The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT615218	Staphylococcus aureus strain AUS0325 chromosome 1	2771577	706543	714363	2771577		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|706543_707599_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|707598_708285_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|708259_708733_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093556.1|709074_709515_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637687.1|709794_710379_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|710477_711191_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|711194_711614_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|711615_712284_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604515.1|712634_713228_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	43.5	1.2e-38
WP_001217794.1|713211_714363_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	3.5e-23
>prophage 2
NZ_LT615218	Staphylococcus aureus strain AUS0325 chromosome 1	2771577	726336	740735	2771577		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663014.1|726336_727395_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	1.8e-21
WP_000197262.1|727689_728232_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429006.1|728912_729830_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
WP_031835073.1|729920_730022_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|730099_731605_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_064127081.1|731945_732446_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	2.7e-52
WP_064127082.1|732465_733332_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|734132_734531_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|734493_736599_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|736716_737688_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|737868_738024_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|738062_739034_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|739020_739977_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616840.1|739973_740735_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
>prophage 3
NZ_LT615218	Staphylococcus aureus strain AUS0325 chromosome 1	2771577	788069	845559	2771577	transposase,head,holin,plate,portal,integrase,capsid,terminase,tail	Staphylococcus_phage(71.83%)	78	807763:807779	843880:843896
WP_069991873.1|788069_789374_+	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	80.7	1.1e-195
WP_000785252.1|789712_790171_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000556760.1|790237_790471_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_001165957.1|790586_791327_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_031865113.1|791360_793733_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	39.2	4.6e-94
WP_001085185.1|793754_794219_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	100.0	1.5e-81
WP_000146089.1|794730_795780_-|integrase	site-specific integrase	integrase	W5R968	Staphylococcus_phage	99.4	1.4e-196
WP_031897702.1|795841_796345_-	hypothetical protein	NA	A9CR44	Staphylococcus_phage	100.0	7.5e-47
WP_000874710.1|796399_797038_-	LexA family transcriptional regulator	NA	A0A0E3TAG1	Staphylococcus_phage	100.0	8.8e-117
WP_001106627.1|797227_797482_+	helix-turn-helix transcriptional regulator	NA	B7T095	Staphylococcus_virus	96.4	7.7e-40
WP_001157027.1|797625_798345_+	phage repressor protein	NA	A0A059T7N7	Staphylococcus_phage	87.9	2.3e-113
WP_000455727.1|798357_798567_+	hypothetical protein	NA	A0A2H4PQR1	Staphylococcus_phage	98.6	2.2e-32
WP_001285964.1|798579_798741_+	DUF1270 domain-containing protein	NA	A9CR58	Staphylococcus_phage	98.1	1.1e-20
WP_061838581.1|798830_799091_+	DUF1108 family protein	NA	Q4ZDY8	Staphylococcus_virus	86.0	3.3e-38
WP_001205732.1|799099_799363_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000138475.1|801315_802236_+	recombinase RecT	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_072507301.1|802316_802934_+	MBL fold metallo-hydrolase	NA	A0A2I6PDI9	Staphylococcus_phage	98.8	1.0e-85
WP_069991876.1|802934_803405_+	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	96.2	8.2e-80
WP_000148298.1|803434_804319_+	DnaD domain protein	NA	S4V6D4	Staphylococcus_phage	96.9	1.1e-138
WP_000338528.1|804325_804544_+	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
WP_000401972.1|804552_804957_+	RusA family crossover junction endodeoxyribonuclease	NA	O80087	Staphylococcus_phage	95.5	8.7e-70
WP_069991878.1|804969_805341_+	hypothetical protein	NA	C5I648	Staphylococcus_phage	94.3	6.8e-53
WP_000022728.1|805340_805598_+	DUF3310 domain-containing protein	NA	A0A2I6PEN5	Staphylococcus_phage	100.0	2.6e-43
WP_000235324.1|805600_805801_+	hypothetical protein	NA	A0A2I6PEM3	Staphylococcus_phage	100.0	2.5e-30
WP_069991881.1|805815_806058_+	hypothetical protein	NA	A0A2I6PE14	Staphylococcus_phage	97.5	3.6e-39
WP_000694061.1|806070_806496_+	hypothetical protein	NA	B7T0H5	Staphylococcus_virus	80.3	1.5e-56
WP_000983952.1|806492_806687_+	hypothetical protein	NA	B7T0H6	Staphylococcus_virus	92.2	2.4e-25
WP_000982713.1|806683_807121_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001105603.1|807117_807402_+	hypothetical protein	NA	A0A2I6PDI3	Staphylococcus_phage	95.7	2.8e-43
WP_001065076.1|807394_807646_+	DUF1024 family protein	NA	A0A1W6JPK6	Staphylococcus_phage	98.8	4.6e-37
WP_000028423.1|807635_807809_+	hypothetical protein	NA	A0A2H4PQJ2	Staphylococcus_phage	98.2	2.3e-24
807763:807779	attL	TAGATTTTATTACTAAA	NA	NA	NA	NA
WP_000889680.1|807809_807971_+	hypothetical protein	NA	W5R9K6	Staphylococcus_phage	98.1	5.4e-23
WP_001061837.1|807985_808513_+	dUTP diphosphatase	NA	I1W653	Staphylococcus_phage	97.7	3.3e-93
WP_001282074.1|808549_808795_+	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_000195832.1|808791_808998_+	DUF1381 domain-containing protein	NA	A7TWH8	Staphylococcus_phage	97.1	4.9e-29
WP_000141259.1|808994_809198_+	hypothetical protein	NA	A7TWH9	Staphylococcus_phage	100.0	8.8e-31
WP_000608283.1|809190_809427_+	hypothetical protein	NA	A7TWI0	Staphylococcus_phage	100.0	3.6e-36
WP_001568228.1|809416_809806_+	hypothetical protein	NA	M9QX07	Staphylococcus_phage	100.0	2.8e-65
WP_000595258.1|809802_809976_+	transcriptional activator RinB	NA	A1KX88	Staphylococcus_virus	100.0	3.7e-22
WP_000286968.1|809976_810378_+	hypothetical protein	NA	A0A2H4PQK5	Staphylococcus_phage	100.0	5.6e-69
WP_000594088.1|810732_811227_+|terminase	terminase small subunit	terminase	A0A0N9BAX3	Staphylococcus_phage	100.0	3.4e-84
WP_001037578.1|811219_812443_+|terminase	PBSX family phage terminase large subunit	terminase	A0A0N9BAX9	Staphylococcus_phage	100.0	7.5e-242
WP_000177426.1|812439_813864_+|portal	phage portal protein	portal	A0A0E3T9I6	Staphylococcus_phage	100.0	4.8e-272
WP_029549386.1|813832_814783_+|head	phage head morphogenesis protein	head	A0A0H3U2Z4	Staphylococcus_phage	99.7	5.6e-176
WP_001019221.1|814878_815463_+	DUF4355 domain-containing protein	NA	A0A2H4JDY6	uncultured_Caudovirales_phage	100.0	7.3e-78
WP_000235168.1|815479_816394_+|capsid	phage major capsid protein	capsid	A0A0H3U2U7	Staphylococcus_phage	100.0	1.2e-170
WP_000002931.1|816405_816549_+	hypothetical protein	NA	A0A0E3XC49	Staphylococcus_phage	100.0	4.6e-18
WP_000177351.1|816554_816905_+|head,tail	phage head-tail adapter protein	head,tail	A0A0H3U2R5	Staphylococcus_phage	100.0	1.9e-60
WP_000483041.1|816916_817252_+|head	phage head closure protein	head	A0A0E3TAH8	Staphylococcus_phage	100.0	8.8e-60
WP_001151326.1|817238_817652_+	HK97 gp10 family phage protein	NA	A0A0N9BAY5	Staphylococcus_phage	99.3	4.1e-75
WP_000270192.1|817664_818090_+	DUF3168 domain-containing protein	NA	Q4ZBQ9	Staphylococcus_phage	100.0	5.5e-75
WP_000057582.1|818090_818648_+|tail	tail protein	tail	Q4ZBQ8	Staphylococcus_phage	100.0	8.2e-103
WP_000134337.1|818713_819220_+	hypothetical protein	NA	Q4ZBQ7	Staphylococcus_phage	100.0	2.7e-92
WP_000880587.1|819264_819549_+	hypothetical protein	NA	A0A0N7E0V9	Staphylococcus_phage	100.0	8.8e-45
WP_000379448.1|819552_822438_+	hypothetical protein	NA	A0A2H4JGV1	uncultured_Caudovirales_phage	99.7	0.0e+00
WP_000560188.1|822452_823394_+|tail	phage tail family protein	tail	A0A2H4JFG3	uncultured_Caudovirales_phage	100.0	6.7e-182
WP_001121996.1|823404_825291_+|tail	phage tail protein	tail	A1KXA8	Staphylococcus_virus	99.8	0.0e+00
WP_000323256.1|825303_827202_+	hypothetical protein	NA	A0A0H3U448	Staphylococcus_phage	98.4	0.0e+00
WP_032099400.1|827201_829025_+|plate	BppU family phage baseplate upper protein	plate	Q9FZY8	Staphylococcus_virus	99.8	1.0e-295
