assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900089455.2_OrrDiv2	NZ_LT907988	Orrella dioscoreae isolate Orrdi1 chromosome I	1	624974-625051	1	CRISPRCasFinder	no		PD-DExK,csa3,cas3,DEDDh,DinG	Orphan	GTTCCAGGCGGGGCGGCGGTTCGA	24	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csa3,cas3,DEDDh,DinG	NA,NA|58aa|down_3|NZ_LT907988.1_628432_628606_-,NA|81aa|down_4|NZ_LT907988.1_628716_628959_-	NA|325aa|up_9|NZ_LT907988.1_611391_612366_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|638aa|up_8|NZ_LT907988.1_612494_614408_-	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional	NA|214aa|up_7|NZ_LT907988.1_614808_615450_+	PRK05812, secD, preprotein translocase subunit SecD; Reviewed	NA|479aa|up_6|NZ_LT907988.1_615538_616975_-	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]	NA|229aa|up_5|NZ_LT907988.1_616971_617658_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|216aa|up_4|NZ_LT907988.1_617654_618302_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|258aa|up_3|NZ_LT907988.1_618304_619078_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|362aa|up_2|NZ_LT907988.1_619274_620360_+	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]	NA|664aa|up_1|NZ_LT907988.1_620529_622521_+	PHA03307, PHA03307, transcriptional regulator ICP4; Provisional	NA|525aa|up_0|NZ_LT907988.1_622657_624232_-	COG0787, Alr, Alanine racemase [Cell envelope biogenesis, outer membrane]	NA|573aa|down_0|NZ_LT907988.1_625580_627299_+	TIGR02516, type_III_yscC, type III secretion outer membrane pore, YscC/HrcC family	NA|182aa|down_1|NZ_LT907988.1_627352_627898_-	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|152aa|down_2|NZ_LT907988.1_627945_628401_-	cd17020, T3SC_IA_ShcM-like, Class IA type III secretion system chaperone protein, similar to Pseudomonas syringae chaperone protein ShcM	NA|58aa|down_3|NZ_LT907988.1_628432_628606_-	NA	NA|81aa|down_4|NZ_LT907988.1_628716_628959_-	NA	NA|442aa|down_5|NZ_LT907988.1_629010_630336_-	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|321aa|down_6|NZ_LT907988.1_630434_631397_-	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|88aa|down_7|NZ_LT907988.1_631393_631657_-	COG4794, EscS, Type III secretory pathway, component EscS [Intracellular trafficking and secretion]	NA|218aa|down_8|NZ_LT907988.1_631663_632317_-	PRK12797, PRK12797, type III secretion system protein YscR; Provisional	NA|379aa|down_9|NZ_LT907988.1_632313_633450_-	TIGR02551, translocation_protein_Q, type III secretion system apparatus protein YscQ/HrcQ
GCF_900089455.2_OrrDiv2	NZ_LT907988	Orrella dioscoreae isolate Orrdi1 chromosome I	2	1311640-1311791	1,2	PILER-CR,CRISPRCasFinder	no		PD-DExK,csa3,cas3,DEDDh,DinG	Orphan	GTGTTCCCCGCGCGAGCGGGGATGAGCCG,GTGTTCCCCGCGCGAGCGGGGATGA	29,25	0	0	NA	NA	I-E:I-E	2,2	2	Orphan	PD-DExK,csa3,cas3,DEDDh,DinG	NA|174aa|up_6|NZ_LT907988.1_1303857_1304379_-,NA|179aa|up_5|NZ_LT907988.1_1304451_1304988_-,NA|242aa|up_1|NZ_LT907988.1_1309585_1310311_+,NA|119aa|down_2|NZ_LT907988.1_1315517_1315874_+,NA|50aa|down_5|NZ_LT907988.1_1317080_1317230_-,NA|88aa|down_6|NZ_LT907988.1_1317373_1317637_-,NA|78aa|down_9|NZ_LT907988.1_1319419_1319653_-	NA|355aa|up_9|NZ_LT907988.1_1301008_1302073_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|228aa|up_8|NZ_LT907988.1_1302314_1302998_+	