The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT598663	Enterococcus faecium isolate Ef_aus00233 chromosome 1	2888087	635508	643139	2888087		Streptococcus_phage(87.5%)	9	NA	NA
WP_000420682.1|635508_635823_+	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
WP_000985015.1|635838_636225_+	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
WP_000813488.1|636253_637639_+	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
WP_000879507.1|637641_637794_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000398284.1|637816_639022_+	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
WP_002286940.1|639805_641716_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	29.8	7.1e-37
WP_032509114.1|641819_642044_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	97.1	8.5e-27
WP_000342539.1|642160_642658_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
WP_000506270.1|642632_643139_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
>prophage 2
NZ_LT598663	Enterococcus faecium isolate Ef_aus00233 chromosome 1	2888087	648252	658469	2888087	integrase	Streptococcus_phage(100.0%)	11	646845:646859	659238:659252
646845:646859	attL	TGTAACAAAAGAAGA	NA	NA	NA	NA
WP_000804748.1|648252_650430_+	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	100.0	0.0e+00
WP_000769868.1|650426_651428_+	lysozyme family protein	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
WP_001224318.1|651424_652357_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.4	3.1e-171
WP_001814923.1|652601_652718_+	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_000691749.1|652733_654653_+	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	99.4	0.0e+00
WP_000336323.1|654771_654939_+	cysteine-rich KTR domain-containing protein	NA	D0R0F6	Streptococcus_phage	68.0	1.6e-14
WP_020944828.1|654998_655352_-	helix-turn-helix domain-containing protein	NA	A0A1S5SFA6	Streptococcus_phage	99.1	1.7e-58
WP_000804885.1|655856_656279_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
WP_000857133.1|656275_656506_+	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
WP_000814511.1|656966_657170_+	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
WP_010785527.1|657251_658469_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5SEW7	Streptococcus_phage	99.8	8.3e-233
659238:659252	attR	TGTAACAAAAGAAGA	NA	NA	NA	NA
>prophage 3
NZ_LT598663	Enterococcus faecium isolate Ef_aus00233 chromosome 1	2888087	781022	789494	2888087		Streptococcus_phage(66.67%)	9	NA	NA
WP_002294039.1|781022_781667_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	52.6	4.2e-58
WP_002292340.1|781681_782011_+	cyclic-di-AMP receptor	NA	NA	NA	NA	NA
WP_002288071.1|782024_782963_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	34.4	3.3e-35
WP_002288073.1|782998_783823_+	stage 0 sporulation family protein	NA	NA	NA	NA	NA
WP_002288076.1|783815_784163_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	41.1	5.1e-18
WP_002288078.1|784231_785104_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	60.4	3.1e-88
WP_002294035.1|785212_786334_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_002288081.1|786387_786990_-	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	58.6	1.7e-53
WP_002288083.1|787304_789494_-	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	66.6	1.8e-286
>prophage 4
NZ_LT598663	Enterococcus faecium isolate Ef_aus00233 chromosome 1	2888087	899995	957161	2888087	portal,protease,head,capsid,tRNA,transposase,tail,integrase,holin,terminase	Enterococcus_phage(30.3%)	78	955576:955591	958927:958942
WP_002286621.1|899995_902794_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A2H4UVG0	Bodo_saltans_virus	26.4	1.6e-74
WP_002286618.1|902842_904369_-	glucose-6-phosphate dehydrogenase	NA	H6WFS4	Cyanophage	35.3	8.9e-75
WP_002286616.1|904383_905031_-	metal-dependent transcriptional regulator	NA	NA	NA	NA	NA
WP_002286678.1|905214_905544_-	DUF4828 domain-containing protein	NA	NA	NA	NA	NA
WP_002286614.1|905720_906449_+	DNA/RNA nuclease SfsA	NA	NA	NA	NA	NA
WP_002286612.1|906464_907478_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_002286608.1|907477_908755_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	28.8	5.8e-35
WP_002286607.1|908817_911520_+	sigma-54-dependent transcriptional regulator	NA	NA	NA	NA	NA
WP_002286606.1|911671_911989_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_002286604.1|912018_912339_+	PTS lactose/cellobiose transporter subunit IIA	NA	NA	NA	NA	NA
WP_002286601.1|912446_913907_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_002286598.1|913974_914196_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286596.1|914226_914409_+	DUF3188 domain-containing protein	NA	NA	NA	NA	NA
WP_002286592.1|914408_914822_+	DUF3284 domain-containing protein	NA	NA	NA	NA	NA
WP_002286589.1|914944_916126_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002286676.1|916196_916361_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002286587.1|916656_917796_-|integrase	site-specific integrase	integrase	Q9AZR0	Lactococcus_phage	47.1	2.6e-95
WP_002303012.1|918094_918730_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296616.1|918842_919478_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303013.1|919511_919973_-	SHOCT domain-containing protein	NA	A0A0F6N4L7	Staphylococcus_phage	34.8	4.5e-06
WP_002296613.1|920102_920534_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_002296612.1|920551_920872_-	helix-turn-helix transcriptional regulator	NA	A0A1S5SDR1	Streptococcus_phage	40.2	2.0e-13
WP_002290310.1|921170_921947_+	phage antirepressor KilAC domain-containing protein	NA	A0A1Q1PVU2	Staphylococcus_phage	53.8	1.1e-73
WP_002296611.1|921961_922165_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002286573.1|922180_922519_+	DUF771 domain-containing protein	NA	NA	NA	NA	NA
WP_002296610.1|922505_922685_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286568.1|922727_923198_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002286562.1|923284_923983_+	phage regulatory protein	NA	D2IYT0	Enterococcus_phage	34.6	1.7e-25
WP_002286559.1|924160_924502_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286557.1|924494_925166_+	DUF1071 domain-containing protein	NA	A0A1B1P7F0	Bacillus_phage	47.4	4.2e-29
WP_002286553.1|925171_925858_+	hypothetical protein	NA	C9E2N1	Enterococcus_phage	69.1	3.2e-88
WP_002286552.1|925860_926610_+	helix-turn-helix domain-containing protein	NA	A0A1L2BY83	Clostridium_phage	54.0	1.7e-31
WP_002286696.1|926621_926891_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296607.1|926895_927060_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286695.1|927052_927355_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296606.1|927351_927513_+	antitoxin	NA	NA	NA	NA	NA
WP_002286694.1|927509_927815_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286550.1|927814_928171_+	DUF1140 family protein	NA	A0A2H4JAZ4	uncultured_Caudovirales_phage	37.4	3.1e-10
WP_002322165.1|928157_928376_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286547.1|928372_928792_+	hypothetical protein	NA	D2IZL0	Enterococcus_phage	54.3	4.1e-30
WP_002286545.1|928788_929346_+	DUF1642 domain-containing protein	NA	A0A0C5KKV2	Enterococcus_phage	36.2	2.8e-10
WP_002286693.1|929342_929639_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286542.1|929715_930129_+	autolysin	NA	C9E2P5	Enterococcus_phage	81.0	1.5e-56
