assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900095075.1_PFRJS12-1	NZ_LT604998	Propionibacterium freudenreichii isolate PFRJS12-1 chromosome I	1	2181462-2185411	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	csb1gr7,csb2gr5,cas3,csb3,cas1,cas2	csa3,cas3,WYL,DinG,DEDDh,csb1gr7,csb2gr5,csb3,cas1,cas2	Unclear	ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGG,ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC,ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC	35,36,36	0	0	NA	NA	NA:NA:NA	54,54,54	54	Unclear	csa3,cas3,WYL,DinG,DEDDh,csb1gr7,csb2gr5,csb3,cas1,cas2	NA,NA|169aa|down_0|NZ_LT604998.1_2186012_2186519_+,NA|172aa|down_1|NZ_LT604998.1_2186553_2187069_-,NA|80aa|down_2|NZ_LT604998.1_2189593_2189833_-,NA|92aa|down_4|NZ_LT604998.1_2191132_2191408_+,NA|109aa|down_8|NZ_LT604998.1_2199746_2200073_-,NA|48aa|down_9|NZ_LT604998.1_2200494_2200638_+	NA|333aa|up_9|NZ_LT604998.1_2168373_2169372_-	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|96aa|up_8|NZ_LT604998.1_2169377_2169665_-	pfam10006, DUF2249, Uncharacterized conserved protein (DUF2249)	NA|334aa|up_7|NZ_LT604998.1_2170239_2171241_+	pfam13683, rve_3, Integrase core domain	NA|425aa|up_6|NZ_LT604998.1_2171237_2172512_-	PRK08639, PRK08639, threonine dehydratase; Validated	csb1gr7|400aa|up_5|NZ_LT604998.1_2173040_2174240_+	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053)	csb2gr5|514aa|up_4|NZ_LT604998.1_2174241_2175783_+	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system	cas3|872aa|up_3|NZ_LT604998.1_2175779_2178395_+	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc	csb3|334aa|up_2|NZ_LT604998.1_2178391_2179393_+	cd09764, Csb3_I-U, CRISPR/Cas system-associated RAMP superfamily protein Csb3	cas1|534aa|up_1|NZ_LT604998.1_2179382_2180984_+	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|101aa|up_0|NZ_LT604998.1_2180980_2181283_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|169aa|down_0|NZ_LT604998.1_2186012_2186519_+	NA	NA|172aa|down_1|NZ_LT604998.1_2186553_2187069_-	NA	NA|80aa|down_2|NZ_LT604998.1_2189593_2189833_-	NA	NA|250aa|down_3|NZ_LT604998.1_2189925_2190675_-	pfam07510, DUF1524, Protein of unknown function (DUF1524)	NA|92aa|down_4|NZ_LT604998.1_2191132_2191408_+	NA	NA|439aa|down_5|NZ_LT604998.1_2191804_2193121_+	PRK12489, PRK12489, anaerobic C4-dicarboxylate transporter; Reviewed	NA|1047aa|down_6|NZ_LT604998.1_2193380_2196521_+	cd09203, PLDc_N_DEXD_b1, N-terminal putative catalytic domain of uncharacterized prokaryotic and archeal HKD family nucleases fused to a DEAD/DEAH box helicase domain	NA|345aa|down_7|NZ_LT604998.1_2198776_2199811_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|109aa|down_8|NZ_LT604998.1_2199746_2200073_-	NA	NA|48aa|down_9|NZ_LT604998.1_2200494_2200638_+	NA
GCF_900095075.1_PFRJS12-1	NZ_LT604998	Propionibacterium freudenreichii isolate PFRJS12-1 chromosome I	2	2390183-2390294	2	CRISPRCasFinder	no		csa3,cas3,WYL,DinG,DEDDh,csb1gr7,csb2gr5,csb3,cas1,cas2	Orphan	GTGGTCACCTGTGCGGCGTCATTGCCGCACAACTGCCCAC	40	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DinG,DEDDh,csb1gr7,csb2gr5,csb3,cas1,cas2	NA,NA|146aa|down_0|NZ_LT604998.1_2390444_2390882_-,NA|216aa|down_6|NZ_LT604998.1_2398009_2398657_+	NA|229aa|up_9|NZ_LT604998.1_2375753_2376440_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|313aa|up_8|NZ_LT604998.1_2376794_2377733_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|818aa|up_7|NZ_LT604998.1_2377732_2380186_+	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|279aa|up_6|NZ_LT604998.1_2380508_2381345_-	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins	NA|350aa|up_5|NZ_LT604998.1_2381455_2382505_-	COG2706, COG2706, 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]	NA|273aa|up_4|NZ_LT604998.1_2382591_2383410_+	