The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT576038	Propionibacterium freudenreichii isolate PFRJS11 chromosome I	2537402	310143	367315	2537402	transposase,holin	Mycobacterium_phage(27.27%)	41	NA	NA
WP_013161911.1|310143_310617_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_051733961.1|310951_312175_-	Na+/H+ antiporter NhaA	NA	A0A2H4J5W3	uncultured_Caudovirales_phage	38.0	7.7e-53
WP_013161909.1|312479_313229_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_013161908.1|313827_314847_+	P-loop NTPase	NA	NA	NA	NA	NA
WP_013161907.1|314833_315985_+	TadA family conjugal transfer-associated ATPase	NA	NA	NA	NA	NA
WP_013161906.1|315981_316779_+	type II secretion system F family protein	NA	NA	NA	NA	NA
WP_013161905.1|316775_317519_+	type II secretion system F family protein	NA	NA	NA	NA	NA
WP_036940518.1|317651_318257_-	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
WP_080516207.1|318439_318727_+	DUF4244 domain-containing protein	NA	NA	NA	NA	NA
WP_013161902.1|318857_319316_+	hypothetical protein	NA	NA	NA	NA	NA
WP_051733962.1|319477_319810_+	flp pilus-assembly TadE/G-like family protein	NA	NA	NA	NA	NA
WP_036940523.1|319949_320216_-	hypothetical protein	NA	NA	NA	NA	NA
WP_052809186.1|320702_321194_+	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_013161898.1|321409_322621_+	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
WP_097807466.1|322736_325340_+	molybdopterin-dependent oxidoreductase	NA	A0A077SK27	Escherichia_phage	40.5	7.4e-170
WP_013161896.1|325353_325998_+	dimethylsulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	54.6	2.6e-60
WP_013161895.1|325997_327002_+	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA	NA
WP_097807207.1|326998_329461_-	DEAD/DEAH box helicase	NA	A0A1B1IUF6	uncultured_Mediterranean_phage	26.0	2.4e-05
WP_060759474.1|329710_331228_+	methyltransferase	NA	NA	NA	NA	NA
WP_055343980.1|331635_334422_+	type I DNA topoisomerase	NA	A0A0G2Y4W4	Acanthamoeba_polyphaga_mimivirus	32.4	2.4e-94
WP_044658037.1|334465_335911_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013161890.1|335907_336546_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	40.3	4.5e-36
WP_097807467.1|336872_338186_+	DNA polymerase III subunit delta'	NA	S5WKH4	Pseudomonas_phage	32.4	5.4e-12
WP_048733641.1|338333_340013_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013161887.1|340142_341192_+	PSP1 domain-containing protein	NA	NA	NA	NA	NA
WP_013161885.1|341499_342342_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.6	2.6e-28
WP_097807208.1|342341_343856_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_013161883.1|344120_345572_+	amino acid permease	NA	NA	NA	NA	NA
WP_157761943.1|345747_347103_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_157763608.1|347822_349271_-|transposase	IS1380 family transposase	transposase	A0A222ZN33	Mycobacterium_phage	54.2	3.9e-120
WP_075891751.1|349296_350595_-|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
WP_097807211.1|351101_352436_+|transposase	ISL3 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	69.1	2.5e-174
WP_097807212.1|352380_354249_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157763566.1|354253_354700_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157763567.1|355499_356786_+	hypothetical protein	NA	NA	NA	NA	NA
WP_097807216.1|356778_358803_+	hypothetical protein	NA	NA	NA	NA	NA
WP_097807217.1|358789_362422_+	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
WP_172952059.1|362584_363127_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157763569.1|363232_364168_-	GIY-YIG nuclease family protein	NA	NA	NA	NA	NA
WP_157763608.1|364542_365991_-|transposase	IS1380 family transposase	transposase	A0A222ZN33	Mycobacterium_phage	54.2	3.9e-120
WP_075891751.1|366016_367315_-|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_LT576038	Propionibacterium freudenreichii isolate PFRJS11 chromosome I	2537402	1594124	1649637	2537402	tRNA,protease,transposase	Tupanvirus(18.18%)	42	NA	NA