WP_002296602.1|930437_930590_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002300143.1|930586_930862_-	hypothetical protein	NA	A0A2H4JEH2	uncultured_Caudovirales_phage	45.7	9.9e-17
WP_002311723.1|931315_931522_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296600.1|931717_931885_+	thymidylate synthase	NA	NA	NA	NA	NA
WP_002286540.1|931910_932255_+	HNH endonuclease	NA	A0A1B1P757	Bacillus_phage	57.1	3.8e-26
WP_002296599.1|932259_932541_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286538.1|932643_932958_+|terminase	terminase	terminase	A0A1S7FYW6	Listeria_phage	37.9	3.3e-08
WP_002286533.1|932935_934630_+|terminase	terminase large subunit	terminase	A0A1B1P766	Bacillus_phage	49.6	3.0e-148
WP_002286530.1|934649_935828_+|portal	phage portal protein	portal	A0A1B1P754	Bacillus_phage	40.4	5.4e-80
WP_002286527.1|935790_936477_+|protease	Clp protease ClpP	protease	A0A2I6PDD0	Staphylococcus_phage	39.7	1.0e-30
WP_002286525.1|936476_937637_+|capsid	phage major capsid protein	capsid	A0A1B1P752	Bacillus_phage	50.1	1.8e-99
WP_002286524.1|937646_938522_+	hypothetical protein	NA	D2IYX3	Enterococcus_phage	74.2	5.6e-130
WP_002286523.1|938518_938830_+	hypothetical protein	NA	A0A1B1P751	Bacillus_phage	42.1	6.3e-12
WP_002286522.1|938819_939173_+|head	phage head closure protein	head	NA	NA	NA	NA
WP_002296598.1|939162_939564_+	hypothetical protein	NA	A0A1B1P759	Bacillus_phage	33.3	1.1e-13
WP_002286516.1|939556_939961_+	hypothetical protein	NA	R4IBU7	Listeria_phage	29.5	6.1e-07
WP_002305379.1|939972_940578_+	hypothetical protein	NA	Q8W5Z9	Listeria_phage	41.6	1.1e-33
WP_002286510.1|940597_940960_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002305377.1|940962_941145_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060797415.1|941161_944593_+|tail	phage tail tape measure protein	tail	A0A1D3SNL5	Enterococcus_phage	44.7	8.2e-68
WP_002286500.1|944643_945381_+|tail	phage tail protein	tail	NA	NA	NA	NA
WP_002296595.1|945390_947682_+|tail	phage tail protein	tail	A0A1D3SNL1	Enterococcus_phage	30.0	1.6e-88
WP_079504073.1|947705_949832_+	hypothetical protein	NA	A0A060AI60	Enterococcus_phage	40.1	1.4e-62
WP_002290627.1|949848_949998_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286491.1|949994_950441_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296594.1|950442_950580_+	XkdX family protein	NA	NA	NA	NA	NA
WP_002286686.1|950617_950911_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286683.1|950907_951132_+|holin	holin	holin	NA	NA	NA	NA
WP_002286484.1|951128_952154_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A139ZVY1	Enterococcus_phage	61.3	2.1e-64
WP_087046766.1|953093_954255_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.2	4.1e-80
WP_002286474.1|955178_955586_+	hypothetical protein	NA	NA	NA	NA	NA
955576:955591	attL	AAAAAAATTAAGGAGA	NA	NA	NA	NA
WP_002296902.1|955599_956001_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286473.1|956002_956374_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286680.1|956409_956712_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002286470.1|956960_957161_-|integrase	tyrosine-type recombinase/integrase	integrase	Q9AZR0	Lactococcus_phage	75.7	4.6e-08
958927:958942	attR	AAAAAAATTAAGGAGA	NA	NA	NA	NA
>prophage 5
NZ_LT598663	Enterococcus faecium isolate Ef_aus00233 chromosome 1	2888087	1271324	1280385	2888087		Gordonia_phage(16.67%)	9	NA	NA
WP_002288023.1|1271324_1272620_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.1	4.5e-19
WP_002297115.1|1272799_1273177_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002288021.1|1273432_1274161_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	E3SPA9	Prochlorococcus_phage	41.4	4.6e-45
WP_002295474.1|1274160_1274415_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_002288017.1|1274416_1275088_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_002288015.1|1275088_1277311_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.3	1.9e-150
WP_002288013.1|1277295_1278735_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	33.1	5.3e-53
WP_002288011.1|1278757_1279810_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	43.7	2.7e-62
WP_002288010.1|1279806_1280385_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	37.4	1.3e-26
>prophage 6
NZ_LT598663	Enterococcus faecium isolate Ef_aus00233 chromosome 1	2888087	1547417	1593619	2888087	protease,transposase	Streptococcus_phage(25.0%)	57	NA	NA
WP_002303350.1|1547417_1548377_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_079504083.1|1548799_1550014_-	ammonium transporter	NA	NA	NA	NA	NA
WP_002290686.1|1550354_1550597_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_002295944.1|1550628_1551186_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
WP_002295945.1|1551198_1551387_-	DUF2273 domain-containing protein	NA	NA	NA	NA	NA
WP_002295947.1|1551399_1551966_-	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA	NA
WP_002287525.1|1552400_1553549_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A288TXV8	Enterococcus_phage	93.4	1.2e-204
WP_002287522.1|1553565_1553970_-|transposase	IS200/IS605-like element ISEfa4 family transposase	transposase	A0A286QN76	Streptococcus_phage	73.8	1.3e-52
WP_002291299.1|1554273_1554447_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002295138.1|1555086_1555560_+	DUF2975 domain-containing protein	NA	NA	NA	NA	NA
WP_002295139.1|1555568_1555796_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002347126.1|1556229_1557765_-|transposase	IS1182-like element ISEfa7 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	48.2	3.3e-125
WP_002295142.1|1557988_1558360_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002291278.1|1558615_1558858_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_029485494.1|1558889_1559792_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
WP_002291274.1|1559804_1559993_-	DUF2273 domain-containing protein	NA	NA	NA	NA	NA
WP_002296677.1|1560006_1560570_-	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA	NA
WP_002300977.1|1560607_1561501_-	SDR family oxidoreductase	NA	A0A2N9QUX2	Trichoplusia_ni_ascovirus	46.0	5.2e-59
WP_002303839.1|1561578_1562502_-	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_002296672.1|1562550_1562901_-	iron-sulfur cluster biosynthesis family protein	NA	NA	NA	NA	NA
WP_002296671.1|1562933_1563836_-	glycosyltransferase family 8 protein	NA	NA	NA	NA	NA
WP_002296670.1|1563828_1564686_-	glycosyltransferase family 8 protein	NA	A0ZYL4	Archaeal_BJ1_virus	27.1	1.3e-19
WP_002296669.1|1565019_1565829_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_002296667.1|1565868_1566366_+	cysteine hydrolase	NA	NA	NA	NA	NA
WP_002321681.1|1567010_1567334_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296665.1|1567497_1567752_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296663.1|1567821_1568067_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002296662.1|1568142_1568508_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002303842.1|1568568_1569132_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002293303.1|1569699_1569900_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	77.3	3.9e-23
WP_002296658.1|1570295_1570445_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296656.1|1570651_1571365_-	HAD family phosphatase	NA	A0A1D8KPI1	Synechococcus_phage	23.0	5.4e-06
WP_002296654.1|1571357_1572443_-	mannonate dehydratase	NA	NA	NA	NA	NA
WP_002296653.1|1572459_1572903_-	PTS fructose transporter subunit IIA	NA	NA	NA	NA	NA