WP_000705907.1|829024_829402_+	DUF2977 domain-containing protein	NA	Q4ZDT8	Staphylococcus_virus	99.2	8.1e-54
WP_001790193.1|829405_829579_+	XkdX family protein	NA	Q8LTH6	Staphylococcus_phage	100.0	1.7e-27
WP_000466769.1|829619_829919_+	DUF2951 domain-containing protein	NA	Q4ZBP8	Staphylococcus_phage	100.0	1.3e-46
WP_000524038.1|830055_831930_+	glucosaminidase domain-containing protein	NA	A0A2H4JB48	uncultured_Caudovirales_phage	99.4	0.0e+00
WP_061839003.1|831942_833181_+|plate	BppU family phage baseplate upper protein	plate	E0Y3M8	Staphylococcus_virus	99.0	2.5e-208
WP_000398878.1|833185_833581_+	hypothetical protein	NA	Q4ZBP5	Staphylococcus_phage	100.0	2.7e-68
WP_000339141.1|833636_833939_+|holin	phage holin	holin	A0A2I6PF56	Staphylococcus_phage	100.0	3.1e-48
WP_000909212.1|833949_835404_+	N-acetylmuramoyl-L-alanine amidase	NA	I1W626	Staphylococcus_phage	99.8	3.4e-289
WP_000125169.1|835934_836141_+	hypothetical protein	NA	Q4ZBW5	Staphylococcus_virus	100.0	4.5e-30
WP_000497652.1|836155_836356_+	hypothetical protein	NA	Q4ZBW4	Staphylococcus_virus	97.0	8.7e-31
WP_023913537.1|839097_840288_+	Abi family protein	NA	NA	NA	NA	NA
WP_072398062.1|840994_841147_+	helix-turn-helix domain-containing protein	NA	A0A2H4PQU1	Staphylococcus_phage	87.5	3.6e-05
WP_001814548.1|841074_841230_+|transposase	IS3 family transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	67.3	6.1e-08
WP_031865111.1|841271_841514_+	hypothetical protein	NA	A0A2H4PQV6	Staphylococcus_phage	86.8	3.3e-24
WP_029727366.1|841593_842055_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	A0A2I7SC85	Paenibacillus_phage	55.8	1.2e-43
WP_000158489.1|842282_842930_+	DUF4065 domain-containing protein	NA	NA	NA	NA	NA
WP_000598564.1|842922_843330_+	hypothetical protein	NA	NA	NA	NA	NA
WP_072398063.1|844515_844929_+	DUF3102 domain-containing protein	NA	A0A2H4JAH5	uncultured_Caudovirales_phage	67.9	1.1e-32
843880:843896	attR	TAGATTTTATTACTAAA	NA	NA	NA	NA
WP_000813311.1|845046_845559_+	hypothetical protein	NA	Q4ZE83	Staphylococcus_phage	100.0	1.4e-69
>prophage 4
NZ_LT615218	Staphylococcus aureus strain AUS0325 chromosome 1	2771577	1033482	1041955	2771577		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|1033482_1033965_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010412.1|1033951_1035076_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|1035079_1035784_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|1035783_1036047_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|1036048_1036720_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032746.1|1036712_1038902_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	4.6e-141
WP_000483713.1|1038880_1040365_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000030817.1|1040357_1041386_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	3.8e-61
WP_000238660.1|1041388_1041955_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.7	7.2e-30
>prophage 5
NZ_LT615218	Staphylococcus aureus strain AUS0325 chromosome 1	2771577	1299296	1305674	2771577		Staphylococcus_phage(83.33%)	7	NA	NA
WP_001814546.1|1299296_1299494_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	50.0	1.7e-10
WP_077156057.1|1300181_1300406_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	71.0	2.5e-18
WP_001002340.1|1300695_1300902_+	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	59.7	1.3e-13
WP_000006110.1|1302138_1302324_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
WP_001215405.1|1304307_1304481_-	hypothetical protein	NA	A0A059NT83	Lactococcus_phage	51.9	4.7e-09
WP_000585093.1|1304892_1305144_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000572946.1|1305320_1305674_+	hypothetical protein	NA	A0A1J0MF61	Staphylococcus_phage	44.4	6.5e-21
>prophage 6
NZ_LT615218	Staphylococcus aureus strain AUS0325 chromosome 1	2771577	1582964	1591276	2771577	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1582964_1583750_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|1583875_1584766_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062174.1|1584775_1586122_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.4	9.1e-55
WP_000683928.1|1586235_1587336_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	4.0e-08
WP_000624572.1|1587338_1588016_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1588146_1589253_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217261.1|1589476_1591276_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