WP_055346104.1|1594124_1595417_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_055346153.1|1595413_1595809_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	49.6	5.0e-30
WP_081012818.1|1595968_1597474_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_112317735.1|1597609_1598200_+	DoxX family protein	NA	NA	NA	NA	NA
WP_013160742.1|1598235_1599030_+	thioredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_097784343.1|1599293_1600088_+	thioredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_097807333.1|1600177_1602805_+|tRNA	valine--tRNA ligase	tRNA	A0A2K9KZB8	Tupanvirus	36.3	1.6e-159
WP_013160739.1|1602911_1603661_-	HAD family hydrolase	NA	NA	NA	NA	NA
WP_013160738.1|1603745_1604867_-	6-phosphofructokinase	NA	NA	NA	NA	NA
WP_044658236.1|1604945_1606388_-	threonine synthase	NA	NA	NA	NA	NA
WP_036939438.1|1606506_1606821_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013160735.1|1606932_1608210_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	59.2	4.4e-136
WP_162484287.1|1608331_1608967_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A248SJ97	Salicola_phage	38.7	1.2e-28
WP_162467436.1|1609044_1609656_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	45.6	9.8e-41
WP_060762516.1|1609766_1610999_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_013160731.1|1611231_1612425_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_013160730.1|1612649_1614233_-	trigger factor	NA	NA	NA	NA	NA
WP_060762060.1|1614968_1615283_-	ligand-binding protein SH3	NA	NA	NA	NA	NA
WP_013160728.1|1615394_1615643_-	hypothetical protein	NA	NA	NA	NA	NA
WP_048769613.1|1615848_1617390_+	hypothetical protein	NA	NA	NA	NA	NA
WP_044658233.1|1617386_1619681_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.9	2.3e-103
WP_013160723.1|1619757_1620552_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044636658.1|1620779_1621781_+|transposase	IS481-like element ISPfr17 family transposase	transposase	NA	NA	NA	NA
WP_013160722.1|1621874_1622489_-	DSBA oxidoreductase	NA	NA	NA	NA	NA
WP_097807334.1|1622831_1625435_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	30.8	7.9e-47
WP_013160720.1|1625632_1627090_+	NADP-dependent phosphogluconate dehydrogenase	NA	A0A0P0C6S9	Ostreococcus_lucimarinus_virus	28.4	2.4e-37
WP_013160719.1|1627219_1628041_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_013160718.1|1628187_1629069_-	thioesterase family protein	NA	NA	NA	NA	NA
WP_055346053.1|1629074_1630964_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	24.4	3.8e-43
WP_013160716.1|1631140_1631599_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_097807335.1|1631604_1634433_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_044658228.1|1634553_1636590_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_013160713.1|1636646_1638017_+	DUF4921 family protein	NA	NA	NA	NA	NA
WP_055346054.1|1638003_1639524_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_013160711.1|1639536_1640166_-	dihydroxyacetone kinase subunit L	NA	NA	NA	NA	NA
WP_013160710.1|1640165_1641161_-	dihydroxyacetone kinase subunit DhaK	NA	NA	NA	NA	NA
WP_013160709.1|1641332_1643021_-	energy-dependent translational throttle protein EttA	NA	A0A2K9L0W2	Tupanvirus	28.8	7.9e-48
WP_013160708.1|1643216_1643717_-	single-stranded DNA-binding protein	NA	A0A1J0MC80	Streptomyces_phage	34.8	6.6e-11
WP_060761374.1|1643933_1644596_-	hypothetical protein	NA	NA	NA	NA	NA
WP_036939462.1|1644592_1646236_-	50S ribosome-binding GTPase	NA	NA	NA	NA	NA
WP_051733921.1|1646232_1648065_-	ABC transporter	NA	NA	NA	NA	NA
WP_057374792.1|1648134_1649637_-|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 3
NZ_LT576038	Propionibacterium freudenreichii isolate PFRJS11 chromosome I	2537402	1664146	1718209	2537402	protease,transposase	Mycobacterium_phage(22.22%)	45	NA	NA
WP_055346098.1|1664146_1665454_+|transposase	ISL3 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	71.0	5.5e-182
