The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT604998	Propionibacterium freudenreichii isolate PFRJS12-1 chromosome I	2615181	260492	291105	2615181	transposase	Mycobacterium_phage(57.14%)	21	NA	NA
WP_097784142.1|260492_261800_-|transposase	ISL3-like element ISPfr4 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	77.5	2.5e-195
WP_097784143.1|262042_263038_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	32.9	1.4e-39
WP_097784144.1|263984_265244_+	hypothetical protein	NA	NA	NA	NA	NA
WP_097784145.1|265322_266630_-|transposase	ISL3-like element ISPfr6 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	72.5	1.9e-187
WP_097784146.1|266728_267511_-	DUF1343 domain-containing protein	NA	NA	NA	NA	NA
WP_097784147.1|267474_268254_-	hypothetical protein	NA	NA	NA	NA	NA
WP_097784148.1|268612_268918_-	CopG family transcriptional regulator	NA	NA	NA	NA	NA
WP_097784149.1|268914_269199_-	hypothetical protein	NA	NA	NA	NA	NA
WP_097784150.1|269266_274132_+	DEAD/DEAH box helicase	NA	A0A1X7QFZ4	Faustovirus	24.7	5.3e-28
WP_097784151.1|274136_275516_-|transposase	IS66 family transposase	transposase	NA	NA	NA	NA
WP_097784152.1|275614_275776_-	restriction endonuclease	NA	NA	NA	NA	NA
WP_097784478.1|275843_276677_-|transposase	IS5 family transposase	transposase	A0A0M5M147	Mycobacterium_phage	59.1	1.4e-93
WP_157761938.1|276890_280355_-	hypothetical protein	NA	NA	NA	NA	NA
WP_097784151.1|280552_281932_-|transposase	IS66 family transposase	transposase	NA	NA	NA	NA
WP_097784154.1|282199_283210_+	nucleotidyltransferase	NA	NA	NA	NA	NA
WP_097784155.1|283206_284673_+	ThiF family adenylyltransferase	NA	NA	NA	NA	NA
WP_097784156.1|284669_286445_+	SAVED domain-containing protein	NA	NA	NA	NA	NA
WP_097784157.1|286558_287194_-	recombinase family protein	NA	M9Q1K0	Clostridium_phage	44.3	1.1e-29
WP_157761939.1|287569_288202_+	hypothetical protein	NA	NA	NA	NA	NA
WP_097784159.1|288298_288940_+	hypothetical protein	NA	NA	NA	NA	NA
WP_097784161.1|289773_291105_+|transposase	ISL3-like element ISPfr3 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	76.5	1.3e-194
>prophage 2
NZ_LT604998	Propionibacterium freudenreichii isolate PFRJS12-1 chromosome I	2615181	1587978	1654784	2615181	protease,transposase,tRNA	Streptococcus_phage(15.38%)	56	NA	NA
WP_097784339.1|1587978_1589376_-|transposase	Mu transposase C-terminal domain-containing protein	transposase	NA	NA	NA	NA
WP_010534181.1|1589430_1590027_-	recombinase family protein	NA	I1ZBD6	Salisaeta_icosahedral_phage	40.4	4.3e-25
WP_006590980.1|1590220_1590580_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_094364785.1|1590576_1591179_+	cadmium resistance transporter	NA	NA	NA	NA	NA
WP_097784340.1|1591417_1591642_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157761974.1|1592495_1593413_-	DUF4131 domain-containing protein	NA	NA	NA	NA	NA
WP_013160772.1|1593396_1594374_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_055346154.1|1594492_1596193_-	NAD-dependent malic enzyme	NA	NA	NA	NA	NA
WP_013160770.1|1596264_1597557_-	dihydroorotase	NA	NA	NA	NA	NA
WP_013160769.1|1597613_1600142_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	42.3	1.9e-183
WP_013160768.1|1600458_1601469_-	DUF4192 domain-containing protein	NA	NA	NA	NA	NA
WP_044636087.1|1601685_1602426_+	hypothetical protein	NA	NA	NA	NA	NA
WP_036939409.1|1602728_1603649_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
WP_013160765.1|1603763_1604201_-	hypothetical protein	NA	NA	NA	NA	NA
WP_097784342.1|1604260_1604869_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_013160763.1|1604868_1605252_-	ribosome silencing factor	NA	NA	NA	NA	NA
WP_013160762.1|1605248_1606019_-	nicotinate-nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_036939775.1|1606092_1607334_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	50.6	1.0e-100
WP_044658245.1|1607343_1608012_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044658244.1|1608044_1609217_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	43.4	1.5e-66
WP_044658243.1|1609206_1610808_-	GTPase ObgE	NA	NA	NA	NA	NA
WP_013160755.1|1610956_1611220_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_013160754.1|1611233_1611542_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_055346106.1|1611777_1614564_-	Rne/Rng family ribonuclease	NA	NA	NA	NA	NA
WP_036939422.1|1614817_1615534_-	DUF2344 domain-containing protein	NA	NA	NA	NA	NA
WP_013160750.1|1615633_1616089_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_013160749.1|1616303_1617560_+	TerC family protein	NA	I7HPH5	Enterobacteria_phage	32.5	2.3e-36
WP_036939785.1|1617583_1618657_+	ionic transporter y4hA	NA	NA	NA	NA	NA
WP_055346105.1|1618720_1620664_-	TIGR03960 family B12-binding radical SAM protein	NA	NA	NA	NA	NA
WP_055346104.1|1620718_1622011_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_055346153.1|1622007_1622403_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	49.6	5.0e-30
WP_081012818.1|1622562_1624068_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_112317735.1|1624203_1624794_+	DoxX family protein	NA	NA	NA	NA	NA
WP_013160742.1|1624829_1625624_+	thioredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_097784343.1|1625887_1626682_+	thioredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_055344004.1|1626771_1629399_+|tRNA	valine--tRNA ligase	tRNA	A0A2K9KZB8	Tupanvirus	36.3	5.3e-160
WP_013160739.1|1629505_1630255_-	HAD family hydrolase	NA	NA	NA	NA	NA
WP_013160738.1|1630339_1631461_-	6-phosphofructokinase	NA	NA	NA	NA	NA
WP_044658236.1|1631539_1632982_-	threonine synthase	NA	NA	NA	NA	NA
WP_036939438.1|1633100_1633415_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013160735.1|1633526_1634804_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	59.2	4.4e-136
WP_162484287.1|1634925_1635561_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A248SJ97	Salicola_phage	38.7	1.2e-28
WP_162467436.1|1635638_1636250_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	45.6	9.8e-41
WP_060762516.1|1636360_1637593_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_013160731.1|1637825_1639019_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_013160730.1|1639243_1640827_-	trigger factor	NA	NA	NA	NA	NA
WP_044636081.1|1641561_1641876_-	multidrug efflux SMR transporter	NA	NA	NA	NA	NA
WP_013160728.1|1641987_1642236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157761975.1|1642429_1643983_+	hypothetical protein	NA	NA	NA	NA	NA
WP_044658233.1|1643979_1646274_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.9	2.3e-103
WP_013160723.1|1646350_1647145_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013160722.1|1647368_1647983_-	DSBA oxidoreductase	NA	NA	NA	NA	NA
WP_013160721.1|1648325_1650929_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	30.8	1.0e-46
WP_013160720.1|1651126_1652584_+	NADP-dependent phosphogluconate dehydrogenase	NA	A0A0P0C6S9	Ostreococcus_lucimarinus_virus	28.4	2.4e-37
WP_013160719.1|1652713_1653535_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_157761976.1|1653782_1654784_+|transposase	IS481-like element ISPfr17 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_LT604998	Propionibacterium freudenreichii isolate PFRJS12-1 chromosome I	2615181	2250951	2297208	2615181	protease,transposase,tRNA	Mycobacterium_phage(44.44%)	34	NA	NA
WP_081014147.1|2250951_2251977_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_013160211.1|2252031_2252250_-	CsbD family protein	NA	NA	NA	NA	NA
WP_097784410.1|2252419_2253502_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_044657909.1|2253498_2254653_+	thiolase family protein	NA	NA	NA	NA	NA
WP_097784411.1|2255047_2256496_+	hexose-6-phosphate:phosphate antiporter	NA	NA	NA	NA	NA
WP_048735551.1|2256488_2257340_+	inositol monophosphatase family protein	NA	NA	NA	NA	NA
WP_097784504.1|2257565_2259038_+	cytosine permease	NA	NA	NA	NA	NA
WP_097784505.1|2259085_2260012_+	carbohydrate kinase	NA	NA	NA	NA	NA
WP_097784412.1|2260096_2260537_+	(deoxy)nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_097784413.1|2260737_2261730_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_097784506.1|2261819_2263232_-	amino acid permease	NA	NA	NA	NA	NA
WP_013160197.1|2263903_2265322_-	MFS transporter	NA	NA	NA	NA	NA
WP_044635917.1|2265609_2266338_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	45.2	5.3e-17
WP_097784414.1|2266344_2268024_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_044635915.1|2268016_2269405_-	MFS transporter	NA	NA	NA	NA	NA
WP_097784415.1|2269806_2272206_-	glycoside hydrolase family 3 C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_044635852.1|2272653_2273964_+|transposase	ISL3-like element ISPfr18 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	69.8	4.5e-176
WP_097784507.1|2274014_2275448_-	UDP-glucose/GDP-mannose dehydrogenase family protein	NA	A0A127AXI2	Bacillus_phage	32.0	1.0e-48
WP_097784416.1|2275539_2277174_+|tRNA	arginine--tRNA ligase	tRNA	A0A2K9L2F0	Tupanvirus	35.1	1.1e-81
WP_112317766.1|2277351_2278236_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.6	5.8e-10
WP_013160184.1|2278238_2279204_-	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA	NA
WP_172952190.1|2279317_2280376_-	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA	NA
WP_097784417.1|2280623_2281619_+	iron-siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_172952191.1|2281797_2282601_-	ROK family protein	NA	NA	NA	NA	NA
WP_013160188.1|2282698_2284096_-	DASS family sodium-coupled anion symporter	NA	NA	NA	NA	NA
WP_013160189.1|2284408_2285383_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	34.5	2.3e-44
WP_055346248.1|2285439_2286126_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_044635852.1|2286132_2287443_-|transposase	ISL3-like element ISPfr18 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	69.8	4.5e-176
WP_157761985.1|2287687_2288104_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157761986.1|2288157_2289987_-	DUF1906 domain-containing protein	NA	NA	NA	NA	NA
WP_048770132.1|2290091_2291126_-|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_026138135.1|2291479_2292805_-|transposase	ISL3-like element ISPfr2 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	77.0	3.6e-197
WP_048734242.1|2294927_2295437_+	hypothetical protein	NA	NA	NA	NA	NA
WP_026138135.1|2295882_2297208_+|transposase	ISL3-like element ISPfr2 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	77.0	3.6e-197
