The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT596221	Yersinia pseudotuberculosis isolate NZYP4713 chromosome 1	4724276	483524	542446	4724276	holin,protease,tail	uncultured_Mediterranean_phage(18.18%)	55	NA	NA
WP_002210082.1|483524_484970_+|protease	metalloprotease TldD	protease	NA	NA	NA	NA
WP_011193162.1|485170_488029_-	RHS repeat protein	NA	NA	NA	NA	NA
WP_012414059.1|488288_488648_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011193160.1|488644_489046_-	M15 family metallopeptidase	NA	A0A249XWK9	Proteus_phage	61.0	2.8e-36
WP_002214300.1|489058_489361_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_012414058.1|489500_493952_-	toxin	NA	NA	NA	NA	NA
WP_012414057.1|494008_497587_-|tail	phage tail tape measure protein	tail	NA	NA	NA	NA
WP_012414056.1|497627_500120_-	toxin	NA	NA	NA	NA	NA
WP_041175576.1|500355_501222_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012414054.1|501482_502394_-	HTH-type transcriptional activator AaeR	NA	NA	NA	NA	NA
WP_002210093.1|502696_502900_+	AaeX family protein	NA	NA	NA	NA	NA
WP_002210094.1|502907_503843_+	p-hydroxybenzoic acid efflux pump subunit AaeA	NA	NA	NA	NA	NA
WP_002210095.1|503844_505800_+	p-hydroxybenzoic acid efflux pump subunit AaeB	NA	NA	NA	NA	NA
WP_012414053.1|506066_507536_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_002214288.1|507730_508204_+	ribonuclease Ba	NA	NA	NA	NA	NA
WP_002210098.1|508208_508490_+	ribonuclease inhibitor	NA	NA	NA	NA	NA
WP_011193153.1|508601_509150_-	ribosome-associated protein	NA	NA	NA	NA	NA
WP_011193152.1|509330_510671_+|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
WP_011055205.1|510794_511439_+	hypothetical protein	NA	A0A1B0VBK8	Salmonella_phage	49.0	3.4e-52
WP_002210102.1|511646_512033_+	cytochrome b562	NA	NA	NA	NA	NA
WP_002210103.1|512274_512685_-	nucleoside diphosphate kinase regulator	NA	NA	NA	NA	NA
WP_002210104.1|513037_514705_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA	NA
WP_011193151.1|514799_516215_-	PTS trehalose transporter subunit IIBC	NA	NA	NA	NA	NA
WP_002210106.1|516625_517579_-	HTH-type transcriptional regulator TreR	NA	NA	NA	NA	NA
WP_002210107.1|517812_518289_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011193150.1|518587_518974_-	2-iminobutanoate/2-iminopropanoate deaminase	NA	NA	NA	NA	NA
WP_012104412.1|519111_519576_-	aspartate carbamoyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_011193148.1|519587_520523_-	aspartate carbamoyltransferase	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	38.5	2.0e-48
WP_002210112.1|520861_521134_-	PTS phosphocarrier protein NPr	NA	NA	NA	NA	NA
WP_002210113.1|521130_521985_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	30.0	3.2e-05
WP_002213952.1|522290_522773_-	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA	NA
WP_004392031.1|522891_523179_-	ribosome hibernation promoting factor	NA	NA	NA	NA	NA
WP_002210115.1|523202_524636_-	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_002210116.1|524697_525423_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.4	1.4e-22
WP_002210117.1|525429_525975_-	lipopolysaccharide ABC transporter substrate-binding protein LptA	NA	NA	NA	NA	NA
WP_011193147.1|525958_526522_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_002228203.1|526518_527082_-	3-deoxy-manno-octulosonate-8-phosphatase KdsC	NA	A0A140XBD6	Dickeya_phage	83.0	9.6e-59
WP_002210119.1|527495_528482_-	arabinose-5-phosphate isomerase KdsD	NA	A0A2P0VNK5	Tetraselmis_virus	30.8	6.0e-40
WP_002210120.1|528592_529567_-	calcium/sodium antiporter	NA	NA	NA	NA	NA
WP_002210121.1|529831_530650_+	phospholipid ABC transporter ATP-binding protein MlaF	NA	G3M9Y6	Bacillus_virus	31.7	2.2e-19
WP_002210122.1|530867_531650_+	lipid asymmetry maintenance ABC transporter permease subunit MlaE	NA	NA	NA	NA	NA
WP_012414052.1|531654_532212_+	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA	NA
WP_002210124.1|532224_532848_+	phospholipid-binding protein MlaC	NA	NA	NA	NA	NA
WP_002210125.1|532883_533186_+	lipid asymmetry maintenance protein MlaB	NA	NA	NA	NA	NA
WP_012104414.1|533332_533587_+	BolA family iron metabolism protein IbaG	NA	NA	NA	NA	NA
WP_002210127.1|533740_535003_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_002210128.1|535183_536272_-	outer membrane-stress sensor serine endopeptidase DegS	NA	A0A1B1IRD3	uncultured_Mediterranean_phage	31.8	2.1e-09
WP_002218066.1|536361_537735_-|protease	serine endoprotease DegQ	protease	A0A1B1IT49	uncultured_Mediterranean_phage	28.2	7.4e-20
WP_002210130.1|538005_538410_-	DUF1043 family protein	NA	NA	NA	NA	NA
WP_002210131.1|538633_539761_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_002210132.1|540074_540503_+	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_002210133.1|540517_540910_+	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_002230558.1|540906_541104_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002210135.1|541283_541925_+	stringent starvation protein A	NA	NA	NA	NA	NA
WP_002216203.1|541930_542446_+|protease	ClpXP protease specificity-enhancing factor	protease	A0A1S5R3H3	Pseudomonas_phage	55.6	3.6e-28
>prophage 2
NZ_LT596221	Yersinia pseudotuberculosis isolate NZYP4713 chromosome 1	4724276	655079	692230	4724276	lysis,integrase,portal,terminase,tRNA,plate,capsid,holin,head,tail	Erwinia_phage(51.28%)	46	655925:655973	686420:686468
WP_011193102.1|655079_655682_+|terminase	terminase small subunit	terminase	A0A2R3UAN5	Myoviridae_environmental_samples	49.2	1.8e-39
655925:655973	attL	ATTTGGTGGCCCCTACTGGACTTGAACCAGTGACCAAGCGATTATGAGT	NA	NA	NA	NA
WP_038830094.1|656055_657078_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A218M4I3	Erwinia_phage	77.1	1.1e-156
WP_038830093.1|657077_657668_-	phage repressor protein CI	NA	A0A218M4J1	Erwinia_phage	62.8	2.0e-67
WP_038830091.1|657797_658058_+	hypothetical protein	NA	A0A218M4I5	Erwinia_phage	68.8	3.5e-24