WP_002321678.1|1572936_1573290_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296650.1|1573401_1573803_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296648.1|1573839_1574349_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_002296647.1|1574370_1575228_-	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA	NA
WP_002296646.1|1575245_1576079_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_002296645.1|1576092_1576890_-	iron-containing alcohol dehydrogenase family protein	NA	NA	NA	NA	NA
WP_002321677.1|1576922_1577207_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_002296641.1|1577203_1578205_-	2-hydroxyacid dehydrogenase	NA	M1H9J0	Paramecium_bursaria_Chlorella_virus	29.0	2.8e-24
WP_002321675.1|1578206_1579274_-	decarboxylating 6-phosphogluconate dehydrogenase	NA	A0A1D8KGX1	Synechococcus_phage	35.3	3.9e-53
WP_002296639.1|1579272_1580121_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002296638.1|1580766_1580973_+	DUF3955 domain-containing protein	NA	NA	NA	NA	NA
WP_002296637.1|1581174_1582176_-	alpha/beta hydrolase	NA	M1PGN2	Moumouvirus	31.8	2.5e-09
WP_002311095.1|1582180_1584094_-	MucBP domain-containing protein	NA	NA	NA	NA	NA
WP_002296634.1|1584261_1584768_-	cysteine hydrolase	NA	NA	NA	NA	NA
WP_002296633.1|1584927_1585368_+	Spx/MgsR family RNA polymerase-binding regulatory protein	NA	NA	NA	NA	NA
WP_002296632.1|1585393_1586551_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002296631.1|1586553_1586910_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296629.1|1587207_1588182_-	LPXTG-anchored fibrinogen/nidogen-binding adhesin SgrA	NA	NA	NA	NA	NA
WP_002296628.1|1588377_1589217_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_002296627.1|1589401_1590289_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_002311093.1|1590882_1591578_-	fructose-6-phosphate aldolase	NA	E3SKN5	Synechococcus_phage	31.5	1.0e-22
WP_002296624.1|1591561_1591960_-	PTS glucitol/sorbitol transporter subunit IIA	NA	NA	NA	NA	NA
WP_002287107.1|1592368_1593619_+|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
>prophage 7
NZ_LT598663	Enterococcus faecium isolate Ef_aus00233 chromosome 1	2888087	1670296	1747151	2888087	protease,transposase,tRNA	Streptococcus_phage(12.5%)	59	NA	NA
WP_002288473.1|1670296_1671727_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_002317639.1|1671723_1673196_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_002288477.1|1673195_1673501_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_002323115.1|1673606_1675643_-	NAD-dependent DNA ligase LigA	NA	A0A289ZTZ3	Serratia_phage	37.1	4.8e-100
WP_002319708.1|1675659_1677894_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	40.1	9.5e-126
WP_002317636.1|1678048_1679608_+	ClC family H(+)/Cl(-) exchange transporter	NA	NA	NA	NA	NA
WP_002323114.1|1679718_1681650_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_002288484.1|1681667_1682582_-	1-phosphofructokinase	NA	NA	NA	NA	NA
WP_002323503.1|1682578_1683331_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA	NA
WP_002294422.1|1683489_1683699_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002288487.1|1683709_1685038_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002288488.1|1685173_1685329_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002288491.1|1685402_1685990_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_002294425.1|1686072_1687323_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	62.5	5.5e-147
WP_002292069.1|1687569_1688859_-	trigger factor	NA	NA	NA	NA	NA
WP_002323140.1|1689012_1689945_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002323141.1|1690101_1690761_-	RDD family protein	NA	NA	NA	NA	NA
WP_002323142.1|1690763_1691789_-	signal peptide peptidase SppA	NA	A0A2I6UH21	Salinibacter_virus	28.8	5.5e-20
WP_002323143.1|1691801_1692092_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002323144.1|1692501_1694307_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	38.8	7.5e-97
WP_002287824.1|1694378_1695734_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_002287822.1|1695757_1696927_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002287821.1|1696923_1697811_-	TIGR00159 family protein	NA	NA	NA	NA	NA
WP_060804945.1|1697999_1701680_-	pyruvate:ferredoxin (flavodoxin) oxidoreductase	NA	NA	NA	NA	NA
WP_002323146.1|1701877_1702399_+	DsbA family protein	NA	NA	NA	NA	NA
WP_002299629.1|1703841_1704498_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002289698.1|1705065_1706001_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	39.1	2.0e-53
WP_002306471.1|1706034_1707033_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	62.9	4.4e-115
WP_002289695.1|1707029_1707914_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	31.4	5.4e-08
WP_002294440.1|1708048_1708780_-	aspartate racemase	NA	NA	NA	NA	NA
WP_002294441.1|1708783_1710049_-	D-aspartate ligase	NA	NA	NA	NA	NA
WP_002322807.1|1710311_1713128_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	57.5	1.0e-311
WP_049143617.1|1713137_1715132_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_002296521.1|1715390_1716893_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_002292113.1|1716894_1717632_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	44.7	2.8e-34
WP_002289374.1|1717999_1719166_-	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	25.7	1.9e-24
WP_002292134.1|1719316_1721146_-	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	48.8	2.2e-136
WP_002296525.1|1721196_1721760_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_002294449.1|1721853_1722897_-	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA	NA
WP_002300945.1|1723131_1724298_-	oxygen-independent coproporphyrinogen III oxidase	NA	A0A0N7G7K6	Chrysochromulina_ericina_virus	33.6	5.0e-09
WP_002300943.1|1724313_1724541_-	adenosine deaminase	NA	NA	NA	NA	NA
WP_000997695.1|1727005_1728184_-|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
WP_002325764.1|1728379_1728541_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002294462.1|1729730_1730321_+	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_101699735.1|1730568_1731731_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	50.9	7.8e-79
WP_002325767.1|1731880_1732594_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002294465.1|1732708_1733719_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_002294466.1|1733755_1734238_-|tRNA	prolyl-tRNA editing protein	tRNA	NA	NA	NA	NA
WP_002294467.1|1734387_1734756_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_002294470.1|1735220_1735673_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002288523.1|1735796_1736648_-	sugar transporter	NA	NA	NA	NA	NA
WP_002294471.1|1736660_1737446_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_002294472.1|1737840_1738782_-	riboflavin biosynthesis protein RibF	NA	NA	NA	NA	NA
WP_002294474.1|1738785_1739709_-|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_002347402.1|1740136_1741090_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_002294145.1|1741145_1743509_-	phosphoketolase family protein	NA	NA	NA	NA	NA
WP_002296840.1|1743825_1745013_+|transposase	IS256-like element IS16 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	46.3	8.2e-92
WP_002294143.1|1745430_1745652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002297185.1|1745855_1747151_+|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	3.8e-10
>prophage 8
