assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900092615.1_PRJEB14041	NZ_LT601384	Escherichia coli isolate NCTC86EC chromosome I	1	593544-593661	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,c2c9_V-U4,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,c2c9_V-U4,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	NA,NA	NA|62aa|up_9|NZ_LT601384.1_582829_583015_-	PRK09956, PRK09956, ISNCY family transposase	NA|300aa|up_8|NZ_LT601384.1_583027_583927_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_LT601384.1_584119_585310_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_LT601384.1_585306_586566_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_LT601384.1_586555_588184_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_LT601384.1_588456_589815_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_LT601384.1_589819_590896_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_LT601384.1_591358_592009_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_LT601384.1_592062_592317_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_LT601384.1_592316_593447_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_LT601384.1_593680_595966_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_LT601384.1_596661_600414_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_LT601384.1_600541_601264_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_LT601384.1_601410_604038_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_LT601384.1_604186_605875_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_LT601384.1_605871_606495_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_LT601384.1_606638_611033_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_LT601384.1_611033_612683_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_LT601384.1_612687_613464_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|441aa|down_9|NZ_LT601384.1_614753_616076_-	pfam02667, SCFA_trans, Short chain fatty acid transporter
GCF_900092615.1_PRJEB14041	NZ_LT601384	Escherichia coli isolate NCTC86EC chromosome I	2	1235052-1235175	2	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,c2c9_V-U4,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,c2c9_V-U4,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	NA,NA|30aa|down_7|NZ_LT601384.1_1244071_1244161_+	NA|335aa|up_9|NZ_LT601384.1_1222893_1223898_+	PRK10190, PRK10190, L,D-transpeptidase; Provisional	NA|79aa|up_8|NZ_LT601384.1_1223961_1224198_-	PRK15396, PRK15396, major outer membrane lipoprotein	NA|471aa|up_7|NZ_LT601384.1_1224508_1225921_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_6|NZ_LT601384.1_1226477_1226687_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_5|NZ_LT601384.1_1227141_1227768_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_4|NZ_LT601384.1_1227788_1229891_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_3|NZ_LT601384.1_1229903_1230542_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_2|NZ_LT601384.1_1230605_1231274_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_1|NZ_LT601384.1_1231270_1232056_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|102aa|up_0|NZ_LT601384.1_1234611_1234917_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_LT601384.1_1235489_1236746_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_LT601384.1_1236786_1238160_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_LT601384.1_1238374_1239016_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_LT601384.1_1239055_1240204_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_LT601384.1_1240494_1241706_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_LT601384.1_1241818_1242751_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_LT601384.1_1242747_1243773_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_LT601384.1_1244071_1244161_+	NA	NA|194aa|down_8|NZ_LT601384.1_1245728_1246310_-	PRK10543, PRK10543, superoxide dismutase [Fe]	NA|272aa|down_9|NZ_LT601384.1_1246437_1247253_-	pfam00877, NLPC_P60, NlpC/P60 family
GCF_900092615.1_PRJEB14041	NZ_LT601384	Escherichia coli isolate NCTC86EC chromosome I	3	1926548-1926683	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,c2c9_V-U4,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	Orphan	CGTGTATCTGGCATTGTCATTTTCCTCCGGGTTGCAGA	38	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,c2c9_V-U4,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	NA|61aa|up_2|NZ_LT601384.1_1923134_1923317_+,NA|169aa|down_0|NZ_LT601384.1_1926966_1927473_-,NA|58aa|down_1|NZ_LT601384.1_1927670_1927844_-	NA|159aa|up_9|NZ_LT601384.1_1915134_1915611_-	COG2003, RadC, DNA repair proteins [DNA replication, recombination, and repair]	NA|162aa|up_8|NZ_LT601384.1_1915626_1916112_-	pfam03230, Antirestrict, Antirestriction protein	NA|273aa|up_7|NZ_LT601384.1_1916202_1917021_-	pfam06067, DUF932, Domain of unknown function (DUF932)	NA|357aa|up_6|NZ_LT601384.1_1917360_1918431_-	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|302aa|up_5|NZ_LT601384.1_1918427_1919333_-	pfam13990, YjcZ, YjcZ-like protein	NA|795aa|up_4|NZ_LT601384.1_1919329_1921714_-	PRK09866, PRK09866, clamp-binding protein CrfC	NA|291aa|up_3|NZ_LT601384.1_1921931_1922804_-	COG3596, COG3596, Predicted GTPase [General function prediction only]	NA|61aa|up_2|NZ_LT601384.1_1923134_1923317_+	NA	NA|142aa|up_1|NZ_LT601384.1_1923616_1924042_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|127aa|up_0|NZ_LT601384.1_1925857_1926238_-	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|169aa|down_0|NZ_LT601384.1_1926966_1927473_-	NA	NA|58aa|down_1|NZ_LT601384.1_1927670_1927844_-	NA	NA|148aa|down_2|NZ_LT601384.1_1928215_1928659_-	cd18776, AfaD-like, AfaD and similar proteins	NA|266aa|down_3|NZ_LT601384.1_1931297_1932095_-	PRK15224, PRK15224, pili assembly chaperone PapD	NA|102aa|down_4|NZ_LT601384.1_1932434_1932740_-	pfam03333, PapB, Adhesin biosynthesis transcription regulatory protein	NA|391aa|down_5|NZ_LT601384.1_1933590_1934763_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|266aa|down_6|NZ_LT601384.1_1934762_1935560_+	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|76aa|down_7|NZ_LT601384.1_1935793_1936021_+	pfam04703, FaeA, FaeA-like protein	NA|303aa|down_8|NZ_LT601384.1_1936305_1937214_-	PRK09956, PRK09956, ISNCY family transposase	NA|696aa|down_9|NZ_LT601384.1_1938032_1940120_-	PRK13486, PRK13486, TonB-dependent receptor