>prophage 7
NZ_LT615218	Staphylococcus aureus strain AUS0325 chromosome 1	2771577	1660996	1670039	2771577	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1660996_1661515_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000594985.1|1661536_1663810_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.1	1.1e-63
WP_069991986.1|1664012_1666292_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.4e-31
WP_001160682.1|1666566_1666827_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112042.1|1666845_1667985_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	4.2e-85
WP_001019178.1|1668007_1669033_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1669034_1670039_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 8
NZ_LT615218	Staphylococcus aureus strain AUS0325 chromosome 1	2771577	1793799	1859027	2771577	protease,tRNA	Staphylococcus_phage(95.45%)	58	NA	NA
WP_031865067.1|1793799_1800360_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	96.8	1.7e-300
WP_000836465.1|1800685_1800997_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_001557386.1|1801018_1803436_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
WP_001025061.1|1803723_1804905_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_000526539.1|1805014_1805968_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1805964_1806528_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1806647_1807049_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_069992005.1|1808627_1809455_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1809457_1809577_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196356.1|1809688_1810690_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	2.6e-184
WP_001008549.1|1810811_1811276_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	100.0	4.5e-70
WP_001159035.1|1811288_1812470_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	100.0	1.7e-227
WP_000493888.1|1812480_1813113_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	100.0	3.4e-113
WP_000077352.1|1813119_1814163_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	2.0e-195
WP_001261687.1|1814644_1816147_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000989117.1|1816982_1818275_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	100.0	5.0e-228
WP_001032833.1|1818361_1819216_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1819491_1819716_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671053.1|1819914_1820385_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	98.7	2.3e-82
WP_064127177.1|1820497_1820941_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030469.1|1820927_1821371_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001168911.1|1821666_1822302_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1822740_1823454_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|1823713_1824016_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200543.1|1824271_1824637_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	99.2	2.4e-58
WP_000623478.1|1824633_1824987_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	100.0	2.6e-22
WP_000453313.1|1827210_1828044_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.6	3.5e-158
WP_000366163.1|1828255_1829164_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000933822.1|1829288_1830482_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109898.1|1830853_1832446_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
WP_072398270.1|1832823_1833570_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	2.4e-142
WP_000672007.1|1833574_1834048_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	2.1e-83
WP_000718107.1|1834113_1834371_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778520.1|1834367_1835369_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	98.2	1.3e-186
WP_000348351.1|1835373_1836852_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	5.3e-282
WP_072398272.1|1837010_1837466_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	3.0e-79
WP_072398259.1|1837768_1838419_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	98.6	5.2e-56
WP_000070636.1|1838499_1839495_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	82.7	5.3e-68