NZ_LT598663	Enterococcus faecium isolate Ef_aus00233 chromosome 1	2888087	1756977	1809502	2888087	protease,transposase,tRNA	unidentified_phage(14.29%)	53	NA	NA
WP_002347409.1|1756977_1758687_-|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_002294136.1|1758754_1760023_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_002294135.1|1760183_1760984_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_002294134.1|1760980_1761793_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	46.8	2.0e-25
WP_002293875.1|1761987_1762545_-	ribosome recycling factor	NA	NA	NA	NA	NA
WP_079504088.1|1762547_1763270_-	UMP kinase	NA	NA	NA	NA	NA
WP_002293878.1|1763405_1764287_-	elongation factor Ts	NA	NA	NA	NA	NA
WP_002293880.1|1764385_1765168_-	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_002293881.1|1765526_1766006_+	ArgR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002326249.1|1766222_1767314_+	2-aminoethylphosphonate--pyruvate transaminase	NA	NA	NA	NA	NA
WP_002293884.1|1767306_1768092_+	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_002293885.1|1768437_1770129_-|tRNA	arginine--tRNA ligase	tRNA	A0A2I2L3K1	Orpheovirus	32.8	9.9e-75
WP_002288434.1|1770550_1771498_-	carbamate kinase	NA	NA	NA	NA	NA
WP_002288437.1|1771612_1772632_-	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
WP_002288439.1|1772722_1773952_-	arginine deiminase	NA	NA	NA	NA	NA
WP_002288442.1|1774412_1775114_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_002293887.1|1775685_1776702_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	41.4	5.4e-60
WP_002293888.1|1776698_1777163_-	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA	NA
WP_002293890.1|1777169_1777712_-	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA	NA
WP_002302614.1|1777695_1778520_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
WP_002297185.1|1778682_1779978_+|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	3.8e-10
WP_002293893.1|1780130_1781111_-	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	28.9	5.8e-19
WP_002293895.1|1781134_1782619_-	UDP-glucose--hexose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
WP_002293897.1|1782630_1783620_-	UDP-glucose 4-epimerase GalE	NA	A0A1V0SG19	Hokovirus	36.8	1.6e-48
WP_002288457.1|1783867_1784035_+	DUF3042 family protein	NA	NA	NA	NA	NA
WP_002288458.1|1784096_1785908_-	FAD/NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_002288459.1|1785904_1786270_-	DUF488 family protein	NA	NA	NA	NA	NA
WP_002288461.1|1786432_1786828_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_002288462.1|1786845_1787808_-	ROK family glucokinase	NA	NA	NA	NA	NA
WP_002293902.1|1787807_1788020_-	YqgQ family protein	NA	NA	NA	NA	NA
WP_002289885.1|1788040_1788739_-|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
WP_002289886.1|1788758_1789301_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_002301321.1|1789432_1790437_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_002293904.1|1790433_1791423_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_002293905.1|1791419_1792226_-	ABC transporter ATP-binding protein	NA	A0A1V0SJ29	Klosneuvirus	32.1	1.0e-13
WP_079504089.1|1792391_1793348_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002296121.1|1793424_1793943_-	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	39.1	7.1e-24
WP_002296119.1|1794030_1794180_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_002288531.1|1794407_1794854_+	DUF2188 domain-containing protein	NA	NA	NA	NA	NA
WP_002288533.1|1795048_1796944_-	asparagine synthase (glutamine-hydrolyzing)	NA	F2Y2L7	Organic_Lake_phycodnavirus	26.2	6.0e-20
WP_002303934.1|1797268_1798243_-	choloylglycine hydrolase family protein	NA	M1H001	Paramecium_bursaria_Chlorella_virus	29.7	3.0e-23
WP_002296332.1|1798808_1799375_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002296334.1|1799630_1800962_+	DUF1576 domain-containing protein	NA	NA	NA	NA	NA
WP_002296335.1|1800927_1801278_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002297629.1|1801369_1801789_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_002296337.1|1801789_1802134_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_002301399.1|1802399_1803359_+|transposase	IS30 family transposase	transposase	H7BW61	unidentified_phage	26.8	2.2e-10
WP_002287776.1|1803548_1804145_+	TVP38/TMEM64 family protein	NA	M1Q152	Streptococcus_phage	41.7	8.7e-34
WP_002287775.1|1804268_1806068_+	glycerophosphoryl diester phosphodiesterase membrane domain-containing protein	NA	I6XE30	Staphylococcus_phage	26.5	5.3e-10
WP_002297633.1|1806345_1806558_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002293931.1|1807019_1807169_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002311774.1|1807421_1808381_-|transposase	IS30 family transposase	transposase	H7BW61	unidentified_phage	27.2	7.5e-11
WP_002326704.1|1808593_1809502_+|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_LT598663	Enterococcus faecium isolate Ef_aus00233 chromosome 1	2888087	1813168	1822984	2888087	tRNA	Streptococcus_phage(50.0%)	9	NA	NA
WP_002288576.1|1813168_1814422_+	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	55.3	7.7e-24
WP_002288577.1|1814492_1814978_-|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_002288579.1|1815000_1815759_-	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	36.4	1.9e-25
WP_002288581.1|1815774_1816953_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	48.9	3.9e-102
WP_002303943.1|1817182_1819303_+	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	58.0	8.2e-220
WP_002296838.1|1819525_1820251_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002288586.1|1820240_1820750_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002288588.1|1820819_1822268_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.3	1.7e-19
WP_002288590.1|1822267_1822984_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.7	1.0e-33
>prophage 10
NZ_LT598663	Enterococcus faecium isolate Ef_aus00233 chromosome 1	2888087	1896288	1960333	2888087	transposase,tRNA	Streptococcus_phage(33.33%)	55	NA	NA
WP_002297185.1|1896288_1897584_+|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	3.8e-10
WP_002288760.1|1898035_1899154_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002304680.1|1899624_1900932_+	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA	NA
WP_002340453.1|1901050_1902250_+	YdcF family protein	NA	NA	NA	NA	NA
WP_002289547.1|1902276_1903545_-	voltage-gated chloride channel family protein	NA	A0A1X9I5Z9	Streptococcus_phage	31.1	2.2e-42
WP_002291751.1|1904761_1905265_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_059355914.1|1905387_1906152_-	RNA methyltransferase	NA	A0A2D1A6G0	Rhodococcus_phage	26.1	1.7e-05
WP_079504091.1|1906259_1906535_+	acylphosphatase	NA	NA	NA	NA	NA
WP_002312285.1|1906972_1907923_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_002312284.1|1908101_1908302_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010782560.1|1909106_1910066_+|transposase	IS30-like element IS6770 family transposase	transposase	NA	NA	NA	NA
WP_002312282.1|1910931_1911462_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002312281.1|1911458_1912076_-	VanZ family protein	NA	NA	NA	NA	NA
WP_002312280.1|1912657_1912879_-	transferase	NA	NA	NA	NA	NA
WP_002348669.1|1913056_1914589_-	polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_002312276.1|1914724_1915810_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_002312275.1|1915824_1916544_-	glycosyl transferase	NA	A0A2K9L639	Tupanvirus	25.0	2.6e-08
