assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900092475.1_Ef_aus00233	NZ_LT598665	Enterococcus faecium isolate Ef_aus00233 plasmid 3	1	2630-2860	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	c2c10_CAS-V-U3	c2c10_CAS-V-U3	Type V-U3	ATTTGAGAAACATGCTGTTTTATATGGTTCTAAAAC,ATGCTGTTTTATATGGTTCTAAA,ACAATTTGAGAAACATGCTGTTTTATATGGTTCTAAAAC	36,23,39	2	4	2729-2758|2729-2758|2729-2755|2729-2755	NZ_LT598664.1_164278-164307|NZ_LT598666.1_6738-6709|NZ_LT598664.1_164278-164304|NZ_LT598666.1_6738-6712	NA:NA:NA	3,3,2	3	TypeV-U3	cas14j,cas3,RT,DEDDh,cas2,DinG,csa3,c2c10_CAS-V-U3	NA|116aa|up_1|NZ_LT598665.1_800_1148_-,c2c10_CAS-V-U3|390aa|down_0|NZ_LT598665.1_2970_4140_-,NA|107aa|down_3|NZ_LT598665.1_8359_8680_-,NA|373aa|down_4|NZ_LT598665.1_8712_9831_-,NA|264aa|down_5|NZ_LT598665.1_9859_10651_-,NA|324aa|down_6|NZ_LT598665.1_10660_11632_-,NA|86aa|down_7|NZ_LT598665.1_11746_12004_-,NA|77aa|down_8|NZ_LT598665.1_12006_12237_-	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|162aa|up_2|NZ_LT598665.1_0_486_-	pfam18144, SMODS, Second Messenger Oligonucleotide or Dinucleotide Synthetase domain	NA|116aa|up_1|NZ_LT598665.1_800_1148_-	NA	NA|442aa|up_0|NZ_LT598665.1_1140_2466_-	cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Polymerase V	c2c10_CAS-V-U3|390aa|down_0|NZ_LT598665.1_2970_4140_-	NA	NA|545aa|down_1|NZ_LT598665.1_4168_5803_-	pfam07926, TPR_MLP1_2, TPR/MLP1/MLP2-like protein	NA|381aa|down_2|NZ_LT598665.1_6725_7867_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|107aa|down_3|NZ_LT598665.1_8359_8680_-	NA	NA|373aa|down_4|NZ_LT598665.1_8712_9831_-	NA	NA|264aa|down_5|NZ_LT598665.1_9859_10651_-	NA	NA|324aa|down_6|NZ_LT598665.1_10660_11632_-	NA	NA|86aa|down_7|NZ_LT598665.1_11746_12004_-	NA	NA|77aa|down_8|NZ_LT598665.1_12006_12237_-	NA	NA|348aa|down_9|NZ_LT598665.1_12412_13456_-	pfam13529, Peptidase_C39_2, Peptidase_C39 like family
GCF_900092475.1_Ef_aus00233	NZ_LT598663	Enterococcus faecium isolate Ef_aus00233 chromosome 1	1	2433225-2433334	1	CRISPRCasFinder	no		cas14j,cas3,RT,DEDDh,cas2,DinG,csa3	Orphan	CTTTGCTCAACCAGTATTATTCATCA	26	0	0	NA	NA	NA	1	1	Orphan	cas14j,cas3,RT,DEDDh,cas2,DinG,csa3,c2c10_CAS-V-U3	NA,NA	NA|322aa|up_9|NZ_LT598663.1_2422973_2423939_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|380aa|up_8|NZ_LT598663.1_2424027_2425167_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|238aa|up_7|NZ_LT598663.1_2425475_2426189_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|234aa|up_6|NZ_LT598663.1_2426442_2427144_-	cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium	NA|511aa|up_5|NZ_LT598663.1_2427377_2428910_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|303aa|up_4|NZ_LT598663.1_2429299_2430208_-	pfam13612, DDE_Tnp_1_3, Transposase DDE domain	NA|350aa|up_3|NZ_LT598663.1_2430301_2431351_-	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|230aa|up_2|NZ_LT598663.1_2431432_2432122_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|123aa|up_1|NZ_LT598663.1_2432227_2432596_-	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed	NA|168aa|up_0|NZ_LT598663.1_2432648_2433152_-	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed	NA|230aa|down_0|NZ_LT598663.1_2433561_2434251_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|141aa|down_1|NZ_LT598663.1_2434354_2434777_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|223aa|down_2|NZ_LT598663.1_2435119_2435788_+	