WP_038830090.1|658088_658598_+	phage regulatory CII family protein	NA	A0A1S6L008	Salmonella_phage	50.6	3.0e-43
WP_038830089.1|658607_658793_+	DUF2724 domain-containing protein	NA	NA	NA	NA	NA
WP_033853530.1|658804_659116_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038830087.1|659181_659454_+	DUF2732 family protein	NA	NA	NA	NA	NA
WP_038830085.1|659465_659729_+	DUF5405 family protein	NA	A0A218M4I8	Erwinia_phage	45.0	1.7e-13
WP_038830084.1|659725_662005_+	replication endonuclease	NA	Q858T4	Yersinia_virus	56.5	1.9e-238
WP_038830083.1|662027_662387_+	hypothetical protein	NA	H9C172	Pectobacterium_phage	42.5	1.8e-18
WP_038830082.1|663092_664358_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_050882018.1|664359_665070_+	RloB domain-containing protein	NA	NA	NA	NA	NA
WP_033853718.1|665317_665536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011192224.1|665597_666635_-|portal	phage portal protein	portal	F1BUR7	Erwinia_phage	78.4	1.8e-159
WP_011192223.1|666631_667396_-|terminase	terminase	terminase	O80303	Escherichia_phage	46.6	2.1e-56
WP_011192222.1|667392_669165_-|terminase	terminase ATPase subunit family protein	terminase	F1BUR2	Erwinia_phage	81.0	2.9e-287
WP_038830080.1|669313_670168_+|capsid	GPO family capsid scaffolding protein	capsid	Q01088	Escherichia_phage	60.7	1.1e-90
WP_038830079.1|670244_671483_+|capsid	phage major capsid protein, P2 family	capsid	F1BUQ8	Erwinia_phage	74.9	3.2e-147
WP_011192219.1|671486_672146_+|terminase	terminase endonuclease subunit	terminase	F1BUQ7	Erwinia_phage	69.9	7.2e-82
WP_038830078.1|672245_672719_+|head	head completion/stabilization protein	head	M1SNN6	Escherichia_phage	58.1	2.6e-41
WP_011192217.1|672718_672922_+|tail	tail protein X	tail	E5G6M9	Salmonella_phage	64.2	3.5e-19
WP_038830077.1|672924_673134_+	hypothetical protein	NA	A0A218M4L5	Erwinia_phage	44.9	1.7e-08
WP_050882007.1|673117_673624_+	lysozyme	NA	A0A218M4K3	Erwinia_phage	63.5	5.2e-56
WP_011192214.1|673625_674042_+|lysis	LysB family phage lysis regulatory protein	lysis	F1BUQ1	Erwinia_phage	49.6	8.7e-25
WP_071880004.1|674001_674199_+|holin	holin	holin	F1BUQ0	Erwinia_phage	59.3	4.0e-12
WP_011192213.1|674137_674593_+|tail	phage tail protein	tail	F1BUP9	Erwinia_phage	63.3	4.0e-47
WP_050882010.1|674589_675039_+	phage virion morphogenesis protein	NA	O80313	Escherichia_phage	63.1	5.7e-46
WP_011192211.1|675112_675754_+|plate	phage baseplate assembly protein V	plate	A0A0M4S6F6	Salmonella_phage	61.0	2.4e-69
WP_038830070.1|675750_676101_+	GPW/gp25 family protein	NA	F1BUP4	Erwinia_phage	68.1	1.2e-38
WP_011192209.1|676105_677014_+|plate	baseplate assembly protein	plate	F1BUP3	Erwinia_phage	79.5	1.9e-125
WP_011192208.1|677006_677615_+|tail	phage tail protein I	tail	F1BUP2	Erwinia_phage	78.6	3.9e-90
WP_075272403.1|677611_679051_+|tail	phage tail protein	tail	F1BUP1	Erwinia_phage	79.4	1.2e-76
WP_011192206.1|679062_679545_+|tail	tail fiber assembly protein	tail	F1BUP0	Erwinia_phage	41.3	1.5e-28
WP_011192205.1|679672_680842_+|tail	phage tail sheath protein	tail	F1BUU3	Erwinia_phage	80.2	2.1e-185
WP_011192204.1|680855_681371_+|tail	phage major tail tube protein	tail	S4TNZ0	Salmonella_phage	73.1	2.3e-67
WP_011192203.1|681421_681733_+|tail	phage tail assembly protein	tail	F1BUU0	Erwinia_phage	60.9	2.9e-25
WP_011192202.1|681765_681888_+|tail	GpE family phage tail protein	tail	Q858U8	Yersinia_virus	68.4	7.4e-09
WP_057534176.1|681880_684307_+|tail	phage tail tape measure protein	tail	Q7Y4C8	Escherichia_virus	44.7	6.4e-160
WP_011192200.1|684306_684792_+|tail	phage tail protein	tail	S4TUC3	Salmonella_phage	60.4	1.5e-47
WP_050882014.1|684788_685952_+	phage late control D family protein	NA	A0A0M5M5V5	Salmonella_phage	66.4	1.3e-145
WP_033853692.1|686058_686277_+	DNA-binding transcriptional regulator	NA	Q37973	Salmonella_virus	70.8	1.2e-25
WP_002210359.1|686694_688533_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.3	1.9e-34
686420:686468	attR	ATTTGGTGGCCCCTACTGGACTTGAACCAGTGACCAAGCGATTATGAGT	NA	NA	NA	NA
WP_002210358.1|688690_690439_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	38.2	8.7e-74
WP_001144069.1|690574_690790_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_002212201.1|691216_692230_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	57.7	6.5e-106
>prophage 3
NZ_LT596221	Yersinia pseudotuberculosis isolate NZYP4713 chromosome 1	4724276	2480178	2531332	4724276	lysis,integrase,head,transposase,portal,capsid,holin,plate,tail	Salmonella_phage(41.18%)	61	2470083:2470098	2527006:2527021
2470083:2470098	attL	CACCACCGCCGCGCTG	NA	NA	NA	NA
WP_032467055.1|2480178_2480433_+|plate	phage baseplate assembly protein V	plate	F1BUP5	Erwinia_phage	61.1	3.1e-17
WP_002213212.1|2480429_2480729_+	GPW/gp25 family protein	NA	A0A218M4K8	Erwinia_phage	64.9	2.6e-23
WP_057534155.1|2480745_2481033_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011192343.1|2484761_2485319_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_011192342.1|2485293_2486460_-	diaminopimelate decarboxylase	NA	NA	NA	NA	NA
WP_012413697.1|2486456_2487254_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_011192340.1|2487253_2488108_-	YqcI/YcgG family protein	NA	NA	NA	NA	NA
WP_011192339.1|2488095_2488821_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_011192338.1|2488810_2490544_-	ThiF family adenylyltransferase	NA	NA	NA	NA	NA
WP_012413696.1|2490540_2491809_-	MFS transporter	NA	NA	NA	NA	NA
WP_086025313.1|2492765_2494278_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_011192335.1|2494498_2494843_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
WP_075272418.1|2494868_2495084_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002213223.1|2495113_2495296_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012413693.1|2495487_2495661_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002215401.1|2496420_2496648_-	replicative DNA helicase	NA	A0A192Y673	Salmonella_phage	57.7	2.1e-12