WP_000627533.1|1840236_1840578_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	6.6e-55
WP_000414207.1|1840678_1841251_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.8	3.2e-25
WP_000494957.1|1841448_1842078_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	98.1	1.2e-78
WP_000809857.1|1842191_1842377_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000375475.1|1842378_1842555_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000731412.1|1843661_1844105_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000439996.1|1844104_1844548_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_031865258.1|1844590_1846201_+	lipase	NA	NA	NA	NA	NA
WP_000095392.1|1846215_1846515_+	WXG100 family type VII secretion target	NA	NA	NA	NA	NA
WP_069992008.1|1848626_1849865_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	36.0	1.9e-43
WP_000028605.1|1849857_1851414_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.4	3.0e-288
WP_031865257.1|1851578_1851713_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038688.1|1851777_1852497_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
WP_001038680.1|1852647_1853367_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	97.5	1.6e-127
WP_064127181.1|1853534_1854251_-|protease	serine protease	protease	A0A2H4PQN5	Staphylococcus_phage	65.5	1.8e-86
WP_001039438.1|1854372_1855092_-|protease	serine protease	protease	A0A2H4PQP7	Staphylococcus_phage	86.6	1.6e-114
WP_001038877.1|1855149_1855872_-|protease	serine protease	protease	A0A2H4PQN0	Staphylococcus_phage	85.0	2.7e-114
WP_001039447.1|1855929_1856652_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
WP_001039429.1|1856776_1857484_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	96.6	1.5e-125
WP_001092752.1|1858445_1859027_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	61.1	1.2e-51
>prophage 9
NZ_LT615218	Staphylococcus aureus strain AUS0325 chromosome 1	2771577	1946014	2042518	2771577	head,holin,tRNA,portal,capsid,integrase,protease,terminase,tail	Staphylococcus_phage(87.34%)	114	1942451:1942475	2044624:2044648
1942451:1942475	attL	ACCCCAACTTGCATTGTCTGTAGAA	NA	NA	NA	NA
WP_000170162.1|1946014_1946317_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_000957020.1|1946683_1948222_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_000831700.1|1948310_1949510_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_000774565.1|1949522_1951526_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.1	5.8e-114
WP_000992921.1|1951529_1953722_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272071.1|1953718_1954411_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|1954582_1954885_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|1954993_1956289_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_000827764.1|1957149_1958316_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434933.1|1958346_1958673_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669864.1|1958964_1959138_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|1959118_1959721_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040866.1|1959991_1960813_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
WP_000284424.1|1960805_1962275_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	44.9	1.0e-107
WP_000897643.1|1962458_1963535_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177827.1|1963554_1964349_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|1964420_1964528_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323154.1|1964538_1966101_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275705.1|1966305_1967403_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	3.3e-47
WP_000149686.1|1967774_1968335_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|1968387_1969317_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_072398251.1|1969509_1969683_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021226.1|1969734_1971114_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181322.1|1971233_1972262_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|1972531_1972933_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|1973564_1973738_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064127167.1|1974188_1975229_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713072.1|1975285_1976128_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|1976124_1976682_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|1976741_1977266_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|1977386_1977950_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221651.1|1978015_1978756_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763051.1|1978755_1979628_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	2.1e-28