COG1760, SdaA, L-serine deaminase [Amino acid transport and metabolism]	NA|291aa|down_3|NZ_LT598663.1_2435800_2436673_+	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|340aa|down_4|NZ_LT598663.1_2436763_2437783_-	cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN-binding domain	NA|302aa|down_5|NZ_LT598663.1_2437955_2438861_-	pfam06028, DUF915, Alpha/beta hydrolase of unknown function (DUF915)	NA|182aa|down_6|NZ_LT598663.1_2438919_2439465_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|57aa|down_7|NZ_LT598663.1_2439565_2439736_-	pfam00584, SecE, SecE/Sec61-gamma subunits of protein translocation complex	NA|51aa|down_8|NZ_LT598663.1_2439759_2439912_-	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|215aa|down_9|NZ_LT598663.1_2440073_2440718_+	cd02205, CBS_pair_SF, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily
GCF_900092475.1_Ef_aus00233	NZ_LT598664	Enterococcus faecium isolate Ef_aus00233 plasmid 2	1	168197-168325	1	CRISPRCasFinder	no	RT	csa3,RT	Unclear	GGTATGATTTTCATACCCTCTTGA	24	0	0	NA	NA	NA	2	2	Orphan	cas14j,cas3,RT,DEDDh,cas2,DinG,csa3,c2c10_CAS-V-U3	NA|87aa|up_8|NZ_LT598664.1_160319_160580_-,NA|252aa|up_7|NZ_LT598664.1_160592_161348_-,NA|65aa|up_3|NZ_LT598664.1_164914_165109_-,NA|80aa|up_2|NZ_LT598664.1_165220_165460_-,NA|111aa|up_0|NZ_LT598664.1_166533_166866_-,NA	NA|697aa|up_9|NZ_LT598664.1_158232_160323_-	pfam17998, AgI_II_C2, Cell surface antigen I/II C2 terminal domain	NA|87aa|up_8|NZ_LT598664.1_160319_160580_-	NA	NA|252aa|up_7|NZ_LT598664.1_160592_161348_-	NA	NA|251aa|up_6|NZ_LT598664.1_161363_162116_-	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|659aa|up_5|NZ_LT598664.1_162128_164105_-	pfam16569, GramPos_pilinBB, Gram-positive pilin backbone subunit 2, Cna-B-like domain	NA|224aa|up_4|NZ_LT598664.1_164157_164829_-	cd06165, Sortase_A, Sortase domain found in class A sortases	NA|65aa|up_3|NZ_LT598664.1_164914_165109_-	NA	NA|80aa|up_2|NZ_LT598664.1_165220_165460_-	NA	NA|114aa|up_1|NZ_LT598664.1_165573_165915_-	pfam17400, DUF5406, Family of unknown function (DUF5406)	NA|111aa|up_0|NZ_LT598664.1_166533_166866_-	NA	NA|85aa|down_0|NZ_LT598664.1_171043_171298_+	TIGR02609, hypothetical_protein_XAC1195, putative addiction module antidote	NA|106aa|down_1|NZ_LT598664.1_171298_171616_+	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE	NA|139aa|down_2|NZ_LT598664.1_174391_174808_+	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|157aa|down_3|NZ_LT598664.1_174804_175275_+	pfam03830, PTSIIB_sorb, PTS system sorbose subfamily IIB component	NA|258aa|down_4|NZ_LT598664.1_175288_176062_+	pfam03609, EII-Sor, PTS system sorbose-specific iic component	NA|271aa|down_5|NZ_LT598664.1_176075_176888_+	pfam03613, EIID-AGA, PTS system mannose/fructose/sorbose family IID component	NA|322aa|down_6|NZ_LT598664.1_176941_177907_+	COG2222, AgaS, Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]	NA|908aa|down_7|NZ_LT598664.1_178022_180746_+	COG3933, COG3933, Transcriptional antiterminator [Transcription]	NA|211aa|down_8|NZ_LT598664.1_180758_181391_+	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only]	NA|276aa|down_9|NZ_LT598664.1_182289_183117_+	pfam05043, Mga, Mga helix-turn-helix domain