WP_012413690.1|2497206_2497431_+|integrase	integrase	integrase	K7PLZ2	Enterobacterial_phage	76.8	6.6e-19
WP_011192331.1|2498744_2499125_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011192329.1|2499633_2501331_-	DUF4041 domain-containing protein	NA	A0A142LP25	Marinitoga_camini_virus	62.5	9.0e-76
WP_011192328.1|2501351_2501720_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JFL3	uncultured_Caudovirales_phage	39.8	5.2e-13
WP_012304171.1|2501780_2501972_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011192327.1|2501984_2502188_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024063347.1|2502199_2502406_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011192326.1|2502402_2502717_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012304175.1|2502701_2502848_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011192325.1|2502858_2503119_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012304177.1|2503149_2503455_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011192323.1|2503537_2504305_+	hypothetical protein	NA	K7ZRM8	Xanthomonas_citri_phage	49.3	1.9e-09
WP_011192322.1|2504361_2505015_+	3'-5' exonuclease	NA	A0A1D9C9N8	Salinivibrio_phage	62.9	3.0e-56
WP_011192321.1|2505011_2505830_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1S6L011	Salmonella_phage	55.9	1.5e-76
WP_011192320.1|2505918_2508474_+	replication endonuclease	NA	E5G6L9	Salmonella_phage	37.9	8.9e-128
WP_012413686.1|2508454_2508685_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011192319.1|2508681_2509026_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041175454.1|2509707_2510748_-|portal	phage portal protein	portal	A0A077K9Q8	Ralstonia_phage	64.3	7.8e-131
WP_011192317.1|2510747_2512511_-	oxidoreductase	NA	A0A1S6KZW3	Salmonella_phage	63.6	3.1e-228
WP_011192316.1|2512681_2513497_+|capsid	GPO family capsid scaffolding protein	capsid	E5G6M5	Salmonella_phage	71.1	9.6e-76
WP_011192315.1|2513533_2514589_+|capsid	phage major capsid protein, P2 family	capsid	E5G6M6	Salmonella_phage	62.8	2.1e-123
WP_011192314.1|2514595_2515249_+	hypothetical protein	NA	F1BUQ7	Erwinia_phage	46.8	1.7e-43
WP_011192313.1|2515482_2515974_+|head	head completion/stabilization protein	head	A0A1S5NNA6	Burkholderia_phage	48.4	7.9e-33
WP_011192312.1|2515973_2516177_+|tail	tail protein X	tail	E5G6M9	Salmonella_phage	70.1	1.8e-23
WP_072187550.1|2516206_2516593_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_011192310.1|2516579_2516975_+	M15 family metallopeptidase	NA	A9DET4	Yersinia_phage	71.8	3.5e-47
WP_011192309.1|2516979_2517405_+|lysis	LysB family phage lysis regulatory protein	lysis	E5G6N2	Salmonella_phage	48.2	9.2e-22
WP_024063356.1|2517364_2517517_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011192308.1|2517503_2517971_+|tail	phage tail protein	tail	F1BUP9	Erwinia_phage	57.2	1.8e-42
WP_011192307.1|2517967_2518414_+	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	50.7	7.7e-35
WP_042592999.1|2518745_2519441_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011192305.1|2519771_2520407_+|plate	phage baseplate assembly protein V	plate	O80314	Escherichia_phage	62.0	1.3e-64
WP_011192304.1|2520403_2520757_+	GPW/gp25 family protein	NA	A0A218M4K8	Erwinia_phage	59.3	2.4e-31
WP_011192303.1|2520759_2521668_+|plate	baseplate assembly protein	plate	F1BUP3	Erwinia_phage	73.2	1.3e-118
WP_011192302.1|2521660_2522269_+|tail	phage tail protein I	tail	F1BUP2	Erwinia_phage	75.0	1.7e-85
WP_011192301.1|2522265_2523705_+|tail	phage tail protein	tail	F1BUP1	Erwinia_phage	77.8	3.8e-75
WP_011192300.1|2523716_2524196_+|tail	tail fiber assembly protein	tail	F1BUP0	Erwinia_phage	41.9	1.2e-28
WP_011192299.1|2524329_2525505_+|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	79.8	1.3e-179
WP_011192298.1|2525516_2526032_+|tail	phage major tail tube protein	tail	A0A218M4J0	Erwinia_phage	66.3	2.5e-61
WP_011192297.1|2526085_2526433_+|tail	phage tail assembly protein	tail	E5G6P9	Salmonella_phage	51.6	8.6e-18
WP_071819140.1|2526447_2526567_+|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_012413671.1|2526559_2529475_+|tail	phage tail tape measure protein	tail	Q9ZXK0	Pseudomonas_virus	52.8	2.6e-155
2527006:2527021	attR	CACCACCGCCGCGCTG	NA	NA	NA	NA
WP_012413670.1|2529486_2529951_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	56.2	1.2e-43
WP_011192293.1|2529947_2531042_+	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	65.7	1.9e-127
WP_012105206.1|2531116_2531332_+	ogr/Delta-like zinc finger family protein	NA	S4TNZ3	Salmonella_phage	60.6	1.1e-18
>prophage 4
NZ_LT596221	Yersinia pseudotuberculosis isolate NZYP4713 chromosome 1	4724276	2823804	2890459	4724276	transposase,plate,protease	uncultured_Caudovirales_phage(25.0%)	55	NA	NA
WP_011192093.1|2823804_2824257_-|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_012105342.1|2824256_2824838_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_012413626.1|2824812_2825898_-|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_011192091.1|2825861_2827625_-|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_002211939.1|2827845_2828301_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011192090.1|2828315_2829374_-	PAAR domain-containing protein	NA	NA	NA	NA	NA
WP_011192089.1|2829391_2830993_-	type VI secretion system protein TssA	NA	NA	NA	NA	NA
WP_011192088.1|2831036_2834459_-	type VI secretion system membrane subunit	NA	NA	NA	NA	NA
WP_012413625.1|2834455_2835688_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011192086.1|2836467_2836980_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011192085.1|2836984_2838733_-	TIGR02594 family protein	NA	A0A1U9ZAE8	Proteus_phage	29.0	9.8e-09
WP_011192084.1|2838741_2839158_-	DUF4431 domain-containing protein	NA	NA	NA	NA	NA
