assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900087655.1_PFRJS14	NZ_LT593929	Propionibacterium freudenreichii isolate PFRJS14 chromosome I	1	1595184-1595290	1	CRISPRCasFinder	no		csa3,cas3,WYL,DinG,DEDDh	Orphan	ACCTCAACGGTGGTGAGTGTCCGCCCCCCACATGCC	36	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DinG,DEDDh	NA,NA|105aa|down_4|NZ_LT593929.1_1602269_1602584_+	NA|239aa|up_9|NZ_LT593929.1_1583914_1584631_-	TIGR03936, radical_SAM-linked_protein, radical SAM-linked protein	NA|152aa|up_8|NZ_LT593929.1_1584730_1585186_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|419aa|up_7|NZ_LT593929.1_1585400_1586657_+	TIGR03718, R_switched_Alx, integral membrane protein, TerC family	NA|358aa|up_6|NZ_LT593929.1_1586680_1587754_+	COG0387, ChaA, Ca2+/H+ antiporter [Inorganic ion transport and metabolism]	NA|648aa|up_5|NZ_LT593929.1_1587817_1589761_-	TIGR03960, radical_SAM_domain_protein, radical SAM family uncharacterized protein	NA|424aa|up_4|NZ_LT593929.1_1589837_1591109_-	COG1266, COG1266, Predicted metal-dependent membrane protease [General function prediction only]	NA|132aa|up_3|NZ_LT593929.1_1591105_1591501_-	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated	NA|502aa|up_2|NZ_LT593929.1_1591660_1593166_-	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism]	NA|197aa|up_1|NZ_LT593929.1_1593301_1593892_+	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|265aa|up_0|NZ_LT593929.1_1593927_1594722_+	pfam13462, Thioredoxin_4, Thioredoxin	NA|876aa|down_0|NZ_LT593929.1_1595940_1598568_+	NF000540, alt_ValS, valine--tRNA ligase	NA|250aa|down_1|NZ_LT593929.1_1598674_1599424_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|374aa|down_2|NZ_LT593929.1_1599508_1600630_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|481aa|down_3|NZ_LT593929.1_1600708_1602151_-	PRK09225, PRK09225, threonine synthase; Validated	NA|105aa|down_4|NZ_LT593929.1_1602269_1602584_+	NA	NA|426aa|down_5|NZ_LT593929.1_1602695_1603973_-	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX	NA|212aa|down_6|NZ_LT593929.1_1604094_1604730_-	PRK12553, PRK12553, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|204aa|down_7|NZ_LT593929.1_1604807_1605419_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|411aa|down_8|NZ_LT593929.1_1605529_1606762_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|398aa|down_9|NZ_LT593929.1_1606994_1608188_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]
GCF_900087655.1_PFRJS14	NZ_LT593929	Propionibacterium freudenreichii isolate PFRJS14 chromosome I	2	1770423-1770521	2	CRISPRCasFinder	no		csa3,cas3,WYL,DinG,DEDDh	Orphan	GGTCAGCCCAACAAGCTGACCCAC	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DinG,DEDDh	NA,NA	NA|108aa|up_9|NZ_LT593929.1_1756923_1757247_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|287aa|up_8|NZ_LT593929.1_1757252_1758113_-	PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	NA|518aa|up_7|NZ_LT593929.1_1758186_1759740_-	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|283aa|up_6|NZ_LT593929.1_1759861_1760710_-	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed	NA|830aa|up_5|NZ_LT593929.1_1762055_1764545_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|418aa|up_4|NZ_LT593929.1_1764681_1765935_+	COG1502, Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]	NA|252aa|up_3|NZ_LT593929.1_1765991_1766747_-	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]	NA|347aa|up_2|NZ_LT593929.1_1766743_1767784_-	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|319aa|up_1|NZ_LT593929.1_1767854_1768811_-	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|339aa|up_0|NZ_LT593929.1_1768882_1769899_-	COG4607, CeuA, ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|233aa|down_0|NZ_LT593929.1_1770677_1771376_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|398aa|down_1|NZ_LT593929.1_1771372_1772566_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|112aa|down_2|NZ_LT593929.1_1772912_1773248_+	