WP_000645724.1|1979624_1980305_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991304.1|1980305_1981202_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000691587.1|1981198_1981579_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|1981837_1982014_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|1982256_1982355_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068523.1|1982554_1983841_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_054189050.1|1984465_1986214_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000669791.1|1987172_1987352_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	98.3	1.4e-24
WP_001791826.1|1987662_1987923_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_031906254.1|1987975_1988326_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	99.1	4.9e-53
WP_000920038.1|1989822_1990314_-	staphylokinase	NA	A0A1W6JQ12	Staphylococcus_phage	99.4	4.7e-86
WP_000861038.1|1990504_1991260_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|1991271_1991526_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_001791821.1|1991577_1991685_+	hypothetical protein	NA	NA	NA	NA	NA
WP_072353918.1|1991737_1991914_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	94.8	5.5e-21
WP_000340977.1|1992056_1992431_-	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_001262620.1|1992486_1992774_-	hypothetical protein	NA	C5I682	Staphylococcus_phage	100.0	9.9e-44
WP_001000058.1|1992819_1992972_-	hypothetical protein	NA	A0A1W6JPL6	Staphylococcus_phage	100.0	7.6e-19
WP_000582132.1|1992964_1996747_-	hypothetical protein	NA	A0A1V0E5H3	Staphylococcus_phage	99.9	0.0e+00
WP_001154317.1|1996762_1998253_-|tail	phage tail family protein	tail	R9QST9	Staphylococcus_phage	100.0	3.1e-298
WP_031906215.1|1998252_2002902_-|tail	phage tail tape measure protein	tail	A0A1V0E5H1	Staphylococcus_phage	96.4	0.0e+00
WP_000571956.1|2002957_2003080_-	hypothetical protein	NA	D2JLF6	Staphylococcus_phage	97.5	2.6e-14
WP_000442601.1|2003139_2003586_-	hypothetical protein	NA	D2JLF5	Staphylococcus_phage	100.0	5.4e-73
WP_000570652.1|2003650_2004604_-	Ig-like domain-containing protein	NA	A7TWD0	Staphylococcus_phage	100.0	6.2e-175
WP_000611449.1|2004604_2004985_-	hypothetical protein	NA	D2JLF3	Staphylococcus_phage	99.2	1.3e-67
WP_000501244.1|2004981_2005359_-	HK97 gp10 family phage protein	NA	D2JLF2	Staphylococcus_phage	100.0	1.1e-61
WP_000975314.1|2005358_2005694_-|head,tail	head-tail adaptor protein	head,tail	A7TWC7	Staphylococcus_phage	100.0	1.1e-59
WP_031906214.1|2005680_2006013_-|head,tail	phage head-tail connector protein	head,tail	D2JLF0	Staphylococcus_phage	98.2	3.1e-57
WP_001252099.1|2006021_2006180_-	hypothetical protein	NA	D2JLE9	Staphylococcus_phage	100.0	3.2e-20
WP_000849957.1|2006215_2007463_-|capsid	phage major capsid protein	capsid	Q8SDK8	Staphylococcus_phage	97.6	5.9e-210
WP_000032523.1|2007550_2008135_-|head,protease	HK97 family phage prohead protease	head,protease	D2JLE7	Staphylococcus_phage	99.5	2.9e-106
WP_000511064.1|2008127_2009378_-|portal	phage portal protein	portal	D2JLE6	Staphylococcus_phage	99.5	6.3e-236
WP_000365301.1|2009383_2009584_-	hypothetical protein	NA	D2JLE5	Staphylococcus_phage	98.5	2.2e-26
WP_069992010.1|2009597_2011292_-|terminase	terminase	terminase	D2JLE4	Staphylococcus_phage	99.8	0.0e+00
WP_000919026.1|2011294_2011762_-|terminase	phage terminase small subunit P27 family	terminase	D2JLE3	Staphylococcus_phage	100.0	1.1e-81
WP_000817289.1|2011889_2012234_-	HNH endonuclease	NA	D2JLE2	Staphylococcus_phage	100.0	4.2e-65
WP_000406191.1|2012249_2012702_-	nucleoside triphosphate pyrophosphohydrolase family protein	NA	D2JLE1	Staphylococcus_phage	100.0	1.4e-79
WP_000282758.1|2012816_2013287_-	hypothetical protein	NA	D2JLE0	Staphylococcus_phage	98.5	5.0e-69
WP_000265041.1|2013309_2013510_-	DUF1514 family protein	NA	R9QT57	Staphylococcus_phage	100.0	1.1e-28
WP_000595305.1|2014316_2014466_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	98.0	8.2e-18
