assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900092755.1_PFRJS22-geno	NZ_LT599498	Propionibacterium freudenreichii isolate PFRJS22-genome chromosome I	1	386653-386817	1	CRISPRCasFinder	no		csa3,cas3,WYL,DinG,DEDDh	Orphan	GCCAAGAAGCCGGCAGCGAAGAAG	24	0	0	NA	NA	NA	3	3	Orphan	csa3,cas3,WYL,DinG,DEDDh	NA|153aa|up_9|NZ_LT599498.1_371237_371696_+,NA|89aa|up_7|NZ_LT599498.1_372351_372618_-,NA|482aa|down_0|NZ_LT599498.1_386884_388330_+	NA|153aa|up_9|NZ_LT599498.1_371237_371696_+	NA	NA|111aa|up_8|NZ_LT599498.1_371857_372190_+	TIGR03816, tadE_like_DECH, helicase/secretion neighborhood TadE-like protein	NA|89aa|up_7|NZ_LT599498.1_372351_372618_-	NA	NA|164aa|up_6|NZ_LT599498.1_373103_373595_+	pfam02613, Nitrate_red_del, Nitrate reductase delta subunit	NA|404aa|up_5|NZ_LT599498.1_373810_375022_+	COG1145, NapF, Ferredoxin [Energy production and conversion]	NA|868aa|up_4|NZ_LT599498.1_375155_377759_+	TIGR02166, Putative_dimethyl_sulfoxide_reductase_chain_YnfE, anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family	NA|215aa|up_3|NZ_LT599498.1_377772_378417_+	TIGR02951, anaerobic_dimethyl_sulfoxide_reductase_subunit_B, DMSO reductase, iron-sulfur subunit	NA|335aa|up_2|NZ_LT599498.1_378416_379421_+	COG3302, DmsC, DMSO reductase anchor subunit [General function prediction only]	NA|821aa|up_1|NZ_LT599498.1_379417_381880_-	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase	NA|506aa|up_0|NZ_LT599498.1_382129_383647_+	pfam05175, MTS, Methyltransferase small domain	NA|482aa|down_0|NZ_LT599498.1_386884_388330_+	NA	NA|213aa|down_1|NZ_LT599498.1_388326_388965_+	PRK00698, tmk, thymidylate kinase; Validated	NA|438aa|down_2|NZ_LT599498.1_389291_390605_+	PRK07940, PRK07940, DNA polymerase III subunit delta'; Validated	NA|563aa|down_3|NZ_LT599498.1_390752_392441_+	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau	NA|350aa|down_4|NZ_LT599498.1_392570_393620_+	COG1774, COG1774, Uncharacterized homolog of PSP1 [Function unknown]	NA|281aa|down_5|NZ_LT599498.1_393974_394817_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|505aa|down_6|NZ_LT599498.1_394816_396331_-	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|484aa|down_7|NZ_LT599498.1_396595_398047_+	PRK11049, PRK11049, D-alanine/D-serine/glycine permease; Provisional	NA|446aa|down_8|NZ_LT599498.1_398240_399578_+	COG1231, COG1231, Monoamine oxidase [Amino acid transport and metabolism]	NA|442aa|down_9|NZ_LT599498.1_399977_401303_-	pfam01610, DDE_Tnp_ISL3, Transposase
GCF_900092755.1_PFRJS22-geno	NZ_LT599498	Propionibacterium freudenreichii isolate PFRJS22-genome chromosome I	2	2150779-2151318	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no		csa3,cas3,WYL,DinG,DEDDh	Orphan	ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGG,ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC,ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC	35,36,36	0	0	NA	NA	NA:NA:NA	7,7,7	7	Orphan	csa3,cas3,WYL,DinG,DEDDh	NA|432aa|up_9|NZ_LT599498.1_2137711_2139007_-,NA|53aa|up_4|NZ_LT599498.1_2144659_2144818_+,NA|395aa|up_1|NZ_LT599498.1_2148197_2149382_-,NA|169aa|down_0|NZ_LT599498.1_2151919_2152426_+,NA|172aa|down_1|NZ_LT599498.1_2152460_2152976_-,NA|80aa|down_3|NZ_LT599498.1_2155558_2155798_-,NA|48aa|down_7|NZ_LT599498.1_2160420_2160564_+,NA|105aa|down_8|NZ_LT599498.1_2160796_2161111_+,NA|58aa|down_9|NZ_LT599498.1_2161340_2161514_+	NA|432aa|up_9|NZ_LT599498.1_2137711_2139007_-	NA	NA|362aa|up_8|NZ_LT599498.1_2139081_2140167_-	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|96aa|up_7|NZ_LT599498.1_2140172_2140460_-	pfam10006, DUF2249, Uncharacterized conserved protein (DUF2249)	NA|425aa|up_6|NZ_LT599498.1_2140933_2142208_-	PRK08639, PRK08639, threonine