WP_002312274.1|1916540_1917851_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002348666.1|1917877_1918468_-	poly-gamma-glutamate biosynthesis protein	NA	NA	NA	NA	NA
WP_002312270.1|1918785_1919847_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	36.5	1.5e-12
WP_002312264.1|1920414_1921482_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_002291721.1|1921501_1921981_-	EpsH	NA	NA	NA	NA	NA
WP_002325817.1|1921997_1922459_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002312259.1|1922472_1923723_-	nucleotide sugar dehydrogenase	NA	M1IB49	Acanthocystis_turfacea_Chlorella_virus	50.4	8.9e-105
WP_002312258.1|1924100_1925552_-	sugar transferase	NA	NA	NA	NA	NA
WP_002312256.1|1925872_1926637_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002348664.1|1926664_1927363_-	CpsD/CapB family tyrosine-protein kinase	NA	A0A1X9I5D6	Streptococcus_phage	37.1	6.0e-26
WP_002348663.1|1927374_1928154_-	tyrosine protein kinase	NA	NA	NA	NA	NA
WP_002296209.1|1928169_1929114_-	LCP family protein	NA	NA	NA	NA	NA
WP_002348662.1|1929159_1929939_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002348661.1|1930318_1932394_-|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_002305598.1|1932395_1933313_-|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_002348660.1|1933698_1934517_-	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_002288753.1|1934659_1935559_-	GTPase Era	NA	NA	NA	NA	NA
WP_002348659.1|1935573_1935969_-	diacylglycerol kinase family protein	NA	NA	NA	NA	NA
WP_002291700.1|1935952_1936429_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_079504092.1|1936457_1938650_-	HDIG domain-containing protein	NA	NA	NA	NA	NA
WP_002291698.1|1938673_1939645_-	PhoH family protein	NA	W8D063	Erwinia_phage	49.8	3.5e-48
WP_002288744.1|1940349_1941729_+	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA	NA
WP_002326809.1|1941912_1943208_+|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	5.0e-10
WP_002296623.1|1943465_1944761_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	37.5	3.9e-55
WP_002287318.1|1944915_1945362_-	GatB/YqeY domain-containing protein	NA	A0A292GL36	Xanthomonas_phage	39.5	5.3e-20
WP_002287321.1|1945388_1945565_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_002287322.1|1945726_1946155_-	transcriptional repressor	NA	NA	NA	NA	NA
WP_002304612.1|1946246_1947107_+	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_002321425.1|1947198_1947549_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002299465.1|1947563_1949291_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	63.7	1.5e-211
WP_002296150.1|1949504_1950431_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	52.4	5.0e-89
WP_002304608.1|1950575_1952009_-	6-phospho-beta-glucosidase	NA	NA	NA	NA	NA
WP_002289176.1|1952008_1953412_-	6-phospho-beta-glucosidase	NA	NA	NA	NA	NA
WP_002299460.1|1953642_1954545_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002330765.1|1954584_1956465_-	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_002299454.1|1956561_1957413_-	PRD domain-containing protein	NA	NA	NA	NA	NA
WP_002287525.1|1958763_1959912_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A288TXV8	Enterococcus_phage	93.4	1.2e-204
WP_002287522.1|1959928_1960333_-|transposase	IS200/IS605-like element ISEfa4 family transposase	transposase	A0A286QN76	Streptococcus_phage	73.8	1.3e-52
>prophage 11
NZ_LT598663	Enterococcus faecium isolate Ef_aus00233 chromosome 1	2888087	2340116	2386911	2888087	transposase,holin,tail,plate	Lactococcus_phage(33.33%)	50	NA	NA
WP_000195429.1|2340116_2341289_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_049142660.1|2341596_2342085_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_099097712.1|2342488_2342794_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049142659.1|2342975_2343407_-	DNA/RNA non-specific endonuclease	NA	NA	NA	NA	NA
WP_049142658.1|2343421_2343718_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049142657.1|2343794_2344214_-	single-stranded DNA-binding protein	NA	Q9AZV6	Lactococcus_phage	56.7	1.7e-36
WP_049142656.1|2344268_2344610_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049142678.1|2344681_2344948_-	hypothetical protein	NA	A0A1W6JN36	Lactococcus_phage	58.2	1.3e-18
WP_049142655.1|2345434_2346346_-	replication-relaxation family protein	NA	NA	NA	NA	NA
WP_049142654.1|2347288_2347711_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_053089540.1|2347700_2349875_-	DUF853 family protein	NA	NA	NA	NA	NA
WP_049142653.1|2349890_2352233_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049142652.1|2352254_2354798_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_049142651.1|2354807_2355206_-	hypothetical protein	NA	NA	NA	NA	NA
WP_053089539.1|2355286_2355571_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049142649.1|2355594_2356593_-	conjugal transfer protein	NA	NA	NA	NA	NA
WP_049142648.1|2356585_2356933_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049142647.1|2356948_2357599_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049142646.1|2357609_2358782_-	CHAP domain-containing protein	NA	Q4Z9E1	Staphylococcus_phage	44.7	1.8e-19
WP_049142645.1|2358800_2359673_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_049142644.1|2359694_2360615_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049142643.1|2360614_2360884_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049142642.1|2360880_2361261_-	DUF805 domain-containing protein	NA	NA	NA	NA	NA
WP_049142641.1|2361727_2363191_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A075BS18	Microcystis_phage	46.7	3.0e-19
WP_049142640.1|2363254_2366272_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_049142639.1|2366422_2367262_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_049142638.1|2367406_2367652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_049142637.1|2367714_2368137_+	hypothetical protein	NA	NA	NA	NA	NA
WP_049142636.1|2368230_2368548_-	hypothetical protein	NA	A0A0S2MYE8	Enterococcus_phage	45.7	4.5e-13
WP_049142635.1|2368574_2368781_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049142634.1|2368761_2368944_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049142633.1|2368957_2369308_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049142632.1|2369333_2369636_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049142631.1|2369638_2369872_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049142629.1|2371302_2372418_-	replication initiator protein A	NA	NA	NA	NA	NA
WP_049142628.1|2372423_2372822_-	replication initiator protein A	NA	NA	NA	NA	NA
WP_002347076.1|2373881_2374187_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002302753.1|2374963_2375974_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1G5SA77	Enterococcus_phage	66.1	2.8e-61
WP_002302751.1|2375970_2376390_-|holin	phage holin family protein	holin	F0PIJ6	Enterococcus_phage	67.9	6.5e-44
WP_002302750.1|2376459_2376600_-	XkdX family protein	NA	A0A2H4JD72	uncultured_Caudovirales_phage	54.8	1.1e-08
WP_002332774.1|2376592_2376940_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002347378.1|2376953_2377448_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002319918.1|2377447_2377897_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303306.1|2377900_2378521_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002347082.1|2378520_2379429_-|plate	phage baseplate upper protein	plate	A0A1P8BLW0	Lactococcus_phage	25.2	7.8e-10