GCF_900092615.1_PRJEB14041	NZ_LT601384	Escherichia coli isolate NCTC86EC chromosome I	4	1980191-1980282	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,c2c9_V-U4,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,c2c9_V-U4,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	NA|70aa|up_9|NZ_LT601384.1_1969267_1969477_-,NA	NA|70aa|up_9|NZ_LT601384.1_1969267_1969477_-	NA	NA|1321aa|up_8|NZ_LT601384.1_1969531_1973494_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_LT601384.1_1973533_1974172_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_LT601384.1_1974459_1975551_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_LT601384.1_1975550_1976243_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_LT601384.1_1976254_1976641_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_LT601384.1_1976648_1977449_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_LT601384.1_1977458_1978049_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_LT601384.1_1978059_1978554_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_LT601384.1_1978574_1979903_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_LT601384.1_1980705_1981302_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_LT601384.1_1981322_1981550_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_LT601384.1_1981587_1982829_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|307aa|down_3|NZ_LT601384.1_1984637_1985558_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_4|NZ_LT601384.1_1985557_1985863_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_5|NZ_LT601384.1_1986014_1986614_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_6|NZ_LT601384.1_1986610_1989157_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_7|NZ_LT601384.1_1989156_1990329_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_8|NZ_LT601384.1_1990458_1991151_+	PRK10766, PRK10766, two-component system response regulator TorR	NA|343aa|down_9|NZ_LT601384.1_1991123_1992152_-	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional
GCF_900092615.1_PRJEB14041	NZ_LT601384	Escherichia coli isolate NCTC86EC chromosome I	5	2368758-2368902	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,c2c9_V-U4,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,c2c9_V-U4,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	NA,NA	NA|330aa|up_9|NZ_LT601384.1_2356656_2357646_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_LT601384.1_2358042_2358951_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_LT601384.1_2359142_2361164_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_LT601384.1_2361742_2362420_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_LT601384.1_2362412_2363168_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_LT601384.1_2363154_2364309_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_LT601384.1_2364305_2365346_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_LT601384.1_2365432_2366722_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_LT601384.1_2366780_2367257_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_LT601384.1_2367408_2368692_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_LT601384.1_2368925_2371187_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_LT601384.1_2371369_2372803_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_LT601384.1_2372878_2373931_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_LT601384.1_2374114_2375068_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_LT601384.1_2375108_2376104_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_LT601384.1_2376258_2377077_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_LT601384.1_2377077_2378136_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_LT601384.1_2378138_2378828_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_LT601384.1_2378827_2379601_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_LT601384.1_2379767_2379917_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_900092615.1_PRJEB14041	NZ_LT601384	Escherichia coli isolate NCTC86EC chromosome I	6	2799382-2799526	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,c2c9_V-U4,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,c2c9_V-U4,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	NA,NA|28aa|down_2|NZ_LT601384.1_2801571_2801655_-	NA|357aa|up_9|NZ_LT601384.1_2784520_2785591_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NZ_LT601384.1_2785683_2786265_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|NZ_LT601384.1_2786269_2788087_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NZ_LT601384.1_2788242_2789616_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_LT601384.1_2789691_2791011_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_LT601384.1_2791417_2792713_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_LT601384.1_2792770_2793460_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_LT601384.1_2793649_2794852_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|NZ_LT601384.1_2794848_2797995_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_LT601384.1_2798120_2799305_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NZ_LT601384.1_2799549_2800458_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NZ_LT601384.1_2800582_2801494_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|28aa|down_2|NZ_LT601384.1_2801571_2801655_-	NA	NA|95aa|down_3|NZ_LT601384.1_2802140_2802425_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NZ_LT601384.1_2802496_2803174_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|NZ_LT601384.1_2803431_2803623_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|NZ_LT601384.1_2803672_2804197_-	PRK03731, aroL, shikimate kinase AroL	NA|153aa|down_7|NZ_LT601384.1_2804379_2804838_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|NZ_LT601384.1_2804957_2805767_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|107aa|down_9|NZ_LT601384.1_2806999_2807320_-	PRK11505, PRK11505, phosphate starvation-inducible protein PsiF