dehydratase; Validated	NA|704aa|up_5|NZ_LT599498.1_2142533_2144645_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|53aa|up_4|NZ_LT599498.1_2144659_2144818_+	NA	NA|585aa|up_3|NZ_LT599498.1_2144890_2146645_-	TIGR04141, conserved_hypothetical_protein, sporadically distributed protein, TIGR04141 family	NA|408aa|up_2|NZ_LT599498.1_2146937_2148161_+	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|395aa|up_1|NZ_LT599498.1_2148197_2149382_-	NA	NA|404aa|up_0|NZ_LT599498.1_2149513_2150724_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|169aa|down_0|NZ_LT599498.1_2151919_2152426_+	NA	NA|172aa|down_1|NZ_LT599498.1_2152460_2152976_-	NA	NA|409aa|down_2|NZ_LT599498.1_2153146_2154373_-	PRK06849, PRK06849, hypothetical protein; Provisional	NA|80aa|down_3|NZ_LT599498.1_2155558_2155798_-	NA	NA|250aa|down_4|NZ_LT599498.1_2155890_2156640_-	pfam07510, DUF1524, Protein of unknown function (DUF1524)	NA|767aa|down_5|NZ_LT599498.1_2156738_2159039_+	cd09203, PLDc_N_DEXD_b1, N-terminal putative catalytic domain of uncharacterized prokaryotic and archeal HKD family nucleases fused to a DEAD/DEAH box helicase domain	NA|289aa|down_6|NZ_LT599498.1_2159035_2159902_+	pfam11907, DUF3427, Domain of unknown function (DUF3427)	NA|48aa|down_7|NZ_LT599498.1_2160420_2160564_+	NA	NA|105aa|down_8|NZ_LT599498.1_2160796_2161111_+	NA	NA|58aa|down_9|NZ_LT599498.1_2161340_2161514_+	NA
GCF_900092755.1_PFRJS22-geno	NZ_LT599498	Propionibacterium freudenreichii isolate PFRJS22-genome chromosome I	3	2417993-2418087	3	CRISPRCasFinder	no	DEDDh	csa3,cas3,WYL,DinG,DEDDh	Unclear	GTGGTCACCTGTGCGGCGTCATT	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DinG,DEDDh	NA|94aa|up_1|NZ_LT599498.1_2413967_2414249_+,NA|146aa|down_1|NZ_LT599498.1_2419597_2420035_-,NA|216aa|down_7|NZ_LT599498.1_2427162_2427810_+	NA|293aa|up_9|NZ_LT599498.1_2404873_2405752_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|819aa|up_8|NZ_LT599498.1_2405751_2408208_+	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|279aa|up_7|NZ_LT599498.1_2408361_2409198_-	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins	NA|350aa|up_6|NZ_LT599498.1_2409308_2410358_-	COG2706, COG2706, 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]	NA|273aa|up_5|NZ_LT599498.1_2410444_2411263_+	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed	NA|240aa|up_4|NZ_LT599498.1_2411361_2412081_-	cd08563, GDPD_TtGDE_like, Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins	NA|228aa|up_3|NZ_LT599498.1_2412077_2412761_-	PRK08219, PRK08219, SDR family oxidoreductase	NA|363aa|up_2|NZ_LT599498.1_2412952_2414041_+	pfam04892, VanZ, VanZ like family	NA|94aa|up_1|NZ_LT599498.1_2413967_2414249_+	NA	NA|863aa|up_0|NZ_LT599498.1_2415217_2417806_+	COG1316, LytR, Transcriptional regulator [Transcription]	NA|402aa|down_0|NZ_LT599498.1_2418142_2419348_-	pfam00665, rve, Integrase core domain	NA|146aa|down_1|NZ_LT599498.1_2419597_2420035_-	NA	NA|324aa|down_2|NZ_LT599498.1_2420284_2421256_+	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase	NA|475aa|down_3|NZ_LT599498.1_2421429_2422854_+	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|509aa|down_4|NZ_LT599498.1_2423508_2425035_-	COG1316, LytR, Transcriptional regulator [Transcription]	NA|249aa|down_5|NZ_LT599498.1_2425418_2426165_+	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional	NA|166aa|down_6|NZ_LT599498.1_2426332_2426830_-	PRK00522, tpx, thiol peroxidase	NA|216aa|down_7|NZ_LT599498.1_2427162_2427810_+	NA	NA|374aa|down_8|NZ_LT599498.1_2427871_2428993_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|226aa|down_9|NZ_LT599498.1_2429157_2429835_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