WP_002347081.1|2379441_2382204_-|tail	phage tail protein	tail	Q9AZX5	Lactococcus_phage	39.1	6.0e-138
WP_002303299.1|2382200_2382941_-|tail	tail protein	tail	NA	NA	NA	NA
WP_002305859.1|2382930_2385720_-	tape measure protein	NA	D7RWD8	Brochothrix_phage	40.2	8.4e-71
WP_002303297.1|2385961_2386303_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303295.1|2386302_2386911_-|tail	tail protein	tail	NA	NA	NA	NA
>prophage 12
NZ_LT598663	Enterococcus faecium isolate Ef_aus00233 chromosome 1	2888087	2390614	2430208	2888087	portal,bacteriocin,capsid,transposase,integrase,terminase	Enterococcus_phage(33.33%)	47	2398036:2398053	2419507:2419524
WP_002305852.1|2390614_2391667_-|capsid	minor capsid protein	capsid	NA	NA	NA	NA
WP_002303292.1|2391584_2393114_-|portal	phage portal protein	portal	A0A0S2MVB2	Bacillus_phage	25.0	1.3e-28
WP_002298064.1|2393125_2394541_-	hypothetical protein	NA	C9E2I7	Enterococcus_phage	79.7	1.0e-218
WP_002303291.1|2394533_2395367_-|terminase	small subunit of terminase	terminase	D2IYW0	Enterococcus_phage	68.8	1.5e-79
WP_002298069.1|2395755_2395929_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303289.1|2395971_2396232_-	hypothetical protein	NA	A0A0S2MYE7	Enterococcus_phage	51.1	7.9e-16
WP_002304479.1|2396852_2397266_-	autolysin	NA	C9E2P5	Enterococcus_phage	81.0	1.1e-56
WP_012197617.1|2397752_2398040_-	hypothetical protein	NA	NA	NA	NA	NA
2398036:2398053	attL	TTCATTCTTTTTCCTCCC	NA	NA	NA	NA
WP_012197619.1|2398036_2398240_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020944994.1|2398169_2398439_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012197625.1|2398435_2398966_-	DUF1642 domain-containing protein	NA	A0A059T7S4	Listeria_phage	37.2	1.8e-11
WP_020944995.1|2398958_2399273_-	MazG nucleotide pyrophosphohydrolase	NA	D2IZY1	Enterococcus_phage	73.7	1.6e-34
WP_002304472.1|2399411_2400227_-	prohibitin family protein	NA	A0A288TXV9	Enterococcus_phage	69.4	1.8e-82
WP_042959744.1|2400223_2400550_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002323911.1|2400546_2400708_-	antitoxin	NA	NA	NA	NA	NA
WP_002329414.1|2400704_2401022_-	VRR-NUC domain-containing protein	NA	A0A1P8VVL5	Streptococcus_phage	61.0	7.6e-29
WP_002347054.1|2401336_2403673_-	phage/plasmid primase P4 family domain-containing protein	NA	Q9T0Y1	Lactobacillus_phage	50.7	4.2e-225
WP_002347055.1|2403672_2404179_-	DUF669 domain-containing protein	NA	A8ATF2	Listeria_phage	46.4	6.0e-36
WP_010729410.1|2404196_2405720_-	DEAD/DEAH box helicase	NA	Q9T0Y3	Lactobacillus_phage	48.1	6.1e-108
WP_002347057.1|2405691_2406432_-	AAA family ATPase	NA	A0A1X9I651	Streptococcus_phage	54.8	6.9e-65
WP_002347058.1|2406452_2406932_-	siphovirus Gp157 family protein	NA	E5DV79	Deep-sea_thermophilic_phage	49.0	3.1e-34
WP_002350675.1|2406864_2407182_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002347059.1|2407241_2407418_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002347060.1|2407393_2407645_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002323901.1|2407658_2407850_-	hypothetical protein	NA	Q9T1I7	Lactobacillus_phage	35.5	1.4e-06
WP_002347061.1|2408142_2408463_+	helix-turn-helix transcriptional regulator	NA	A0A182BQC8	Lactococcus_phage	49.1	1.2e-18
WP_002347063.1|2408480_2408903_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_002329429.1|2408985_2409621_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	52.6	5.1e-32
WP_002347064.1|2409738_2410950_+|integrase	site-specific integrase	integrase	A0A0B5CTW8	Listeria_phage	30.6	1.4e-35
WP_000222572.1|2411300_2412254_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_002321654.1|2412250_2412397_-|bacteriocin	EntF family bacteriocin induction factor	bacteriocin	NA	NA	NA	NA
WP_002287810.1|2412500_2412812_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_002304799.1|2412813_2413011_-	enterocin	NA	NA	NA	NA	NA
WP_002287807.1|2413404_2415132_-	ABC transporter permease/substrate binding protein	NA	NA	NA	NA	NA
WP_002287805.1|2415124_2416318_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.0	1.2e-29
WP_002287801.1|2416504_2417149_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002290587.1|2417242_2417377_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002287799.1|2417378_2419511_-	ferrous iron transport protein B	NA	NA	NA	NA	NA
WP_002287797.1|2419507_2419981_-	ferrous iron transport protein A	NA	NA	NA	NA	NA
2419507:2419524	attR	TTCATTCTTTTTCCTCCC	NA	NA	NA	NA
WP_002287795.1|2420381_2420606_+	glutaredoxin-like protein NrdH	NA	A0A0M7REK7	Lactobacillus_phage	42.7	1.7e-11
WP_002287793.1|2420764_2422924_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	63.2	3.8e-265
WP_002287792.1|2422973_2423939_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	70.4	3.4e-128
WP_002287791.1|2424027_2425167_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_002287788.1|2425475_2426189_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	43.7	6.5e-20
WP_002287787.1|2426442_2427144_-	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
WP_002290558.1|2427377_2428910_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	28.0	3.3e-45
WP_002295743.1|2429299_2430208_-|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_LT598663	Enterococcus faecium isolate Ef_aus00233 chromosome 1	2888087	2580289	2610104	2888087	transposase,holin,tRNA	Bacillus_phage(25.0%)	22	NA	NA
WP_002285932.1|2580289_2580469_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_104674935.1|2580662_2580833_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_016252731.1|2581256_2582276_-	collagen binding domain-containing protein	NA	NA	NA	NA	NA
WP_002285924.1|2582422_2585494_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303189.1|2587400_2588162_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002344993.1|2588261_2589983_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.0	1.3e-37
WP_002304835.1|2589997_2591782_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.2	2.1e-46
WP_002285917.1|2592162_2593716_-	glycosyl hydrolase	NA	NA	NA	NA	NA
WP_002285916.1|2594063_2596478_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	72.8	0.0e+00
WP_002301403.1|2596904_2598923_-	LysM peptidoglycan-binding domain-containing protein	NA	Q9ZXE4	Bacillus_phage	39.6	5.8e-13
WP_002285911.1|2599292_2599949_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_002285909.1|2599948_2600905_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	57.4	3.3e-43
WP_002285906.1|2600904_2601471_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	42.8	2.2e-34
WP_002299614.1|2601906_2602137_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296840.1|2602329_2603517_-|transposase	IS256-like element IS16 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	46.3	8.2e-92
WP_025479400.1|2603613_2603916_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002297218.1|2604227_2605523_-|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
WP_002303477.1|2606212_2607232_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1G5SA77	Enterococcus_phage	66.1	2.4e-60
WP_002301818.1|2607242_2607449_-|holin	holin	holin	NA	NA	NA	NA
WP_002301399.1|2607581_2608541_-|transposase	IS30 family transposase	transposase	H7BW61	unidentified_phage	26.8	2.2e-10
WP_002304713.1|2608743_2609676_+	DUF4041 domain-containing protein	NA	M1NRY5	Streptococcus_phage	53.8	1.8e-57
WP_002341521.1|2609747_2610104_+	hypothetical protein	NA	U4KJ82	Streptococcus_phage	42.2	9.2e-15
>prophage 14
NZ_LT598663	Enterococcus faecium isolate Ef_aus00233 chromosome 1	2888087	2753634	2764037	2888087		Streptococcus_phage(90.0%)	15	NA	NA
WP_002297366.1|2753634_2753949_+	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	53.4	1.0e-25
WP_002297365.1|2753961_2754336_+	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	66.1	2.4e-34
WP_002297364.1|2754345_2754681_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002321809.1|2754763_2756104_+	DUF87 domain-containing protein	NA	A0A1S5SFB5	Streptococcus_phage	65.4	2.4e-164
WP_002297358.1|2756181_2756856_+	zeta toxin family protein	NA	NA	NA	NA	NA
WP_002297357.1|2756848_2757013_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002321810.1|2757088_2757523_+	DNA (cytosine-5-)-methyltransferase	NA	A0A1S5SDW2	Streptococcus_phage	77.1	6.5e-63
WP_002297356.1|2757523_2758231_+	DNA cytosine methyltransferase	NA	A0A1S5SEK0	Streptococcus_phage	50.4	5.8e-53
WP_002297354.1|2758220_2758511_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002297353.1|2758769_2759954_+	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	61.6	2.9e-142
WP_002317225.1|2759950_2760088_+	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
WP_002286940.1|2760833_2762744_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	29.8	7.1e-37
WP_033658092.1|2762847_2763072_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	83.8	1.2e-23
WP_002297350.1|2763084_2763588_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	59.9	9.2e-53
WP_002297349.1|2763647_2764037_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	68.3	3.9e-43
>prophage 1
NZ_LT598664	Enterococcus faecium isolate Ef_aus00233 plasmid 2	197153	8287	69179	197153	integrase,transposase	Streptococcus_phage(40.0%)	54	NA	NA
WP_002298232.1|8287_9580_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	38.9	3.2e-57
WP_002323279.1|10335_11508_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	99.6	2.5e-133
WP_002292150.1|12062_12635_+	DNA starvation/stationary phase protection protein	NA	A0A0A7RTZ1	Clostridium_phage	42.6	3.9e-23
WP_002292156.1|12779_13484_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_002300938.1|13711_14050_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002322689.1|14034_14889_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
WP_002301447.1|15035_15269_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_002330545.1|15466_17371_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	35.3	2.2e-99
WP_002330544.1|17724_18090_+	helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	43.9	1.1e-15
WP_002330543.1|18106_18718_+	CadD family cadmium resistance transporter	NA	NA	NA	NA	NA
WP_010726486.1|18745_20407_+	HAD-IC family P-type ATPase	NA	E4ZFI9	Streptococcus_phage	34.6	1.8e-60
WP_002330541.1|20434_21115_+|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	93.4	2.6e-119
WP_079504102.1|21913_22822_+|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
WP_002316138.1|22877_23375_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_079504103.1|23371_24106_-	hypothetical protein	NA	NA	NA	NA	NA
WP_079504104.1|24480_25659_+|transposase	IS256-like element ISEf1 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	25.3	1.5e-29
WP_002301108.1|26194_26749_+|integrase	tyrosine-type recombinase/integrase	integrase	W8CYP1	Bacillus_phage	46.1	8.6e-36
WP_079504102.1|27424_28333_+|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
WP_106913783.1|29485_30648_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.2	9.2e-80
WP_002298088.1|30922_31465_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002330699.1|31620_32070_+	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_102829665.1|32099_33262_-|transposase	IS3-like element ISEfa8 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.2	1.8e-80
WP_002301194.1|33511_34789_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_002298083.1|34798_35455_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.1	1.3e-22
WP_002301195.1|35454_36831_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_002340465.1|37116_38739_-|transposase	IS1182 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	47.5	2.7e-122
WP_079504105.1|39390_40362_+	radical SAM protein	NA	NA	NA	NA	NA
WP_002322470.1|40439_40676_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_077828694.1|40644_40776_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_002330694.1|40851_41235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002302270.1|41267_42053_-	histidinol phosphate phosphatase	NA	NA	NA	NA	NA
WP_002302268.1|42230_43331_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_002302267.1|43320_44145_+	alkaline phosphatase family protein	NA	NA	NA	NA	NA
WP_002330693.1|44141_44957_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_002313180.1|44953_45784_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_002302261.1|45790_46822_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.6	1.8e-26
WP_002302256.1|48478_48688_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002348630.1|48737_49454_+	aminotransferase class V-fold PLP-dependent enzyme	NA	Q2XUY6	environmental_halophage	50.0	4.5e-45
WP_002285815.1|50163_50817_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	33.2	4.0e-24
WP_002300494.1|50813_52133_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_002325565.1|52234_52915_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.1	1.3e-126
WP_002304891.1|53196_53592_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001224538.1|53916_54534_+	recombinase family protein	NA	Q1MVP4	Enterobacteria_phage	33.1	5.1e-13
WP_000366408.1|54574_54874_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000824191.1|54907_55075_+	hypothetical protein	NA	NA	NA	NA	NA
WP_079504106.1|55119_55725_-	recombinase family protein	NA	A0A219YA40	Aeromonas_phage	33.2	2.1e-19
WP_002319817.1|55984_56665_-|transposase	IS6-like element ISS1N family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	84.1	2.5e-109
WP_002303113.1|57209_57761_+	DUF334 domain-containing protein	NA	NA	NA	NA	NA
WP_002303111.1|58760_59273_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_002303110.1|59269_60307_+|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	28.5	7.1e-07
WP_000195429.1|62137_63310_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_001015311.1|63939_64620_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	1.5e-127
WP_002297218.1|65322_66618_+|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	29.1	1.0e-42
WP_002301317.1|67631_69179_-|transposase	IS66 family transposase	transposase	S5VTD3	Leptospira_phage	28.9	1.7e-44
>prophage 2
NZ_LT598664	Enterococcus faecium isolate Ef_aus00233 plasmid 2	197153	74157	126061	197153	integrase,transposase,holin,bacteriocin	Paenibacillus_phage(21.43%)	48	70083:70101	120537:120555
70083:70101	attL	ATTTACACAAAATATTTTA	NA	NA	NA	NA
WP_073120200.1|74157_74454_-|transposase	IS3 family transposase	transposase	A0A0C5AEB1	Paenibacillus_phage	59.2	6.7e-19
WP_002346943.1|74805_75984_-|transposase	IS256-like element ISEf1 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	25.3	4.0e-30
WP_002313174.1|76234_76495_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002301811.1|76768_78061_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	41.0	6.1e-32
WP_086953915.1|78481_79820_+|transposase	IS3-like element ISEnfa3 family transposase	transposase	A0A1B1P773	Bacillus_phage	52.7	2.6e-78
