assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900087025.1_PFRJS2	NZ_LT576032	Propionibacterium freudenreichii isolate PFRJS2 chromosome I	1	1783537-1783635	1	CRISPRCasFinder	no		csa3,cas3,WYL,DinG,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,csb1gr7,csb2gr5,csb3	Orphan	GGTCAGCCCAACAAGCTGACCCAC	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DinG,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,csb1gr7,csb2gr5,csb3	NA,NA	NA|108aa|up_9|NZ_LT576032.1_1770022_1770346_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|287aa|up_8|NZ_LT576032.1_1770351_1771212_-	PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	NA|518aa|up_7|NZ_LT576032.1_1771285_1772839_-	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|283aa|up_6|NZ_LT576032.1_1772960_1773809_-	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed	NA|830aa|up_5|NZ_LT576032.1_1775154_1777644_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|418aa|up_4|NZ_LT576032.1_1777780_1779034_+	COG1502, Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]	NA|252aa|up_3|NZ_LT576032.1_1779106_1779862_-	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]	NA|347aa|up_2|NZ_LT576032.1_1779858_1780899_-	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|319aa|up_1|NZ_LT576032.1_1780969_1781926_-	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|339aa|up_0|NZ_LT576032.1_1781997_1783014_-	COG4607, CeuA, ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|233aa|down_0|NZ_LT576032.1_1783791_1784490_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|398aa|down_1|NZ_LT576032.1_1784486_1785680_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|112aa|down_2|NZ_LT576032.1_1786025_1786361_+	pfam04024, PspC, PspC domain	NA|314aa|down_3|NZ_LT576032.1_1786660_1787602_+	cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR)	NA|296aa|down_4|NZ_LT576032.1_1787652_1788540_-	pfam09234, DUF1963, Domain of unknown function (DUF1963)	NA|518aa|down_5|NZ_LT576032.1_1788744_1790298_-	PRK00074, guaA, GMP synthase; Reviewed	NA|343aa|down_6|NZ_LT576032.1_1790606_1791635_-	PRK11618, PRK11618, inner membrane ABC transporter permease protein YjfF; Provisional	NA|353aa|down_7|NZ_LT576032.1_1791631_1792690_-	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|501aa|down_8|NZ_LT576032.1_1792686_1794189_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|327aa|down_9|NZ_LT576032.1_1794356_1795337_-	cd06309, PBP1_galactofuranose_YtfQ-like, periplasmic binding domain of ABC-type galactofuranose YtfQ-like transport systems
GCF_900087025.1_PFRJS2	NZ_LT576032	Propionibacterium freudenreichii isolate PFRJS2 chromosome I	2	2082550-2088376	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	csa3,cas3,WYL,DinG,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,csb1gr7,csb2gr5,csb3	Type I-E	GGATCACCCCCGCGTATGCGGGGAGAAC,GGATCACCCCCGCGTATGCGGGGAGAAC,GGATCACCCCCGCGTATGCGGGGAGAAC	28,28,28	0	0	NA	NA	I-C,I-E,II-B:I-C,I-E,II-B:I-C,I-E,II-B	95,95,94	95	TypeI-E	csa3,cas3,WYL,DinG,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,csb1gr7,csb2gr5,csb3	NA|129aa|up_6|NZ_LT576032.1_2070517_2070904_+,NA	NA|584aa|up_9|NZ_LT576032.1_2065716_2067468_+	pfam05977, MFS_3, Transmembrane secretion effector	NA|493aa|up_8|NZ_LT576032.1_2067665_2069144_-	pfam13520, AA_permease_2, Amino acid permease	NA|322aa|up_7|NZ_LT576032.1_2069386_2070352_+	cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate	NA|129aa|up_6|NZ_LT576032.1_2070517_2070904_+	NA	NA|711aa|up_5|NZ_LT576032.1_2070900_2073033_-	PRK02983, lysS, bifunctional lysylphosphatidylglycerol synthetase/lysine--tRNA ligase LysX	NA|648aa|up_4|NZ_LT576032.1_2073096_2075040_-	cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|425aa|up_3|NZ_LT576032.1_2075126_2076401_-	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|329aa|up_2|NZ_LT576032.1_2076569_2077556_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|1051aa|up_1|NZ_LT576032.1_2077682_2080835_-	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|402aa|up_0|NZ_LT576032.1_2081282_2082487_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|115aa|down_0|NZ_LT576032.1_2088431_2088776_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|315aa|down_1|NZ_LT576032.1_2088772_2089717_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|223aa|down_2|NZ_LT576032.1_2089730_2090399_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|231aa|down_3|NZ_LT576032.1_2090398_2091091_-	pfam09704, Cas_Cas5d, CRISPR-associated protein (Cas_Cas5)	cas7|369aa|down_4|NZ_LT576032.1_2091087_2092194_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|242aa|down_5|NZ_LT576032.1_2092239_2092965_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|551aa|down_6|NZ_LT576032.1_2092961_2094614_-	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cas3|966aa|down_7|NZ_LT576032.1_2094610_2097508_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|205aa|down_8|NZ_LT576032.1_2097612_2098227_-	PRK00076, recR, recombination protein RecR; Reviewed	NA|103aa|down_9|NZ_LT576032.1_2098228_2098537_-	pfam02575, YbaB_DNA_bd, YbaB/EbfC DNA-binding family