PRK05305, PRK05305, phosphatidylserine decarboxylase family protein	NA|256aa|up_7|NZ_LT907988.1_1303005_1303773_+	COG1183, PssA, Phosphatidylserine synthase [Lipid metabolism]	NA|174aa|up_6|NZ_LT907988.1_1303857_1304379_-	NA	NA|179aa|up_5|NZ_LT907988.1_1304451_1304988_-	NA	NA|90aa|up_4|NZ_LT907988.1_1305268_1305538_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|719aa|up_3|NZ_LT907988.1_1305807_1307964_+	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|452aa|up_2|NZ_LT907988.1_1308035_1309390_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|242aa|up_1|NZ_LT907988.1_1309585_1310311_+	NA	NA|406aa|up_0|NZ_LT907988.1_1310342_1311560_+	PRK07334, PRK07334, threonine dehydratase; Provisional	NA|258aa|down_0|NZ_LT907988.1_1312556_1313330_+	pfam12981, DUF3865, Domain of Unknown Function with PDB structure (DUF3865)	NA|443aa|down_1|NZ_LT907988.1_1313789_1315118_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|119aa|down_2|NZ_LT907988.1_1315517_1315874_+	NA	NA|132aa|down_3|NZ_LT907988.1_1315989_1316385_+	pfam06476, DUF1090, Protein of unknown function (DUF1090)	NA|177aa|down_4|NZ_LT907988.1_1316438_1316969_+	pfam13470, PIN_3, PIN domain	NA|50aa|down_5|NZ_LT907988.1_1317080_1317230_-	NA	NA|88aa|down_6|NZ_LT907988.1_1317373_1317637_-	NA	NA|249aa|down_7|NZ_LT907988.1_1318158_1318905_-	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|69aa|down_8|NZ_LT907988.1_1319189_1319396_-	pfam13986, DUF4224, Domain of unknown function (DUF4224)	NA|78aa|down_9|NZ_LT907988.1_1319419_1319653_-	NA
GCF_900089455.2_OrrDiv2	NZ_LT907988	Orrella dioscoreae isolate Orrdi1 chromosome I	3	2099117-2099216	3	CRISPRCasFinder	no		PD-DExK,csa3,cas3,DEDDh,DinG	Orphan	TTTTTTTGCCGCCGGGCCGCCCC	23	1	8	2099140-2099193|2099140-2099193|2099140-2099193|2099140-2099193|2099140-2099193|2099140-2099193|2099140-2099193|2099140-2099193	NZ_LT907988.1_3558926-3558873|NZ_LT907988.1_3559004-3558951|NZ_LT907988.1_3559082-3559029|NZ_LT907988.1_3559160-3559107|NZ_LT907988.1_3559238-3559185|NZ_LT907988.1_655408-655461|NZ_LT907988.1_3917918-3917971|NZ_LT907988.1_4189839-4189786	NA	1	1	Orphan	PD-DExK,csa3,cas3,DEDDh,DinG	NA,NA|179aa|down_3|NZ_LT907988.1_2103047_2103584_+	NA|331aa|up_9|NZ_LT907988.1_2089575_2090568_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|189aa|up_8|NZ_LT907988.1_2090763_2091330_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|182aa|up_7|NZ_LT907988.1_2091326_2091872_+	TIGR02406, L-24-diaminobutyric_acid_acetyltransferase, diaminobutyrate acetyltransferase	NA|437aa|up_6|NZ_LT907988.1_2091950_2093261_+	PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate transaminase	NA|133aa|up_5|NZ_LT907988.1_2093257_2093656_+	PRK13290, ectC, L-ectoine synthase; Reviewed	NA|308aa|up_4|NZ_LT907988.1_2093671_2094595_+	TIGR02408, putative_L-proline_4-hydroxylase, ectoine hydroxylase	NA|123aa|up_3|NZ_LT907988.1_2094793_2095162_+	PRK05449, PRK05449, aspartate alpha-decarboxylase; Provisional	NA|349aa|up_2|NZ_LT907988.1_2095253_2096300_+	PRK07609, PRK07609, CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated	NA|419aa|up_1|NZ_LT907988.1_2096488_2097745_+	PRK00711, PRK00711, D-amino acid dehydrogenase	NA|438aa|up_0|NZ_LT907988.1_2097754_2099068_+	PRK10974, PRK10974, sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA|269aa|down_0|NZ_LT907988.1_2099319_2100126_+	