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed	NA|240aa|up_3|NZ_LT604998.1_2383508_2384228_-	cd08563, GDPD_TtGDE_like, Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins	NA|228aa|up_2|NZ_LT604998.1_2384224_2384908_-	PRK08219, PRK08219, SDR family oxidoreductase	NA|452aa|up_1|NZ_LT604998.1_2385040_2386396_+	pfam04892, VanZ, VanZ like family	NA|872aa|up_0|NZ_LT604998.1_2387380_2389996_+	COG1316, LytR, Transcriptional regulator [Transcription]	NA|146aa|down_0|NZ_LT604998.1_2390444_2390882_-	NA	NA|324aa|down_1|NZ_LT604998.1_2391131_2392103_+	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase	NA|475aa|down_2|NZ_LT604998.1_2392276_2393701_+	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|509aa|down_3|NZ_LT604998.1_2394355_2395882_-	COG1316, LytR, Transcriptional regulator [Transcription]	NA|249aa|down_4|NZ_LT604998.1_2396265_2397012_+	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional	NA|166aa|down_5|NZ_LT604998.1_2397179_2397677_-	PRK00522, tpx, thiol peroxidase	NA|216aa|down_6|NZ_LT604998.1_2398009_2398657_+	NA	NA|374aa|down_7|NZ_LT604998.1_2398718_2399840_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|226aa|down_8|NZ_LT604998.1_2400004_2400682_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|465aa|down_9|NZ_LT604998.1_2400720_2402115_-	COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
GCF_900095075.1_PFRJS12-1	NZ_LT604998	Propionibacterium freudenreichii isolate PFRJS12-1 chromosome I	3	2462299-2462406	3	CRISPRCasFinder	no	csa3	csa3,cas3,WYL,DinG,DEDDh,csb1gr7,csb2gr5,csb3,cas1,cas2	Type I-A	ACCTCGTTCCCGTGCTGGTGCCGGCGCTGTTGGTGGC	37	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DinG,DEDDh,csb1gr7,csb2gr5,csb3,cas1,cas2	NA,NA	NA|231aa|up_9|NZ_LT604998.1_2449579_2450272_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|476aa|up_8|NZ_LT604998.1_2450268_2451696_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|416aa|up_7|NZ_LT604998.1_2451724_2452972_-	cd17393, MFS_MosC_like, Membrane protein MosC and similar proteins of the Major Facilitator Superfamily of transporters	NA|357aa|up_6|NZ_LT604998.1_2452971_2454042_-	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]	NA|259aa|up_5|NZ_LT604998.1_2454531_2455308_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|351aa|up_4|NZ_LT604998.1_2455381_2456434_-	COG0240, GpsA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]	NA|519aa|up_3|NZ_LT604998.1_2456487_2458044_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|436aa|up_2|NZ_LT604998.1_2458296_2459604_-	TIGR03942, sulfatase_rSAM, anaerobic sulfatase-maturating enzyme	NA|334aa|up_1|NZ_LT604998.1_2460226_2461228_+	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]	NA|336aa|up_0|NZ_LT604998.1_2461224_2462232_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|265aa|down_0|NZ_LT604998.1_2463117_2463912_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|673aa|down_1|NZ_LT604998.1_2465646_2467665_+	COG2015, COG2015, Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]	NA|104aa|down_2|NZ_LT604998.1_2468470_2468782_+	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|451aa|down_3|NZ_LT604998.1_2468791_2470144_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|322aa|down_4|NZ_LT604998.1_2470505_2471471_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|318aa|down_5|NZ_LT604998.1_2471839_2472793_+	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase	NA|337aa|down_6|NZ_LT604998.1_2472864_2473875_+	TIGR04380, hypothetical_protein_HOLDEFILI_04020, inositol 2-dehydrogenase	NA|289aa|down_7|NZ_LT604998.1_2474094_2474961_+	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|345aa|down_8|NZ_LT604998.1_2475109_2476144_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|313aa|down_9|NZ_LT604998.1_2476388_2477327_+	pfam12146, Hydrolase_4, Serine aminopeptidase, S33