WP_012413624.1|2839160_2841863_-	type VI secretion system tip protein VgrG	NA	A0A2H4JCD4	uncultured_Caudovirales_phage	32.5	5.2e-17
WP_032467135.1|2842178_2842574_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011192081.1|2842577_2843849_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075272421.1|2843966_2846465_-	type VI secretion system tip protein VgrG	NA	A0A2H4JCD4	uncultured_Caudovirales_phage	32.5	2.8e-17
WP_011192079.1|2846461_2849110_-	type VI secretion system ATPase TssH	NA	K4FB40	Cronobacter_phage	31.2	1.9e-93
WP_002210014.1|2849497_2849989_-	Hcp family type VI secretion system effector	NA	NA	NA	NA	NA
WP_012413620.1|2849992_2851738_-	OmpA family protein	NA	NA	NA	NA	NA
WP_011192078.1|2851737_2852424_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA	NA
WP_011192077.1|2852420_2853773_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_075272422.1|2853784_2855335_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_002211662.1|2855377_2855878_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_002213016.1|2856840_2857689_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_002213017.1|2857787_2858036_-	acyl carrier protein	NA	NA	NA	NA	NA
WP_002228570.1|2858073_2858514_-	lipocalin-like domain-containing protein	NA	NA	NA	NA	NA
WP_002213024.1|2858600_2859389_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_002213025.1|2859391_2860144_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_002213026.1|2860145_2860865_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_002213028.1|2860857_2862096_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_012105362.1|2862111_2862849_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_011192074.1|2862850_2864134_-	beta-ketoacyl-[acyl-carrier-protein] synthase family protein	NA	NA	NA	NA	NA
WP_002213034.1|2864123_2864648_-	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA	NA
WP_002213036.1|2864911_2865130_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002213038.1|2865860_2866607_+	SDR family oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	31.4	3.3e-14
WP_011192073.1|2866760_2869178_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002213046.1|2872501_2872831_+	sulfurtransferase TusE	NA	NA	NA	NA	NA
WP_002213049.1|2872882_2873161_-	acylphosphatase	NA	NA	NA	NA	NA
WP_057534233.1|2873254_2874445_+	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	W6LLI2	Streptococcus_phage	28.1	2.1e-26
WP_002213054.1|2874505_2874823_+	heat shock protein HspQ	NA	NA	NA	NA	NA
WP_002213056.1|2874931_2875348_-	CoA-binding protein	NA	NA	NA	NA	NA
WP_002213058.1|2875663_2876344_+	DUF2057 family protein	NA	NA	NA	NA	NA
WP_002213060.1|2876522_2876987_+	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_011192072.1|2877047_2879102_-	DNA helicase IV	NA	A7KV33	Bacillus_phage	25.8	5.7e-16
WP_011192071.1|2879295_2879742_+	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_011192070.1|2879771_2881910_+	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_012413616.1|2882011_2882647_-	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA	NA
WP_002213065.1|2882875_2883382_+	cell division inhibitor SulA	NA	NA	NA	NA	NA
WP_002213066.1|2883739_2884801_+	porin OmpA	NA	NA	NA	NA	NA
WP_002226586.1|2884906_2885362_-	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
WP_002224683.1|2885572_2887324_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_002220006.1|2887392_2887911_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
WP_002211286.1|2888176_2888365_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012413615.1|2888610_2889885_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_012413614.1|2890000_2890459_-|transposase	IS200/IS605-like element IS1541B family transposase	transposase	I4AZI8	Saccharomonospora_phage	30.7	2.1e-11
>prophage 5
NZ_LT596221	Yersinia pseudotuberculosis isolate NZYP4713 chromosome 1	4724276	3094910	3115955	4724276	plate,tail	Pseudomonas_phage(20.0%)	23	NA	NA
WP_002208845.1|3094910_3095690_-|tail	tail fiber protein	tail	Q9MCR6	Enterobacteria_phage	52.4	7.1e-52
WP_011192006.1|3095786_3096389_-	YmfQ family protein	NA	A0A2P9JZK7	Alteromonadaceae_phage	38.6	2.0e-33
WP_012413588.1|3096385_3097522_-|plate	baseplate J/gp47 family protein	plate	B5TK75	Pseudomonas_phage	30.3	6.5e-30
WP_002208848.1|3097525_3097981_-	phage GP46 family protein	NA	A0A0C4UR04	Shigella_phage	43.8	4.3e-17
WP_002215460.1|3097977_3098574_-|plate	phage baseplate assembly protein	plate	NA	NA	NA	NA
WP_024063685.1|3098589_3099645_-	hypothetical protein	NA	M1PVV2	Vibrio_phage	27.2	7.9e-38
WP_002208852.1|3099641_3101048_-	DNA circularization protein	NA	Q8SBG8	Shigella_phage	33.7	2.1e-17
WP_012413586.1|3101314_3102808_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002208854.1|3102928_3103228_-|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_002208855.1|3103229_3103598_-|tail	phage tail tube protein	tail	NA	NA	NA	NA
WP_002208856.1|3103619_3105128_-|tail	phage tail sheath subtilisin-like domain-containing protein	tail	B5TK67	Pseudomonas_phage	44.2	2.4e-104
WP_002208857.1|3105124_3105319_-	DUF2635 domain-containing protein	NA	B5TK66	Pseudomonas_phage	60.4	3.5e-08
WP_002208858.1|3105323_3105941_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_011192001.1|3105986_3106277_-	hypothetical protein	NA	H6WRZ3	Salmonella_phage	46.3	7.7e-12
WP_002208860.1|3106872_3107667_-	hydroxypyruvate isomerase family protein	NA	NA	NA	NA	NA
WP_002208861.1|3107642_3108455_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA	NA
WP_032466639.1|3108457_3109129_-	aldolase	NA	A0A077SK32	Escherichia_phage	54.9	1.3e-57
WP_012304340.1|3109185_3110490_-	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	46.2	2.6e-91
WP_002215470.1|3110700_3111180_-	antitermination protein Q	NA	S5M7R9	Escherichia_phage	61.0	2.3e-37
WP_002208864.1|3111453_3112176_+	LexA family transcriptional regulator	NA	F1C599	Cronobacter_phage	51.9	2.2e-63