WP_000592201.1|2014462_2014849_-	hypothetical protein	NA	A0A0N9BB01	Staphylococcus_phage	96.9	3.7e-62
WP_000195803.1|2014845_2015052_-	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_001282074.1|2015048_2015294_-	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_001061838.1|2015330_2015864_-	dUTP diphosphatase	NA	U5U798	Staphylococcus_phage	97.7	7.4e-93
WP_000889682.1|2015878_2016040_-	hypothetical protein	NA	W5R9K6	Staphylococcus_phage	100.0	1.4e-23
WP_049274456.1|2016040_2016322_-	hypothetical protein	NA	A0A2I6PDX3	Staphylococcus_phage	95.7	3.6e-46
WP_000028424.1|2016322_2016496_-	hypothetical protein	NA	A0A2H4PQJ2	Staphylococcus_phage	100.0	1.8e-24
WP_001065046.1|2016485_2016737_-	DUF1024 family protein	NA	G4KNP4	Staphylococcus_phage	96.4	4.1e-38
WP_000131381.1|2016751_2016994_-	hypothetical protein	NA	A0A1P8L6E3	Staphylococcus_phage	100.0	3.0e-41
WP_000101270.1|2016997_2017366_-	hypothetical protein	NA	A0A0E3XD52	Staphylococcus_phage	100.0	6.7e-53
WP_000401965.1|2017378_2017834_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A1P8L6F2	Staphylococcus_phage	99.3	5.9e-83
WP_000338527.1|2017842_2018061_-	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	98.6	4.0e-37
WP_000148327.1|2018067_2018961_-	DnaD domain-containing protein	NA	A0A0E3TAG7	Staphylococcus_phage	97.3	6.3e-137
WP_000934762.1|2018990_2019461_-	single-stranded DNA-binding protein	NA	A0A1P8L6D9	Staphylococcus_phage	98.7	6.3e-80
WP_072353921.1|2019461_2020079_-	MBL fold metallo-hydrolase	NA	A0A1W6JPL3	Staphylococcus_phage	98.1	1.3e-85
WP_000138475.1|2020159_2021080_-	recombinase RecT	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_001205732.1|2023032_2023296_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291489.1|2023304_2023565_-	DUF1108 family protein	NA	A0A1W6JQ03	Staphylococcus_phage	100.0	7.6e-43
WP_000066020.1|2023657_2023819_-	DUF1270 domain-containing protein	NA	A0A2I6PDF7	Staphylococcus_phage	100.0	1.9e-20
WP_069992011.1|2023815_2024109_-	DUF771 domain-containing protein	NA	A0A2I6PDH6	Staphylococcus_phage	100.0	4.0e-48
WP_000801108.1|2024158_2024386_+	hypothetical protein	NA	A7TWL9	Staphylococcus_phage	100.0	1.7e-38
WP_000389906.1|2024387_2024579_-	hypothetical protein	NA	A7TWL8	Staphylococcus_phage	100.0	2.8e-26
WP_000768245.1|2024628_2024985_+	DUF2513 domain-containing protein	NA	A0A1P8L6H1	Staphylococcus_phage	100.0	6.1e-59
WP_001148852.1|2024979_2025174_-	hypothetical protein	NA	A0A1P8L6G6	Staphylococcus_phage	100.0	4.3e-19
WP_001148641.1|2025189_2025942_-	phage antirepressor KilAC domain-containing protein	NA	A0A0H3U319	Staphylococcus_phage	99.6	7.4e-139
WP_001153965.1|2026098_2026407_-	hypothetical protein	NA	S4V9P0	Staphylococcus_phage	100.0	1.3e-49
WP_001198673.1|2026421_2026640_-	helix-turn-helix transcriptional regulator	NA	Q8SDX1	Staphylococcus_phage	100.0	2.9e-35
WP_000358221.1|2026781_2027501_+	helix-turn-helix transcriptional regulator	NA	Q8SDX2	Staphylococcus_phage	99.2	1.9e-131
WP_000705240.1|2027700_2027883_+	hypothetical protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
WP_001013104.1|2027918_2028065_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	89.6	1.1e-14
WP_000191459.1|2028061_2028676_-	hypothetical protein	NA	A7TW88	Staphylococcus_phage	100.0	7.9e-107
WP_000857176.1|2028783_2029821_+|integrase	site-specific integrase	integrase	A7TWL3	Staphylococcus_phage	100.0	3.4e-179
WP_000595401.1|2030939_2031956_-	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.3	2.3e-26
WP_000791415.1|2031977_2033030_-	bi-component leukocidin LukGH subunit H	NA	A0A2I6PER8	Staphylococcus_phage	32.1	1.3e-35
WP_000206630.1|2033465_2034689_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_001108473.1|2035186_2036056_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000278575.1|2036058_2037261_-	5-aminolevulinate synthase	NA	D2TEZ5	Emiliania_huxleyi_virus	27.6	8.4e-36
WP_001045345.1|2037776_2039084_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000240642.1|2039622_2041239_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_000917289.1|2041314_2041599_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000197634.1|2041774_2042518_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
2044624:2044648	attR	ACCCCAACTTGCATTGTCTGTAGAA	NA	NA	NA	NA