WP_097775733.1|1666866_1668110_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	33.1	7.9e-21
WP_172952071.1|1668862_1669909_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_097775889.1|1669910_1670933_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_157761579.1|1670929_1671988_+	polysaccharide pyruvyl transferase family protein	NA	NA	NA	NA	NA
WP_097775891.1|1671984_1672875_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_097775892.1|1672871_1674002_+	hypothetical protein	NA	NA	NA	NA	NA
WP_172952072.1|1674058_1675351_+	oligosaccharide repeat unit polymerase	NA	NA	NA	NA	NA
WP_157761581.1|1675722_1675968_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_157763588.1|1676173_1676545_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_129931526.1|1676580_1676898_-	hypothetical protein	NA	NA	NA	NA	NA
WP_097775897.1|1677007_1678315_-|transposase	ISL3 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	66.9	5.0e-167
WP_165363495.1|1678804_1679080_+	hypothetical protein	NA	NA	NA	NA	NA
WP_028701846.1|1680978_1681980_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_097807341.1|1682107_1683257_+|transposase	IS3-like element ISPfr10 family transposase	transposase	S5WIU1	Leptospira_phage	37.5	8.6e-38
WP_097775899.1|1683419_1684544_+	LCP family protein	NA	NA	NA	NA	NA
WP_081083616.1|1685262_1685904_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013160701.1|1687731_1688238_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A060QNR4	Streptococcus_phage	42.6	1.4e-16
WP_097807342.1|1688312_1690646_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	32.1	2.9e-117
WP_081083624.1|1690715_1691561_+	tyrosine-protein phosphatase	NA	NA	NA	NA	NA
WP_055345425.1|1691673_1692987_+	Mur ligase family protein	NA	NA	NA	NA	NA
WP_013160697.1|1692980_1693754_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013160696.1|1694015_1694465_-	co-chaperone GroES	NA	NA	NA	NA	NA
WP_013160695.1|1694491_1694791_-	DUF3618 domain-containing protein	NA	NA	NA	NA	NA
WP_044636068.1|1694964_1695453_+	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA	NA
WP_013160693.1|1695745_1696438_+	L-ribulose-5-phosphate 4-epimerase	NA	NA	NA	NA	NA
WP_013160692.1|1696418_1697186_+	cobalt-precorrin-6A reductase	NA	NA	NA	NA	NA
WP_013160691.1|1697258_1697849_+	precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT	NA	NA	NA	NA	NA
WP_013160689.1|1697945_1698599_+	precorrin-8X methylmutase	NA	NA	NA	NA	NA
WP_044636667.1|1698748_1699888_+	cobalt-precorrin-5B (C(1))-methyltransferase	NA	NA	NA	NA	NA
WP_044636066.1|1699919_1701185_-	cobalamin biosynthesis protein	NA	NA	NA	NA	NA
WP_097807343.1|1701153_1703799_-	precorrin-3B C(17)-methyltransferase	NA	NA	NA	NA	NA
WP_013160685.1|1703795_1704755_-	precorrin-4 C(11)-methyltransferase	NA	NA	NA	NA	NA
WP_013160684.1|1704784_1705558_-	precorrin-2 C(20)-methyltransferase	NA	NA	NA	NA	NA
WP_048768869.1|1706392_1708309_+	methylmalonyl-CoA mutase small subunit	NA	NA	NA	NA	NA
WP_044636063.1|1708305_1710492_+	methylmalonyl-CoA mutase	NA	NA	NA	NA	NA
WP_055346085.1|1710484_1711498_+	methylmalonyl Co-A mutase-associated GTPase MeaB	NA	NA	NA	NA	NA
WP_013160679.1|1711700_1713152_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_112317801.1|1713155_1713758_-	dihydrofolate reductase	NA	A0A1Y0SUI9	Pseudomonas_phage	32.9	4.1e-15
WP_097807344.1|1713872_1714685_-	thymidylate synthase	NA	A6M9A2	Geobacillus_virus	59.6	1.9e-95
WP_013160676.1|1714686_1715493_-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	X5LRP0	Ugandan_cassava_brown_streak_virus	26.3	3.6e-06
WP_013160675.1|1715489_1716251_-	ribonuclease PH	NA	NA	NA	NA	NA
WP_055344137.1|1716404_1717223_-	glutamate racemase	NA	NA	NA	NA	NA
WP_048735089.1|1717310_1717919_-	DUF2017 domain-containing protein	NA	NA	NA	NA	NA
WP_112317802.1|1717915_1718209_-|protease	ATP-dependent Clp protease adapter ClpS	protease	NA	NA	NA	NA