WP_002208866.1|3112381_3112624_+	DinI family protein	NA	K7PKR6	Enterobacteria_phage	65.0	6.9e-22
WP_012413585.1|3112795_3113731_+	omptin family outer membrane beta-barrel protein YcoA	NA	NA	NA	NA	NA
WP_002208868.1|3114167_3115955_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	63.5	4.0e-10
>prophage 6
NZ_LT596221	Yersinia pseudotuberculosis isolate NZYP4713 chromosome 1	4724276	3543347	3623567	4724276	transposase,portal,coat,terminase,protease,holin	Salmonella_phage(27.66%)	87	NA	NA
WP_002216043.1|3543347_3543653_+|holin	phage holin family protein	holin	A0A286N2Q5	Klebsiella_phage	46.2	2.0e-10
WP_002208705.1|3543849_3545454_+	lytic polysaccharide monooxygenase	NA	Q9J8B0	Spodoptera_exigua_multiple_nucleopolyhedrovirus	31.0	2.3e-20
WP_002216044.1|3545913_3546825_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012413508.1|3548699_3550160_+	beta-Ala-His dipeptidase	NA	NA	NA	NA	NA
WP_011191844.1|3550273_3551332_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_011191843.1|3551687_3552635_+	glycerophosphoryl diester phosphodiesterase	NA	NA	NA	NA	NA
WP_002214684.1|3552879_3553107_-	(Na+)-NQR maturation NqrM	NA	NA	NA	NA	NA
WP_002227821.1|3553119_3554142_-	FAD:protein FMN transferase	NA	NA	NA	NA	NA
WP_011191842.1|3554182_3555406_-	NADH:ubiquinone reductase (Na(+)-transporting) subunit F	NA	NA	NA	NA	NA
WP_002208713.1|3555421_3556018_-	NADH:ubiquinone reductase (Na(+)-transporting) subunit E	NA	NA	NA	NA	NA
WP_002208714.1|3556024_3556654_-	NADH:ubiquinone reductase (Na(+)-transporting) subunit D	NA	NA	NA	NA	NA
WP_011191841.1|3556646_3557447_-	Na(+)-translocating NADH-quinone reductase subunit C	NA	NA	NA	NA	NA
WP_002208716.1|3557436_3558678_-	NADH:ubiquinone reductase (Na(+)-transporting) subunit B	NA	NA	NA	NA	NA
WP_002208717.1|3558681_3560025_-	Na(+)-translocating NADH-quinone reductase subunit A	NA	NA	NA	NA	NA
WP_011191840.1|3560520_3561261_+	murein L,D-transpeptidase	NA	NA	NA	NA	NA
WP_002208719.1|3561225_3561999_-	class II glutamine amidotransferase	NA	NA	NA	NA	NA
WP_002208720.1|3562201_3562783_-	D-sedoheptulose 7-phosphate isomerase	NA	A0A067XQR2	Caulobacter_phage	30.8	3.7e-13
WP_011191839.1|3563022_3565470_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_002208721.1|3565641_3566388_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_012413505.1|3566389_3568243_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011191837.1|3568397_3574568_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_011191836.1|3574608_3576399_-	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA	NA
WP_071525551.1|3577101_3577203_-	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
WP_011191835.1|3577601_3578825_-	S-methyl-5-thioribose kinase	NA	NA	NA	NA	NA
WP_011191834.1|3579020_3580061_+	S-methyl-5-thioribose-1-phosphate isomerase	NA	NA	NA	NA	NA
WP_011191833.1|3580093_3580636_-	acireductone dioxygenase	NA	NA	NA	NA	NA
WP_011191832.1|3580734_3581424_-	acireductone synthase	NA	NA	NA	NA	NA
WP_011191831.1|3581420_3582089_-	methylthioribulose 1-phosphate dehydratase	NA	NA	NA	NA	NA
WP_038400318.1|3584364_3584616_+	Arc family DNA-binding protein	NA	E7C9U8	Salmonella_phage	64.6	2.3e-20
WP_123767273.1|3584599_3585280_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050102056.1|3585298_3587164_-	hypothetical protein	NA	E7C9U6	Salmonella_phage	62.2	1.7e-197
WP_038400322.1|3587163_3588600_-	phage DNA ejection protein	NA	A0A2H4FND5	Salmonella_phage	43.8	1.8e-85
WP_050102055.1|3588599_3589250_-	hypothetical protein	NA	A0A2H4FUQ9	Salmonella_phage	48.2	1.2e-39
WP_050102054.1|3589243_3589705_-	DUF2824 family protein	NA	Q2A0B3	Sodalis_phage	70.5	2.7e-59
WP_050102053.1|3589720_3590422_-	hypothetical protein	NA	C6ZR14	Salmonella_phage	59.4	4.0e-38
WP_057534136.1|3590421_3591837_-	hypothetical protein	NA	Q9AYZ4	Salmonella_phage	72.5	1.7e-205
WP_050102051.1|3591808_3592306_-	recombinase RmuC	NA	G8EYJ2	Enterobacteria_phage	57.1	2.3e-40
WP_075272426.1|3592289_3592532_-	hypothetical protein	NA	A0A2D1GLK1	Escherichia_phage	77.6	4.6e-18
WP_050102049.1|3592572_3593856_-|coat	coat protein	coat	A0A2D1GLV2	Escherichia_phage	68.5	3.6e-170
WP_050102048.1|3593855_3594764_-	scaffolding protein	NA	A0A0M3ULI9	Salmonella_phage	75.2	3.5e-119
WP_050102047.1|3594777_3596943_-|portal	portal protein	portal	A0A2D1GLJ6	Escherichia_phage	69.1	2.2e-289
WP_080985231.1|3596942_3598493_-|terminase	terminase	terminase	G8EYI8	Enterobacteria_phage	83.9	3.2e-269
WP_050102045.1|3598422_3598905_-	DNA-packaging protein	NA	I6S1J2	Salmonella_phage	88.9	1.2e-73
WP_050102044.1|3598910_3599285_-	hypothetical protein	NA	C6ZR72	Salmonella_phage	69.4	3.9e-48
WP_057534137.1|3599375_3599744_-	hypothetical protein	NA	Q716B1	Shigella_phage	66.7	1.5e-36
WP_057534138.1|3599888_3600281_-	hypothetical protein	NA	B6SD18	Bacteriophage	35.3	1.0e-06
WP_042592784.1|3600265_3600748_-	lysozyme	NA	A0A2H4JCH1	uncultured_Caudovirales_phage	67.9	3.3e-60
WP_042592894.1|3600728_3600926_-|holin	holin	holin	B6SD15	Bacteriophage	61.0	3.2e-17
WP_050105304.1|3601446_3602253_-	antitermination protein	NA	M9NZB0	Enterobacteria_phage	53.3	1.8e-74
WP_057534139.1|3602249_3602444_-	protein ninH	NA	A5VW84	Enterobacteria_phage	61.3	1.7e-10
WP_057532406.1|3602440_3603034_-	recombination protein NinG	NA	A0A2R2Z332	Escherichia_phage	44.1	2.6e-38
WP_057534140.1|3603348_3603690_-	hypothetical protein	NA	K7P7P8	Enterobacteria_phage	43.8	2.6e-14
WP_075272427.1|3603803_3604169_-	DUF2591 family protein	NA	J9Q7S7	Salmonella_phage	38.3	8.0e-14
WP_001297096.1|3604344_3605124_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	4.5e-139
WP_012413427.1|3605123_3606146_-|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	99.7	7.0e-201
WP_050102143.1|3606353_3606797_-	hypothetical protein	NA	K7P7B8	Enterobacteria_phage	62.3	1.9e-46