WP_086956687.1|80048_81210_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.6e-79
WP_002301131.1|81981_82716_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002301130.1|82731_83901_+	SIS domain-containing protein	NA	NA	NA	NA	NA
WP_002301128.1|83916_84912_+	tagatose-bisphosphate aldolase	NA	NA	NA	NA	NA
WP_002298736.1|84990_85917_+	PEP phosphonomutase	NA	NA	NA	NA	NA
WP_002301126.1|85935_87186_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_000222572.1|87316_88270_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.8	3.7e-34
WP_002301591.1|88377_89463_-	tyrosine recombinase XerS	NA	NA	NA	NA	NA
WP_002287870.1|91538_92057_-	ClbS/DfsB family four-helix bundle protein	NA	NA	NA	NA	NA
WP_086956687.1|93174_94336_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.6e-79
WP_002300328.1|94834_95311_-	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_002289252.1|95323_96826_-	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_002289253.1|96839_97529_-	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA	NA
WP_002289254.1|97689_98508_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002289255.1|98737_98968_+	resolvase	NA	NA	NA	NA	NA
WP_002301718.1|99553_100009_-|transposase	IS200/IS605 family transposase	transposase	I4AZI8	Saccharomonospora_phage	31.6	1.3e-13
WP_086953894.1|100251_101677_+|transposase	IS3-like element ISEfa10 family transposase	transposase	A0A1B1P773	Bacillus_phage	40.2	2.3e-48
WP_002302077.1|101847_102810_-	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	25.8	2.3e-20
WP_002293868.1|104434_106381_+	PTS beta-glucoside transporter subunit IIBCA	NA	NA	NA	NA	NA
WP_002292418.1|106644_107517_+	ROK family protein	NA	NA	NA	NA	NA
WP_002322465.1|108532_109132_-	bacteriophage abortive infection AbiH family protein	NA	NA	NA	NA	NA
WP_002301839.1|109195_109795_-|integrase	tyrosine-type recombinase/integrase	integrase	D2XR58	Bacillus_phage	36.1	1.3e-29
WP_002300846.1|110748_110931_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002305884.1|110914_111100_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
WP_002300843.1|111342_112863_+|transposase	IS66 family transposase	transposase	S5VTD3	Leptospira_phage	31.6	1.1e-48
WP_002300842.1|113049_113622_-	SIS domain-containing protein	NA	NA	NA	NA	NA
WP_002300841.1|113628_114291_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_002300840.1|114306_114822_-	YjbQ family protein	NA	NA	NA	NA	NA
WP_002300838.1|114823_115108_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_002300836.1|115141_116470_-	PTS galactitol transporter subunit IIC	NA	NA	NA	NA	NA
WP_002300835.1|116483_116939_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_002300833.1|116941_118888_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_079504104.1|119276_120455_-|transposase	IS256-like element ISEf1 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	25.3	1.5e-29
WP_002300807.1|120826_121090_-|bacteriocin	circular bacteriocin, circularin A/uberolysin family	bacteriocin	NA	NA	NA	NA
120537:120555	attR	ATTTACACAAAATATTTTA	NA	NA	NA	NA
WP_079504107.1|121210_122164_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.8	4.8e-34
WP_002311569.1|123132_123489_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002300804.1|123547_123727_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002300801.1|124171_124444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002300799.1|124453_124609_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002300797.1|124624_124876_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002305810.1|124875_125082_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002305809.1|125524_125749_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002295624.1|125938_126061_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
>prophage 1
NZ_LT598666	Enterococcus faecium isolate Ef_aus00233 plasmid 4	77977	34981	73286	77977	transposase	Streptococcus_phage(40.0%)	36	NA	NA
WP_002297404.1|34981_36232_-|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
WP_002305801.1|36641_39014_+	hypothetical protein	NA	B5SP25	Lactococcus_phage	29.7	3.4e-12
WP_060810895.1|39074_40535_+	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_079504117.1|40545_42750_+	type IA DNA topoisomerase	NA	A0A1X9I6W8	Streptococcus_phage	50.7	1.4e-116
WP_002326517.1|42765_42915_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014401508.1|42995_43592_+	type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein	NA	NA	NA	NA	NA
WP_014401509.1|43604_44504_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA	NA
WP_014401510.1|44506_44992_+	single-stranded DNA-binding protein	NA	Q938M7	Temperate_phage	60.5	1.3e-43
WP_002296240.1|45357_45618_+	hypothetical protein	NA	A0A0S2MYI8	Enterococcus_phage	51.4	3.4e-11
WP_002296239.1|46064_46271_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020944759.1|46270_46495_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020944760.1|46509_46947_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020944761.1|46939_47647_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002295613.1|48027_48207_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002332741.1|48299_48485_+	type II toxin-antitoxin system HicA family toxin	NA	F0PIL1	Enterococcus_phage	90.2	1.2e-26
WP_002305052.1|48518_48950_+	type II toxin-antitoxin system HicB family antitoxin	NA	F0PIL2	Enterococcus_phage	64.9	4.3e-43
WP_002323715.1|49886_51161_+	MFS transporter	NA	NA	NA	NA	NA
WP_002332665.1|51214_52642_+	sucrose-6-phosphate hydrolase	NA	S6ATV4	Bacillus_phage	26.7	9.0e-29
WP_020944763.1|52654_53527_+	ROK family protein	NA	NA	NA	NA	NA
WP_002332663.1|53621_54617_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_002287525.1|56051_57200_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A288TXV8	Enterococcus_phage	93.4	1.2e-204
WP_002287522.1|57216_57621_-|transposase	IS200/IS605-like element ISEfa4 family transposase	transposase	A0A286QN76	Streptococcus_phage	73.8	1.3e-52
WP_002326016.1|58743_59916_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	99.6	2.2e-134
WP_000393259.1|59972_60365_+	GNAT family N-acetyltransferase	NA	A0A0N7GFH7	Staphylococcus_phage	100.0	6.9e-72
WP_001028144.1|60365_61805_+	aminoglycoside O-phosphotransferase APH(2'')-Ia	NA	A0A1X9I6C2	Streptococcus_phage	100.0	3.8e-285
WP_000202380.1|62048_63368_-|transposase	IS1380-like element IS1678 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	82.7	4.8e-210
WP_002332661.1|64061_64592_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296623.1|64783_66079_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	37.5	3.9e-55
WP_002297218.1|66319_67615_-|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	29.1	1.0e-42
WP_002285758.1|67877_68072_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002287659.1|68061_68415_+	IS66 family insertion sequence element accessory protein TnpB	NA	S5VXZ8	Leptospira_phage	38.7	5.7e-17
WP_002296127.1|68516_70064_+|transposase	IS66 family transposase	transposase	S5VTD3	Leptospira_phage	28.9	1.7e-44
WP_002288787.1|70891_71314_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002299573.1|71323_71527_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002299575.1|71737_72322_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.7	5.9e-43
WP_079504120.1|72605_73286_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	98.2	2.5e-125
