The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT593929	Propionibacterium freudenreichii isolate PFRJS14 chromosome I	2507188	1589837	1651532	2507188	transposase,tRNA,protease	Tupanvirus(13.33%)	47	NA	NA
WP_097850831.1|1589837_1591109_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_055346153.1|1591105_1591501_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	49.6	5.0e-30
WP_097850947.1|1591660_1593166_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_112317735.1|1593301_1593892_+	DoxX family protein	NA	NA	NA	NA	NA
WP_013160742.1|1593927_1594722_+	thioredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_055346964.1|1594985_1595255_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157763636.1|1595266_1595851_+	thioredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_055344004.1|1595940_1598568_+|tRNA	valine--tRNA ligase	tRNA	A0A2K9KZB8	Tupanvirus	36.3	5.3e-160
WP_157763637.1|1598674_1599424_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_013160738.1|1599508_1600630_-	6-phosphofructokinase	NA	NA	NA	NA	NA
WP_097850834.1|1600708_1602151_-	threonine synthase	NA	NA	NA	NA	NA
WP_036939438.1|1602269_1602584_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013160735.1|1602695_1603973_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	59.2	4.4e-136
WP_162484287.1|1604094_1604730_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A248SJ97	Salicola_phage	38.7	1.2e-28
WP_162467436.1|1604807_1605419_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	45.6	9.8e-41
WP_157763638.1|1605529_1606762_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_013160731.1|1606994_1608188_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_013160730.1|1608412_1609996_-	trigger factor	NA	NA	NA	NA	NA
WP_044636081.1|1610730_1611045_-	multidrug efflux SMR transporter	NA	NA	NA	NA	NA
WP_013160728.1|1611156_1611405_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157761975.1|1611598_1613152_+	hypothetical protein	NA	NA	NA	NA	NA
WP_044658233.1|1613148_1615443_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.9	2.3e-103
WP_013160723.1|1615519_1616314_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013160722.1|1616538_1617153_-	DSBA oxidoreductase	NA	NA	NA	NA	NA
WP_060759167.1|1617495_1620099_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	30.8	7.9e-47
WP_013160720.1|1620299_1621757_+	NADP-dependent phosphogluconate dehydrogenase	NA	A0A0P0C6S9	Ostreococcus_lucimarinus_virus	28.4	2.4e-37
WP_013160719.1|1621886_1622708_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_013160718.1|1622854_1623736_-	thioesterase family protein	NA	NA	NA	NA	NA
WP_060759166.1|1623741_1625631_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	24.2	5.0e-43
WP_013160716.1|1625807_1626266_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_097807335.1|1626271_1629100_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_097850836.1|1629220_1631257_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_013160713.1|1631313_1632684_+	DUF4921 family protein	NA	NA	NA	NA	NA
WP_057374794.1|1632670_1634191_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_013160711.1|1634203_1634833_-	dihydroxyacetone kinase subunit L	NA	NA	NA	NA	NA
WP_036939459.1|1634832_1635828_-	dihydroxyacetone kinase subunit DhaK	NA	NA	NA	NA	NA
WP_013160709.1|1635999_1637688_-	energy-dependent translational throttle protein EttA	NA	A0A2K9L0W2	Tupanvirus	28.8	7.9e-48
WP_051733919.1|1637884_1638385_-	single-stranded DNA-binding protein	NA	A0A1J0MC80	Streptomyces_phage	39.3	4.6e-12
WP_060761374.1|1638601_1639264_-	hypothetical protein	NA	NA	NA	NA	NA
WP_055346971.1|1639260_1640904_-	50S ribosome-binding GTPase	NA	NA	NA	NA	NA
WP_097850837.1|1640900_1642748_-	ABC transporter	NA	NA	NA	NA	NA
WP_157763639.1|1642817_1644320_-|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_055345485.1|1644559_1645825_+	MFS transporter	NA	NA	NA	NA	NA