WP_057534215.1|3606956_3607397_-	DUF551 domain-containing protein	NA	S4TSR6	Salmonella_phage	34.9	6.2e-05
WP_057534217.1|3607575_3607944_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050102137.1|3607943_3608633_-	DNA replication protein	NA	A0A077KCC8	Edwardsiella_phage	56.2	1.6e-63
WP_057532431.1|3608629_3609562_-	replication protein	NA	A0A1I9LJP3	Stx_converting_phage	68.8	1.8e-54
WP_057534218.1|3609621_3610350_-	hypothetical protein	NA	Q71T76	Escherichia_phage	48.8	1.2e-56
WP_050296274.1|3610374_3610668_-	hypothetical protein	NA	A2SY75	Escherichia_phage	63.9	6.1e-25
WP_042562436.1|3610779_3610974_-	Cro/Cl family transcriptional regulator	NA	K7PLQ6	Enterobacteria_phage	85.5	4.2e-22
WP_057534219.1|3611078_3611801_+	LexA family transcriptional regulator	NA	A0A2R2X2B0	Escherichia_phage	55.5	8.0e-66
WP_057534220.1|3611890_3612655_+	KilA-N domain-containing protein	NA	A0A1L2BWW1	Bacteriophage	46.3	1.1e-09
WP_048901720.1|3612992_3613517_+	hypothetical protein	NA	A0A0N7BTU4	Escherichia_phage	37.7	1.1e-24
WP_057534221.1|3613913_3614123_-	DUF2767 family protein	NA	NA	NA	NA	NA
WP_057534222.1|3614586_3614880_+	hypothetical protein	NA	NA	NA	NA	NA
WP_057534223.1|3614908_3615739_+	hypothetical protein	NA	M9NYX5	Enterobacteria_phage	55.1	1.2e-78
WP_048901725.1|3615787_3616087_+	hypothetical protein	NA	M9P0E2	Enterobacteria_phage	69.1	3.8e-30
WP_050105321.1|3616265_3616505_+	hypothetical protein	NA	NA	NA	NA	NA
WP_057534224.1|3616508_3616769_+	hypothetical protein	NA	NA	NA	NA	NA
WP_106464406.1|3616858_3616987_+|protease	protease FtsH-inhibitory lysogeny factor CIII	protease	NA	NA	NA	NA
WP_075272428.1|3617090_3617402_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050102197.1|3617401_3618220_+	PD-(D/E)XK nuclease-like domain-containing protein	NA	A0A0M5M5Y6	Salmonella_phage	68.1	5.2e-106
WP_050102195.1|3618219_3618810_+	hypothetical protein	NA	A0A0M4RD07	Salmonella_phage	62.9	2.8e-61
WP_072187572.1|3618817_3619000_+	DUF1317 family protein	NA	NA	NA	NA	NA
WP_057534225.1|3619043_3619469_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050102193.1|3619470_3619707_+	hypothetical protein	NA	NA	NA	NA	NA
WP_057534226.1|3619703_3620408_+	hypothetical protein	NA	A0A077SLK5	Escherichia_phage	54.9	3.2e-11
WP_057534227.1|3620407_3620656_+	hypothetical protein	NA	NA	NA	NA	NA
WP_057534228.1|3620659_3620872_+	hypothetical protein	NA	A0A0U4JX53	Pseudomonas_phage	50.7	2.6e-09
WP_050102188.1|3620861_3621128_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164712624.1|3621358_3621535_+	hypothetical protein	NA	NA	NA	NA	NA
WP_048901708.1|3621534_3621738_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038400326.1|3622011_3622263_+	excisionase family protein	NA	A0A286S2A4	Klebsiella_phage	50.0	5.8e-16
WP_050102102.1|3622295_3623567_+	DUF3596 domain-containing protein	NA	Q8W658	Enterobacteria_phage	53.4	1.7e-127
>prophage 7
NZ_LT596221	Yersinia pseudotuberculosis isolate NZYP4713 chromosome 1	4724276	3641343	3712681	4724276	integrase,head,transposase,portal,terminase,tRNA,capsid,holin,plate,tail	Cronobacter_phage(57.14%)	66	3638329:3638346	3695995:3696012
3638329:3638346	attL	AAATAATTCGAGTTGCAG	NA	NA	NA	NA
WP_002208747.1|3641343_3642510_-|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
WP_002216643.1|3642761_3643199_+	thioredoxin TrxC	NA	A0A1J0GW78	Streptomyces_phage	36.6	2.6e-11
WP_002208749.1|3643368_3644118_+	DTW domain-containing protein	NA	NA	NA	NA	NA
WP_012304535.1|3644160_3646803_+	bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002208751.1|3646978_3648334_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_002208752.1|3648395_3648737_+	YfiM family lipoprotein	NA	NA	NA	NA	NA
WP_002217405.1|3654846_3657420_-	ATP-dependent chaperone ClpB	NA	H6X3M6	Enterobacteria_phage	34.9	2.4e-128
WP_011191814.1|3657549_3658281_-	polyphenol oxidase	NA	NA	NA	NA	NA
WP_002231132.1|3658282_3659260_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA	NA
WP_002209469.1|3659395_3660127_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_012413503.1|3660481_3660844_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_012414005.1|3661140_3661338_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012414006.1|3661513_3663169_-	hypothetical protein	NA	F1BUJ7	Cronobacter_phage	52.8	1.1e-166
WP_012303700.1|3663165_3663714_-	hypothetical protein	NA	F1BUJ9	Cronobacter_phage	63.7	6.3e-55
WP_012414007.1|3663679_3664411_-	hypothetical protein	NA	F1BUK1	Cronobacter_phage	39.6	9.9e-40
WP_049772382.1|3664400_3664808_-|tail	tail assembly chaperone	tail	NA	NA	NA	NA
WP_012414010.1|3666493_3667129_-	hypothetical protein	NA	F1BUK5	Cronobacter_phage	56.9	5.9e-57
WP_012303695.1|3667121_3668306_-|plate	baseplate J/gp47 family protein	plate	F1BUK6	Cronobacter_phage	65.7	2.3e-150
WP_012303694.1|3668298_3668631_-	DUF2590 family protein	NA	F1BUK8	Cronobacter_phage	68.3	1.5e-35
WP_012414011.1|3668630_3670607_-|tail	phage tail tape measure protein	tail	F1BUK9	Cronobacter_phage	48.5	2.0e-172
WP_012303692.1|3670794_3671061_-	hypothetical protein	NA	A5X9I7	Aeromonas_virus	54.9	1.0e-18
WP_012303691.1|3671210_3671552_-	hypothetical protein	NA	F1BUL2	Cronobacter_phage	40.9	6.3e-13
WP_024063639.1|3671551_3671893_-	M15 family metallopeptidase	NA	F1BUL3	Cronobacter_phage	82.2	1.5e-43
WP_012303689.1|3671889_3672180_-|holin	holin	holin	Q6K1I2	Salmonella_virus	52.8	2.2e-14
WP_012303688.1|3672189_3672642_-	DUF2597 family protein	NA	F1BUL4	Cronobacter_phage	59.5	2.4e-44
WP_012414012.1|3672638_3673778_-	DUF2586 family protein	NA	F1BUL5	Cronobacter_phage	65.7	3.0e-136
WP_032467120.1|3673804_3674479_-	hypothetical protein	NA	F1BUL6	Cronobacter_phage	68.2	2.8e-81
WP_012414014.1|3674478_3674967_-|tail	phage tail protein	tail	F1BUL7	Cronobacter_phage	41.8	1.5e-31
WP_012414015.1|3674963_3675416_-|head	head completion/stabilization protein	head	F1BUL8	Cronobacter_phage	56.7	5.2e-39