GCF_900092615.1_PRJEB14041	NZ_LT601384	Escherichia coli isolate NCTC86EC chromosome I	7	3156652-3157353	7,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,DEDDh,DinG,c2c9_V-U4,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	11,11,5	11	TypeI-E	cas3,DEDDh,DinG,c2c9_V-U4,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	NA,NA	NA|254aa|up_9|NZ_LT601384.1_3148463_3149225_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_LT601384.1_3149205_3150255_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_LT601384.1_3150251_3150731_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_LT601384.1_3150730_3151441_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_LT601384.1_3151459_3151771_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_LT601384.1_3151964_3152288_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_LT601384.1_3152337_3152943_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_LT601384.1_3152942_3154370_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_LT601384.1_3154371_3155280_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_LT601384.1_3155531_3156569_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|95aa|down_0|NZ_LT601384.1_3157458_3157743_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|306aa|down_1|NZ_LT601384.1_3157744_3158662_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|200aa|down_2|NZ_LT601384.1_3158677_3159277_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|225aa|down_3|NZ_LT601384.1_3159263_3159938_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|364aa|down_4|NZ_LT601384.1_3159940_3161032_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|161aa|down_5|NZ_LT601384.1_3161044_3161527_-	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|503aa|down_6|NZ_LT601384.1_3161519_3163028_-	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cas3|889aa|down_7|NZ_LT601384.1_3163442_3166109_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|245aa|down_8|NZ_LT601384.1_3166467_3167202_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|NZ_LT601384.1_3167276_3168989_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_900092615.1_PRJEB14041	NZ_LT601384	Escherichia coli isolate NCTC86EC chromosome I	8	3182842-3183175	8,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	cas3,DEDDh,DinG,c2c9_V-U4,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	5,5,4	5	Unclear	cas3,DEDDh,DinG,c2c9_V-U4,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	NA,NA|47aa|down_1|NZ_LT601384.1_3184324_3184465_+	NA|424aa|up_9|NZ_LT601384.1_3171546_3172818_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_LT601384.1_3172808_3173069_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_LT601384.1_3173085_3173661_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_LT601384.1_3173808_3174669_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_LT601384.1_3174665_3175445_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_LT601384.1_3175422_3176832_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_LT601384.1_3176853_3178308_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_LT601384.1_3178377_3179163_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_LT601384.1_3179481_3180759_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_LT601384.1_3180785_3182264_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_LT601384.1_3183514_3184186_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_LT601384.1_3184324_3184465_+	NA	NA|291aa|down_2|NZ_LT601384.1_3184478_3185351_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_LT601384.1_3185410_3186709_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_LT601384.1_3186796_3188434_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_LT601384.1_3188661_3189453_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_LT601384.1_3189523_3189859_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_LT601384.1_3189858_3190107_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_LT601384.1_3190184_3192419_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_LT601384.1_3192466_3193768_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
GCF_900092615.1_PRJEB14041	NZ_LT601384	Escherichia coli isolate NCTC86EC chromosome I	9	4956870-4957003	9	CRISPRCasFinder	no		cas3,DEDDh,DinG,c2c9_V-U4,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	Orphan	TACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	38	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,c2c9_V-U4,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	NA|528aa|up_6|NZ_LT601384.1_4948071_4949655_+,NA	NA|132aa|up_9|NZ_LT601384.1_4945450_4945846_-	cd02198, YjgH_like, YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|238aa|up_8|NZ_LT601384.1_4945976_4946690_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_7|NZ_LT601384.1_4946760_4947354_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|528aa|up_6|NZ_LT601384.1_4948071_4949655_+	NA	NA|335aa|up_5|NZ_LT601384.1_4949811_4950816_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_LT601384.1_4950977_4951394_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_LT601384.1_4951439_4951943_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|NZ_LT601384.1_4952135_4953332_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_LT601384.1_4953387_4956243_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_LT601384.1_4956242_4956686_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_LT601384.1_4957039_4958551_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_LT601384.1_4958817_4959918_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_LT601384.1_4959917_4961000_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_LT601384.1_4961118_4962621_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|333aa|down_4|NZ_LT601384.1_4962698_4963697_-	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|440aa|down_5|NZ_LT601384.1_4963763_4965083_-	TIGR00791, Gluconate_permease, gluconate transporter	NA|255aa|down_6|NZ_LT601384.1_4965147_4965912_-	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|344aa|down_7|NZ_LT601384.1_4965935_4966967_-	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|188aa|down_8|NZ_LT601384.1_4967182_4967746_+	PRK09825, idnK, gluconokinase	NA|340aa|down_9|NZ_LT601384.1_4967749_4968769_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)