WP_013160702.1|1645845_1646517_+	oligoribonuclease	NA	M4M9I5	Vibrio_phage	35.2	3.1e-19
WP_048768850.1|1647254_1647761_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A060QNR4	Streptococcus_phage	43.4	4.8e-17
WP_097850839.1|1647835_1650175_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	32.2	3.6e-115
WP_055346664.1|1650224_1651532_-|transposase	ISL3 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	71.7	1.1e-182
>prophage 2
NZ_LT593929	Propionibacterium freudenreichii isolate PFRJS14 chromosome I	2507188	2290580	2344651	2507188	transposase,tRNA	Staphylococcus_phage(18.18%)	38	NA	NA
WP_013160063.1|2290580_2291855_-|tRNA	serine--tRNA ligase	tRNA	A0A2K9L088	Tupanvirus	35.8	2.8e-66
WP_172952388.1|2292002_2293607_+	YegS/Rv2252/BmrU family lipid kinase	NA	NA	NA	NA	NA
WP_044657875.1|2294895_2295510_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157763647.1|2295801_2296755_-	aminotransferase class IV	NA	NA	NA	NA	NA
WP_155490387.1|2296747_2298481_-	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	36.2	6.8e-63
WP_055346172.1|2298718_2299708_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_055346171.1|2299908_2301096_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_097850905.1|2301092_2302910_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.1	1.6e-14
WP_048770080.1|2302963_2304532_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	43.2	1.3e-105
WP_060759344.1|2304528_2305194_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_172952389.1|2305190_2305781_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_097850906.1|2305777_2308816_+	type I restriction endonuclease subunit R	NA	NA	NA	NA	NA
WP_097850958.1|2309330_2310425_+	DNA polymerase III subunit epsilon	NA	NA	NA	NA	NA
WP_080970649.1|2310539_2311493_-	macro domain-containing protein	NA	A0A0K1L687	Scale_drop_disease_virus	44.6	1.2e-21
WP_048770075.1|2313520_2314327_-	hypothetical protein	NA	NA	NA	NA	NA
WP_055346843.1|2314504_2316040_-	gluconokinase	NA	NA	NA	NA	NA
WP_013160037.1|2316331_2317195_-	Fpg/Nei family DNA glycosylase	NA	NA	NA	NA	NA
WP_044658304.1|2317187_2317913_-|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
WP_172952078.1|2318287_2320462_-	protein kinase	NA	A0A1M7XTW9	Cedratvirus	26.9	6.9e-12
WP_048770067.1|2320773_2321382_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A1J0GVU2	Streptomyces_phage	44.1	4.7e-27
WP_013160041.1|2321592_2322897_-	citrate synthase	NA	NA	NA	NA	NA
WP_013160042.1|2323416_2324220_+	EcsC family protein	NA	NA	NA	NA	NA
WP_055346839.1|2324330_2325164_-	SdpI family protein	NA	NA	NA	NA	NA
WP_157763598.1|2325378_2326983_-	S8 family serine peptidase	NA	NA	NA	NA	NA
WP_013160045.1|2327004_2328153_-	alanine racemase	NA	A0A0P0YM39	Yellowstone_lake_mimivirus	29.8	1.6e-31
WP_080516175.1|2328325_2329285_-	phosphopantothenoylcysteine decarboxylase	NA	Q9HH70	Methanothermobacter_phage	39.4	1.4e-25
WP_013160047.1|2329922_2330267_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_157763648.1|2330269_2331013_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013160195.1|2331040_2332348_+|transposase	ISL3-like element ISPfr1 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	68.1	1.8e-169
WP_063493589.1|2332384_2332693_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_157761608.1|2332715_2332943_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_080713571.1|2332961_2333906_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013160195.1|2334209_2335517_+|transposase	ISL3-like element ISPfr1 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	68.1	1.8e-169
WP_138428099.1|2338846_2339335_+	hypothetical protein	NA	NA	NA	NA	NA
WP_044635816.1|2339685_2340720_-|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_097850907.1|2340935_2341994_+	triacylglycerol lipase	NA	NA	NA	NA	NA
WP_097850908.1|2342330_2343089_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_097850909.1|2343085_2344651_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