WP_012414016.1|3675511_3676210_-|terminase	terminase	terminase	F1BUM0	Cronobacter_phage	52.6	2.5e-64
WP_012414017.1|3676220_3677252_-|capsid	phage major capsid protein, P2 family	capsid	F1BUM2	Cronobacter_phage	76.1	2.1e-144
WP_012414018.1|3677306_3678161_-|capsid	GPO family capsid scaffolding protein	capsid	F1BUM4	Cronobacter_phage	48.8	1.1e-66
WP_024063638.1|3678327_3680115_+	hypothetical protein	NA	F1BUM5	Cronobacter_phage	66.6	3.1e-236
WP_012414020.1|3680111_3681134_+|portal	phage portal protein	portal	F1BUM7	Cronobacter_phage	69.4	1.8e-140
WP_024063636.1|3681184_3681445_+	ogr/Delta-like zinc finger family protein	NA	F1BUM8	Cronobacter_phage	64.3	7.6e-27
WP_024063635.1|3681488_3683894_-	replication endonuclease	NA	F1BUS0	Erwinia_phage	51.9	2.4e-207
WP_042593083.1|3683890_3684805_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	E5G6L8	Salmonella_phage	53.1	4.2e-80
WP_032467125.1|3684810_3685371_-	3'-5' exonuclease	NA	A0A1D9C9N8	Salinivibrio_phage	62.2	3.1e-57
WP_024063632.1|3685451_3686141_-	DUF3850 domain-containing protein	NA	A0A1P8DUQ0	Escherichia_phage	50.7	2.4e-11
WP_024063631.1|3686211_3686568_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024063630.1|3686582_3686804_-	DUF2724 domain-containing protein	NA	NA	NA	NA	NA
WP_024063629.1|3686847_3687126_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024063628.1|3687240_3687597_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024063627.1|3687705_3688005_+	helix-turn-helix transcriptional regulator	NA	Q1JS29	Enterobacteria_phage	61.6	2.3e-27
WP_024063626.1|3688071_3689070_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A0F7LBR0	Escherichia_phage	59.9	3.5e-112
WP_002228330.1|3689488_3690646_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA	NA
WP_012413427.1|3690745_3691768_+|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	99.7	7.0e-201
WP_001297096.1|3691767_3692547_+	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	4.5e-139
WP_002209465.1|3692709_3693831_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
WP_032467141.1|3693843_3694914_-	3-deoxy-7-phosphoheptulonate synthase	NA	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	51.4	1.5e-89
WP_002223245.1|3695145_3695862_+	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_012105614.1|3696294_3697638_+	anaerobic C4-dicarboxylate transporter	NA	NA	NA	NA	NA
3695995:3696012	attR	CTGCAACTCGAATTATTT	NA	NA	NA	NA
WP_002209462.1|3697960_3698728_+	YdiY family protein	NA	NA	NA	NA	NA
WP_002209461.1|3698990_3699338_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_002222284.1|3699418_3700159_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_011191812.1|3700197_3700746_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_002209458.1|3700767_3701016_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_011191811.1|3701243_3702605_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_002209455.1|3702770_3703562_+	inner membrane protein YpjD	NA	NA	NA	NA	NA
WP_162484092.1|3703633_3704914_+	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_002209453.1|3705002_3705518_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
WP_012413500.1|3705685_3707284_-	glutamate--cysteine ligase	NA	NA	NA	NA	NA
WP_002209451.1|3707327_3707756_-	DedA family protein	NA	NA	NA	NA	NA
WP_002209450.1|3707752_3708319_-	fructose-1-phosphate/6-phosphogluconate phosphatase	NA	NA	NA	NA	NA
WP_002209449.1|3709618_3709804_-	carbon storage regulator CsrA	NA	A0A2I7RT00	Vibrio_phage	66.7	3.8e-12
WP_011191808.1|3710053_3712681_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	36.5	7.9e-79
>prophage 8
NZ_LT596221	Yersinia pseudotuberculosis isolate NZYP4713 chromosome 1	4724276	3859207	3939122	4724276	transposase,plate	Yellowstone_lake_phycodnavirus(18.18%)	60	NA	NA
WP_002209743.1|3859207_3860416_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	5.4e-51
WP_002209320.1|3860608_3861652_-	GMP reductase	NA	A0A0N9Q9A5	Chrysochromulina_ericina_virus	56.2	6.3e-104
WP_002209319.1|3861947_3862568_+	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_002209318.1|3862564_3863317_+	cell division protein ZapD	NA	NA	NA	NA	NA
WP_002209317.1|3863524_3863731_+	DNA gyrase inhibitor YacG	NA	NA	NA	NA	NA
WP_002213759.1|3863920_3864379_-|transposase	IS200/IS605-like element IS1541A family transposase	transposase	I4AZI8	Saccharomonospora_phage	31.5	8.5e-13
WP_002210424.1|3864593_3864980_-	8-oxo-dGTP diphosphatase MutT	NA	A0A0B5CYJ3	Rhizoctonia_fumigata_mycovirus	30.4	8.4e-06
WP_002210426.1|3865274_3867989_-	preprotein translocase subunit SecA	NA	NA	NA	NA	NA
WP_011191738.1|3868066_3868600_-	secA regulator SecM	NA	NA	NA	NA	NA
WP_002210428.1|3868628_3869153_+	DUF721 domain-containing protein	NA	NA	NA	NA	NA
WP_002228285.1|3869319_3870240_-	UDP-3-O-acyl-N-acetylglucosamine deacetylase	NA	NA	NA	NA	NA
WP_002210430.1|3870339_3871491_-	cell division protein FtsZ	NA	NA	NA	NA	NA
WP_002210431.1|3871563_3872820_-	cell division protein FtsA	NA	NA	NA	NA	NA
WP_011191736.1|3872846_3873674_-	cell division protein FtsQ	NA	NA	NA	NA	NA
WP_002210432.1|3873675_3874596_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
WP_002216457.1|3874588_3876064_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
WP_011191735.1|3876201_3877272_-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA	NA
WP_002210435.1|3877268_3878471_-	cell division protein FtsW	NA	NA	NA	NA	NA
WP_011191734.1|3878470_3879787_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
WP_002210437.1|3879789_3880872_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
WP_011191733.1|3880865_3882242_-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA	NA
WP_012105673.1|3882238_3883726_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	NA	NA	NA	NA	NA
WP_011191731.1|3883712_3885476_-	peptidoglycan glycosyltransferase FtsI	NA	NA	NA	NA	NA