cd06911, VirB9_CagX_TrbG, VirB9/CagX/TrbG, a component of the type IV secretion system	NA|541aa|down_1|NZ_LT907988.1_2100122_2101745_+	TIGR02520, putative_Type_IV_pilus_protein, type IVB pilus formation outer membrane protein, R64 PilN family	NA|438aa|down_2|NZ_LT907988.1_2101747_2103061_+	pfam06864, PAP_PilO, Pilin accessory protein (PilO)	NA|179aa|down_3|NZ_LT907988.1_2103047_2103584_+	NA	NA|563aa|down_4|NZ_LT907988.1_2103601_2105290_+	COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]	NA|377aa|down_5|NZ_LT907988.1_2105286_2106417_+	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]	NA|215aa|down_6|NZ_LT907988.1_2106466_2107111_+	COG4969, PilA, Tfp pilus assembly protein, major pilin PilA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|399aa|down_7|NZ_LT907988.1_2107085_2108282_+	pfam04917, Shufflon_N, Bacterial shufflon protein, N-terminal constant region	NA|874aa|down_8|NZ_LT907988.1_2108349_2110971_+	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|89aa|down_9|NZ_LT907988.1_2111030_2111297_+	cd00291, SirA_YedF_YeeD, SirA, YedF, and YeeD
GCF_900089455.2_OrrDiv2	NZ_LT907988	Orrella dioscoreae isolate Orrdi1 chromosome I	4	2726135-2726240	4	CRISPRCasFinder	no	csa3	PD-DExK,csa3,cas3,DEDDh,DinG	Type I-A	CTTTTTTGCCGCCGGGCCGCCCCAAGGCAA	30	1	10	2726165-2726210|2726165-2726210|2726165-2726210|2726165-2726210|2726165-2726210|2726165-2726210|2726165-2726210|2726165-2726210|2726165-2726210|2726165-2726210	NZ_LT907988.1_4577974-4578019|NZ_LT907988.1_4835029-4835074|NZ_LT907988.1_4189831-4189786|NZ_LT907988.1_655416-655461|NZ_LT907988.1_2273862-2273907|NZ_LT907988.1_1569396-1569351|NZ_LT907988.1_3558918-3558873|NZ_LT907988.1_3558996-3558951|NZ_LT907988.1_3559074-3559029|NZ_LT907988.1_3559152-3559107	NA	1	1	Orphan	PD-DExK,csa3,cas3,DEDDh,DinG	NA|121aa|up_8|NZ_LT907988.1_2715105_2715468_-,NA|126aa|up_7|NZ_LT907988.1_2715496_2715874_-,NA	NA|323aa|up_9|NZ_LT907988.1_2714051_2715020_+	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|121aa|up_8|NZ_LT907988.1_2715105_2715468_-	NA	NA|126aa|up_7|NZ_LT907988.1_2715496_2715874_-	NA	NA|405aa|up_6|NZ_LT907988.1_2715923_2717138_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|261aa|up_5|NZ_LT907988.1_2717150_2717933_-	PRK06127, PRK06127, enoyl-CoA hydratase; Provisional	NA|267aa|up_4|NZ_LT907988.1_2718069_2718870_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|611aa|up_3|NZ_LT907988.1_2719095_2720928_-	COG4264, RhbC, Siderophore synthetase component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|422aa|up_2|NZ_LT907988.1_2720948_2722214_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|461aa|up_1|NZ_LT907988.1_2722210_2723593_-	COG3486, IucD, Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|812aa|up_0|NZ_LT907988.1_2723586_2726022_-	PRK10044, PRK10044, ferrichrome outer membrane transporter; Provisional	NA|342aa|down_0|NZ_LT907988.1_2726265_2727291_-	PRK09774, PRK09774, fec operon regulator FecR; Reviewed	NA|165aa|down_1|NZ_LT907988.1_2727283_2727778_-	PRK09651, PRK09651, RNA polymerase sigma factor FecI; Provisional	NA|414aa|down_2|NZ_LT907988.1_2727845_2729087_-	cd17485, MFS_MFSD3, Major facilitator superfamily domain containing 3 protein	NA|298aa|down_3|NZ_LT907988.1_2729086_2729980_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|244aa|down_4|NZ_LT907988.1_2730149_2730881_+	