pfam04024, PspC, PspC domain	NA|314aa|down_3|NZ_LT593929.1_1773547_1774489_+	cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR)	NA|296aa|down_4|NZ_LT593929.1_1774539_1775427_-	pfam09234, DUF1963, Domain of unknown function (DUF1963)	NA|518aa|down_5|NZ_LT593929.1_1775631_1777185_-	PRK00074, guaA, GMP synthase; Reviewed	NA|343aa|down_6|NZ_LT593929.1_1777479_1778508_-	PRK11618, PRK11618, inner membrane ABC transporter permease protein YjfF; Provisional	NA|353aa|down_7|NZ_LT593929.1_1778504_1779563_-	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|327aa|down_8|NZ_LT593929.1_1781229_1782210_-	cd06309, PBP1_galactofuranose_YtfQ-like, periplasmic binding domain of ABC-type galactofuranose YtfQ-like transport systems	NA|346aa|down_9|NZ_LT593929.1_1782453_1783491_-	cd01574, PBP1_LacI, ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators
GCF_900087655.1_PFRJS14	NZ_LT593929	Propionibacterium freudenreichii isolate PFRJS14 chromosome I	3	2201138-2201206	3	CRISPRCasFinder	no		csa3,cas3,WYL,DinG,DEDDh	Orphan	GAACAGCCCCACACCGAACGGCCC	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DinG,DEDDh	NA|139aa|up_2|NZ_LT593929.1_2195502_2195919_-,NA|125aa|up_1|NZ_LT593929.1_2195972_2196347_-,NA|247aa|down_1|NZ_LT593929.1_2204297_2205038_-,NA|1132aa|down_2|NZ_LT593929.1_2205195_2208591_+	NA|209aa|up_9|NZ_LT593929.1_2185877_2186504_-	COG2949, SanA, Uncharacterized membrane protein [Function unknown]	NA|591aa|up_8|NZ_LT593929.1_2186801_2188574_-	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|98aa|up_7|NZ_LT593929.1_2190511_2190805_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|435aa|up_6|NZ_LT593929.1_2190818_2192123_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|291aa|up_5|NZ_LT593929.1_2192125_2192998_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|250aa|up_4|NZ_LT593929.1_2193034_2193784_-	cd01714, ETF_beta, The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases	NA|437aa|up_3|NZ_LT593929.1_2193947_2195258_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|139aa|up_2|NZ_LT593929.1_2195502_2195919_-	NA	NA|125aa|up_1|NZ_LT593929.1_2195972_2196347_-	NA	NA|444aa|up_0|NZ_LT593929.1_2196472_2197804_+	pfam01610, DDE_Tnp_ISL3, Transposase	NA|481aa|down_0|NZ_LT593929.1_2202851_2204294_+	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|247aa|down_1|NZ_LT593929.1_2204297_2205038_-	NA	NA|1132aa|down_2|NZ_LT593929.1_2205195_2208591_+	NA	NA|285aa|down_3|NZ_LT593929.1_2208719_2209574_+	cd19138, AKR_YeaE, Escherichia coli YeaE and similar proteins	NA|215aa|down_4|NZ_LT593929.1_2209615_2210260_-	COG0512, PabA, Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]	NA|245aa|down_5|NZ_LT593929.1_2210372_2211107_-	pfam05949, DUF881, Bacterial protein of unknown function (DUF881)	NA|96aa|down_6|NZ_LT593929.1_2211285_2211573_+	PRK02251, PRK02251, cell division protein CrgA	NA|345aa|down_7|NZ_LT593929.1_2211888_2212923_+	pfam16154, DUF4862, Domain of unknown function (DUF4862)	NA|449aa|down_8|NZ_LT593929.1_2213148_2214495_-	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed	NA|325aa|down_9|NZ_LT593929.1_2214505_2215480_-	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
GCF_900087655.1_PFRJS14	NZ_LT593929	Propionibacterium freudenreichii isolate PFRJS14 chromosome I	4	2274443-2274554	4	CRISPRCasFinder	no		csa3,cas3,WYL,DinG,DEDDh	Orphan	GTGGTCACCTGTGCGGCGTCATTGCCGCACAACTGCCCAC	40	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DinG,DEDDh	NA,NA|146aa|down_0|NZ_LT593929.1_2274704_2275142_-,NA|216aa|down_6|NZ_LT593929.1_2282297_2282945_+	NA|229aa|up_9|NZ_LT593929.1_2260040_2260727_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|313aa|up_8|NZ_LT593929.1_2261081_2262020_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|818aa|up_7|NZ_LT593929.1_2262019_2264473_+	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|281aa|up_6|NZ_LT593929.1_2264795_2265638_-	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins	NA|350aa|up_5|NZ_LT593929.1_2265742_2266792_-	COG2706, COG2706, 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]	NA|273aa|up_4|NZ_LT593929.1_2266878_2267697_+	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed	NA|240aa|up_3|NZ_LT593929.1_2267795_2268515_-	cd08563, GDPD_TtGDE_like, Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins	NA|228aa|up_2|NZ_LT593929.1_2268511_2269195_-	PRK08219, PRK08219, SDR family oxidoreductase	NA|452aa|up_1|NZ_LT593929.1_2269327_2270683_+	pfam04892, VanZ, VanZ like family	NA|863aa|up_0|NZ_LT593929.1_2271667_2274256_+	COG1316, LytR, Transcriptional regulator [Transcription]	NA|146aa|down_0|NZ_LT593929.1_2274704_2275142_-	NA	NA|324aa|down_1|NZ_LT593929.1_2275391_2276363_+	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase	NA|475aa|down_2|NZ_LT593929.1_2276536_2277961_+	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|509aa|down_3|NZ_LT593929.1_2278615_2280142_-	COG1316, LytR, Transcriptional regulator [Transcription]	NA|249aa|down_4|NZ_LT593929.1_2280525_2281272_+	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional	NA|166aa|down_5|NZ_LT593929.1_2281439_2281937_-	PRK00522, tpx, thiol peroxidase	NA|216aa|down_6|NZ_LT593929.1_2282297_2282945_+	NA	NA|374aa|down_7|NZ_LT593929.1_2283006_2284128_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|226aa|down_8|NZ_LT593929.1_2284292_2284970_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|465aa|down_9|NZ_LT593929.1_2285008_2286403_-	COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
GCF_900087655.1_PFRJS14	NZ_LT593929	Propionibacterium freudenreichii isolate PFRJS14 chromosome I	5	2374283-2374390	5	CRISPRCasFinder	no		csa3,cas3,WYL,DinG,DEDDh	Orphan	ACCTCGTTCCCGTGCTGGTGCCGGCGCTGTTGGTGGC	37	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DinG,DEDDh	NA,NA	NA|420aa|up_9|NZ_LT593929.1_2362287_2363547_-	cd17393, MFS_MosC_like, Membrane protein MosC and similar proteins of the Major Facilitator Superfamily of transporters	NA|357aa|up_8|NZ_LT593929.1_2363546_2364617_-	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]	NA|334aa|up_7|NZ_LT593929.1_2365011_2366013_+	pfam13683, rve_3, Integrase core domain	NA|259aa|up_6|NZ_LT593929.1_2366205_2366982_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|351aa|up_5|NZ_LT593929.1_2367071_2368124_-	COG0240, GpsA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]	NA|519aa|up_4|NZ_LT593929.1_2368176_2369733_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|60aa|up_3|NZ_LT593929.1_2370161_2370341_-	PRK13745, PRK13745, anaerobic sulfatase-maturation protein	NA|373aa|up_2|NZ_LT593929.1_2370474_2371593_-	TIGR03942, sulfatase_rSAM, anaerobic sulfatase-maturating enzyme	NA|334aa|up_1|NZ_LT593929.1_2372216_2373218_+	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]	NA|230aa|up_0|NZ_LT593929.1_2373526_2374216_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|673aa|down_0|NZ_LT593929.1_2377659_2379678_+	COG2015, COG2015, Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]	NA|104aa|down_1|NZ_LT593929.1_2380483_2380795_+	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|451aa|down_2|NZ_LT593929.1_2380804_2382157_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|322aa|down_3|NZ_LT593929.1_2382518_2383484_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|318aa|down_4|NZ_LT593929.1_2383852_2384806_+	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase	NA|337aa|down_5|NZ_LT593929.1_2384877_2385888_+	TIGR04380, hypothetical_protein_HOLDEFILI_04020, inositol 2-dehydrogenase	NA|289aa|down_6|NZ_LT593929.1_2386107_2386974_+	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|345aa|down_7|NZ_LT593929.1_2387122_2388157_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|313aa|down_8|NZ_LT593929.1_2388401_2389340_+	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|256aa|down_9|NZ_LT593929.1_2389596_2390364_+	cd08562, GDPD_EcUgpQ_like, Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins
