035830_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_LT903847.1_3036285_3036912_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_LT903847.1_3036932_3039035_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_LT903847.1_3039047_3039686_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_LT903847.1_3039749_3040418_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_LT903847.1_3040414_3041200_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_LT903847.1_3041203_3042016_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_LT903847.1_3042027_3043632_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_LT903847.1_3043757_3044063_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_LT903847.1_3044639_3045896_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_LT903847.1_3045936_3047310_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_LT903847.1_3047524_3048166_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_LT903847.1_3048205_3049354_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_LT903847.1_3049638_3050850_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_LT903847.1_3050962_3051895_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_LT903847.1_3051891_3052917_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_LT903847.1_3053215_3053305_+	NA	NA|390aa|down_8|NZ_LT903847.1_3053470_3054640_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_LT903847.1_3054785_3055367_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_900149875.1_EPEC1	NZ_LT903847	Escherichia coli O127:H6 isolate EPEC1 chromosome 1	4	3699533-3699624	4	CRISPRCasFinder	no		DEDDh,cas3,RT,csa3,DinG,cas14j	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,RT,csa3,DinG,cas14j	NA|70aa|up_9|NZ_LT903847.1_3688783_3688993_-,NA	NA|70aa|up_9|NZ_LT903847.1_3688783_3688993_-	NA	NA|1321aa|up_8|NZ_LT903847.1_3689047_3693010_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_LT903847.1_3693049_3693688_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_LT903847.1_3693975_3695067_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_LT903847.1_3695066_3695759_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_LT903847.1_3695770_3696157_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_LT903847.1_3696164_3696965_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_LT903847.1_3696974_3697565_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_LT903847.1_3697575_3698070_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_LT903847.1_3698090_3699419_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_LT903847.1_3700047_3700644_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_LT903847.1_3700664_3700892_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|458aa|down_2|NZ_LT903847.1_3700926_3702300_-	pfam02281, Dimer_Tnp_Tn5, Transposase Tn5 dimerization domain	NA|414aa|down_3|NZ_LT903847.1_3702488_3703730_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|307aa|down_4|NZ_LT903847.1_3704264_3705185_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_LT903847.1_3705184_3705490_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_LT903847.1_3705845_3706445_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_LT903847.1_3706441_3708988_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_LT903847.1_3708987_3710160_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_LT903847.1_3710289_3710982_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_900149875.1_EPEC1	NZ_LT903847	Escherichia coli O127:H6 isolate EPEC1 chromosome 1	5	4472867-4473014	5	CRISPRCasFinder	no		DEDDh,cas3,RT,csa3,DinG,cas14j	Orphan	TCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCTGTGGTGACCAATGCCTGA	55	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,RT,csa3,DinG,cas14j	NA,NA	NA|604aa|up_9|NZ_LT903847.1_4459549_4461361_-	PRK10524, prpE, propionyl-CoA synthetase; Provisional	NA|484aa|up_8|NZ_LT903847.1_4461400_4462852_-	PRK09425, prpD, bifunctional 2-methylcitrate dehydratase/aconitate hydratase	NA|390aa|up_7|NZ_LT903847.1_4462885_4464055_-	PRK12351, PRK12351, methylcitrate synthase; Provisional	NA|294aa|up_6|NZ_LT903847.1_4464223_4465105_-	PRK11320, prpB, 2-methylisocitrate lyase; Provisional	NA|529aa|up_5|NZ_LT903847.1_4465343_4466930_+	PRK15424, PRK15424, propionate catabolism operon regulatory protein PrpR; Provisional	NA|92aa|up_4|NZ_LT903847.1_4467030_4467306_-	PRK09929, PRK09929, hypothetical protein; Provisional	NA|225aa|up_3|NZ_LT903847.1_4467452_4468127_+	TIGR00949, Uncharacterized_membrane_protein_YahN, The Resistance to Homoserine/Threonine (RhtB) Family protein	NA|333aa|up_2|NZ_LT903847.1_4469008_4470007_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|461aa|up_1|NZ_LT903847.1_4470429_4471812_-	PRK06846, PRK06846, putative deaminase; Validated	NA|317aa|up_0|NZ_LT903847.1_4471821_4472772_-	PRK12352, PRK12352, putative carbamate kinase; Reviewed	NA|473aa|down_0|NZ_LT903847.1_4473101_4474520_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|516aa|down_1|NZ_LT903847.1_4474519_4476067_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|288aa|down_2|NZ_LT903847.1_4476056_4476920_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|202aa|down_3|NZ_LT903847.1_4476959_4477565_-	sd00045, ANK, ankyrin repeats	NA|166aa|down_4|NZ_LT903847.1_4477822_4478320_+	pfam06496, DUF1097, Protein of unknown function (DUF1097)	NA|311aa|down_5|NZ_LT903847.1_4478411_4479344_+	PRK10094, PRK10094, HTH-type transcriptional activator AllS	NA|363aa|down_6|NZ_LT903847.1_4479385_4480474_-	smart00052, EAL, Putative diguanylate phosphodiesterase	NA|678aa|down_7|NZ_LT903847.1_4481351_4483385_-	PRK09928, PRK09928, choline transport protein BetT; Provisional	NA|196aa|down_8|NZ_LT903847.1_4483513_4484101_+	PRK00767, PRK00767, transcriptional regulator BetI; Validated	NA|491aa|down_9|NZ_LT903847.1_4484114_4485587_+	PRK13252, PRK13252, betaine aldehyde dehydrogenase; Provisional