COG3473, COG3473, Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|283aa|down_5|NZ_LT907988.1_2731000_2731849_+	PRK05463, PRK05463, putative hydro-lyase	NA|373aa|down_6|NZ_LT907988.1_2731874_2732993_+	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold	NA|187aa|down_7|NZ_LT907988.1_2733053_2733614_+	pfam04290, DctQ, Tripartite ATP-independent periplasmic transporters, DctQ component	NA|424aa|down_8|NZ_LT907988.1_2733613_2734885_+	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]	NA|227aa|down_9|NZ_LT907988.1_2734955_2735636_+	COG0684, MenG, Demethylmenaquinone methyltransferase [Coenzyme metabolism]
GCF_900089455.2_OrrDiv2	NZ_LT907988	Orrella dioscoreae isolate Orrdi1 chromosome I	5	3917846-3917961	5	CRISPRCasFinder	no		PD-DExK,csa3,cas3,DEDDh,DinG	Orphan	AAAAGCGGCCCCCTTGGGGGGCAGCAAGCCGAAGGCGC	38	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csa3,cas3,DEDDh,DinG	NA|48aa|up_1|NZ_LT907988.1_3916607_3916751_-,NA|130aa|down_2|NZ_LT907988.1_3919259_3919649_-	NA|251aa|up_9|NZ_LT907988.1_3909379_3910132_+	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system	NA|238aa|up_8|NZ_LT907988.1_3910128_3910842_+	cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter	NA|656aa|up_7|NZ_LT907988.1_3910848_3912816_-	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS	NA|296aa|up_6|NZ_LT907988.1_3912812_3913700_-	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS	NA|340aa|up_5|NZ_LT907988.1_3913703_3914723_-	cd16934, HATPase_RsbT-like, Histidine kinase-like ATPase domain of the anti sigma-B factor Bacillus subtilis serine/threonine-protein kinase RsbT, and related domains	NA|135aa|up_4|NZ_LT907988.1_3914713_3915118_-	cd16934, HATPase_RsbT-like, Histidine kinase-like ATPase domain of the anti sigma-B factor Bacillus subtilis serine/threonine-protein kinase RsbT, and related domains	NA|125aa|up_3|NZ_LT907988.1_3915107_3915482_-	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|282aa|up_2|NZ_LT907988.1_3915486_3916332_-	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|48aa|up_1|NZ_LT907988.1_3916607_3916751_-	NA	NA|318aa|up_0|NZ_LT907988.1_3916793_3917747_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|320aa|down_0|NZ_LT907988.1_3918111_3919071_+	COG0798, ACR3, Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]	NA|64aa|down_1|NZ_LT907988.1_3919071_3919263_-	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|130aa|down_2|NZ_LT907988.1_3919259_3919649_-	NA	NA|418aa|down_3|NZ_LT907988.1_3919790_3921044_+	cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins	NA|262aa|down_4|NZ_LT907988.1_3921069_3921855_-	COG3836, HpcH, 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]	NA|636aa|down_5|NZ_LT907988.1_3921973_3923881_-	TIGR04479, bcpD_PhpK_rSAM, radical SAM P-methyltransferase, PhpK family	NA|187aa|down_6|NZ_LT907988.1_3924123_3924684_+	PRK09651, PRK09651, RNA polymerase sigma factor FecI; Provisional	NA|318aa|down_7|NZ_LT907988.1_3924737_3925691_+	PRK09774, PRK09774, fec operon regulator FecR; Reviewed	NA|792aa|down_8|NZ_LT907988.1_3925906_3928282_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|302aa|down_9|NZ_LT907988.1_3928295_3929201_-	pfam06719, AraC_N, AraC-type transcriptional regulator N-terminus