WP_002210441.1|3885541_3885859_-	cell division protein FtsL	NA	NA	NA	NA	NA
WP_002210442.1|3885855_3886818_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_011191730.1|3886820_3887279_-	division/cell wall cluster transcriptional repressor MraZ	NA	NA	NA	NA	NA
WP_087768171.1|3887833_3887923_-	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
WP_002210446.1|3888380_3888821_+	L-alanine exporter AlaE	NA	NA	NA	NA	NA
WP_011191729.1|3888951_3889962_-	catabolite repressor/activator	NA	NA	NA	NA	NA
WP_002210448.1|3890429_3890924_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_002228103.1|3890926_3892654_-	acetolactate synthase 3 large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	29.4	7.8e-59
WP_002216437.1|3893113_3894919_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.2	3.5e-38
WP_002216434.1|3895476_3896433_-	transcriptional regulator LeuO	NA	NA	NA	NA	NA
WP_012413476.1|3897110_3897302_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002210453.1|3897648_3899211_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_011191728.1|3899213_3900305_+	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_011191727.1|3900306_3901737_+	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_002210456.1|3901751_3902354_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_011191726.1|3902613_3903795_-	MFS transporter	NA	NA	NA	NA	NA
WP_011191725.1|3904440_3906102_+	HTH-type transcriptional regulator SgrR	NA	NA	NA	NA	NA
WP_012413474.1|3906648_3906780_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_011191723.1|3907024_3908527_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002214274.1|3909179_3910172_+	thiamine ABC transporter substrate binding subunit	NA	NA	NA	NA	NA
WP_011191722.1|3910147_3911755_+	thiamine/thiamine pyrophosphate ABC transporter permease ThiP	NA	NA	NA	NA	NA
WP_011191721.1|3911741_3912452_+	thiamine ABC transporter ATP-binding protein ThiQ	NA	G3M9Y6	Bacillus_virus	34.1	1.3e-20
WP_002210465.1|3912520_3913288_-	DedA family protein	NA	NA	NA	NA	NA
WP_011191720.1|3913483_3915853_+	DNA polymerase II	NA	A0A0P0YM26	Yellowstone_lake_phycodnavirus	25.5	1.1e-31
WP_011191719.1|3916313_3919220_+	RNA polymerase-associated protein RapA	NA	A0A1B1IUI1	uncultured_Mediterranean_phage	37.1	6.8e-23
WP_002210468.1|3919475_3919829_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011191718.1|3923353_3924964_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA	NA
WP_002210470.1|3924960_3926316_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_011191717.1|3926417_3926909_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_002214737.1|3926901_3927267_-	DUF4150 domain-containing protein	NA	NA	NA	NA	NA
WP_002210473.1|3927272_3927890_-	DUF3540 domain-containing protein	NA	NA	NA	NA	NA
WP_002214739.1|3927882_3928986_-	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
WP_011191716.1|3929011_3931231_-	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
WP_011191715.1|3931243_3933592_-	type VI secretion system tip protein VgrG	NA	A0A2H4JCD4	uncultured_Caudovirales_phage	32.9	2.1e-14
WP_002210475.1|3933695_3936284_-	type VI secretion system ATPase TssH	NA	A0A248SJW6	Salicola_phage	28.7	1.9e-77
WP_002210476.1|3936301_3937285_-|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_011191714.1|3937277_3939122_-|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
>prophage 1
NZ_LT596222	Yersinia pseudotuberculosis isolate NZYP4713 plasmid 2	69815	38155	67000	69815	transposase,protease	Enterobacteria_phage(50.0%)	26	NA	NA
WP_002209743.1|38155_39364_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	5.4e-51
WP_011191379.1|40113_40329_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071879997.1|40653_42306_+	T3SS effector E3 ubiquitin ligase YopM	NA	NA	NA	NA	NA
WP_011191376.1|43541_43961_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012414151.1|44309_44621_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011191374.1|45056_46025_-|protease	T3SS effector cysteine protease YopT	protease	NA	NA	NA	NA
WP_011191373.1|46524_47073_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071819182.1|47670_48300_+	conjugal transfer protein TraT	NA	NA	NA	NA	NA
WP_002220902.1|50313_51480_+	plasmid-partitioning protein SopA	NA	Q7Y3Y6	Yersinia_phage	85.3	3.5e-196
WP_002213354.1|51476_52442_+	ParB/RepB/Spo0J family plasmid partition protein	NA	Q7Y3Y7	Yersinia_phage	56.6	3.1e-89
WP_155759211.1|52601_53018_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002213357.1|53166_53340_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012414146.1|53882_54125_+	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA	NA
WP_002213360.1|54117_54417_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_002229754.1|54556_55216_-	type III secretion system effector GTPase activator YopE	NA	NA	NA	NA	NA
WP_002213403.1|55409_55802_+	type III secretion system chaperone SycE/YerA	NA	NA	NA	NA	NA
WP_011191364.1|56416_57589_+|transposase	IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	95.6	1.8e-221
WP_002213267.1|58364_58790_+	type III secretion system chaperone SycH	NA	NA	NA	NA	NA
WP_086025330.1|58937_60037_-|transposase	IS3-like element ISYps8 family transposase	transposase	S5WIU1	Leptospira_phage	39.3	5.7e-47
WP_002229829.1|60136_60466_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012414143.1|60604_61069_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002213258.1|61087_61639_-	recombinase family protein	NA	Q1MVP4	Enterobacteria_phage	80.3	5.9e-77
WP_002213256.1|61802_64118_+|transposase	Tn3 family transposase	transposase	Q1MVP5	Enterobacteria_phage	51.6	1.0e-279
WP_011191362.1|65103_66402_+	trimeric autotransporter adhesin YadA	NA	Q9MCI8	Enterobacteria_phage	54.2	2.0e-11
WP_106461760.1|66404_66704_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042469136.1|66730_67000_-|transposase	transposase	transposase	NA	NA	NA	NA