GCF_900087025.1_PFRJS2	NZ_LT576032	Propionibacterium freudenreichii isolate PFRJS2 chromosome I	3	2120759-2122610	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	csb1gr7,csb2gr5,cas3,csb3,cas1,cas2	csa3,cas3,WYL,DinG,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,csb1gr7,csb2gr5,csb3	Unclear	ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC,ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC,ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC	36,36,36	0	0	NA	NA	NA:NA:NA	25,25,25	25	Unclear	csa3,cas3,WYL,DinG,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,csb1gr7,csb2gr5,csb3	NA|432aa|up_9|NZ_LT576032.1_2107312_2108608_-,NA|169aa|down_0|NZ_LT576032.1_2123211_2123718_+,NA|172aa|down_1|NZ_LT576032.1_2123752_2124268_-,NA|80aa|down_4|NZ_LT576032.1_2126850_2127090_-,NA|92aa|down_6|NZ_LT576032.1_2128389_2128665_+,NA|100aa|down_9|NZ_LT576032.1_2133778_2134078_-	NA|432aa|up_9|NZ_LT576032.1_2107312_2108608_-	NA	NA|362aa|up_8|NZ_LT576032.1_2108682_2109768_-	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|96aa|up_7|NZ_LT576032.1_2109773_2110061_-	pfam10006, DUF2249, Uncharacterized conserved protein (DUF2249)	NA|425aa|up_6|NZ_LT576032.1_2110534_2111809_-	PRK08639, PRK08639, threonine dehydratase; Validated	csb1gr7|400aa|up_5|NZ_LT576032.1_2112337_2113537_+	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053)	csb2gr5|514aa|up_4|NZ_LT576032.1_2113538_2115080_+	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system	cas3|872aa|up_3|NZ_LT576032.1_2115076_2117692_+	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc	csb3|334aa|up_2|NZ_LT576032.1_2117688_2118690_+	cd09764, Csb3_I-U, CRISPR/Cas system-associated RAMP superfamily protein Csb3	cas1|534aa|up_1|NZ_LT576032.1_2118679_2120281_+	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|101aa|up_0|NZ_LT576032.1_2120277_2120580_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|169aa|down_0|NZ_LT576032.1_2123211_2123718_+	NA	NA|172aa|down_1|NZ_LT576032.1_2123752_2124268_-	NA	NA|409aa|down_2|NZ_LT576032.1_2124438_2125665_-	PRK06849, PRK06849, hypothetical protein; Provisional	NA|352aa|down_3|NZ_LT576032.1_2125683_2126739_-	cd08252, AL_MDR, Arginate lyase and other MDR family members	NA|80aa|down_4|NZ_LT576032.1_2126850_2127090_-	NA	NA|250aa|down_5|NZ_LT576032.1_2127182_2127932_-	pfam07510, DUF1524, Protein of unknown function (DUF1524)	NA|92aa|down_6|NZ_LT576032.1_2128389_2128665_+	NA	NA|439aa|down_7|NZ_LT576032.1_2129061_2130378_+	PRK12489, PRK12489, anaerobic C4-dicarboxylate transporter; Reviewed	NA|1047aa|down_8|NZ_LT576032.1_2130637_2133778_+	cd09203, PLDc_N_DEXD_b1, N-terminal putative catalytic domain of uncharacterized prokaryotic and archeal HKD family nucleases fused to a DEAD/DEAH box helicase domain	NA|100aa|down_9|NZ_LT576032.1_2133778_2134078_-	NA
GCF_900087025.1_PFRJS2	NZ_LT576032	Propionibacterium freudenreichii isolate PFRJS2 chromosome I	4	2187917-2188023	4	CRISPRCasFinder	no	csa3	csa3,cas3,WYL,DinG,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,csb1gr7,csb2gr5,csb3	Type I-A	GGCGCGGTCGATTTTCTGCCGGGTGATCTGCGGCGG	36	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DinG,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,csb1gr7,csb2gr5,csb3	NA|108aa|up_7|NZ_LT576032.1_2176626_2176950_+,NA|377aa|up_0|NZ_LT576032.1_2186620_2187751_-,NA|130aa|down_4|NZ_LT576032.1_2194788_2195178_-,NA|55aa|down_6|NZ_LT576032.1_2195963_2196128_-	NA|78aa|up_9|NZ_LT576032.1_2173668_2173902_+	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones	NA|656aa|up_8|NZ_LT576032.1_2173988_2175956_+	cd02079, P-type_ATPase_HM, P-type heavy metal-transporting ATPase	NA|108aa|up_7|NZ_LT576032.1_2176626_2176950_+	NA	NA|264aa|up_6|NZ_LT576032.1_2177015_2177807_+	pfam13683, rve_3, Integrase core domain	NA|318aa|up_5|NZ_LT576032.1_2177768_2178722_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|1023aa|up_4|NZ_LT576032.1_2179070_2182139_+	PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha; Reviewed	NA|463aa|up_3|NZ_LT576032.1_2182161_2183550_+	COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]	NA|332aa|up_2|NZ_LT576032.1_2183595_2184591_+	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs	NA|436aa|up_1|NZ_LT576032.1_2184833_2186141_+	pfam01610, DDE_Tnp_ISL3, Transposase	NA|377aa|up_0|NZ_LT576032.1_2186620_2187751_-	NA	NA|674aa|down_0|NZ_LT576032.1_2189233_2191255_+	pfam13175, AAA_15, AAA ATPase domain	NA|186aa|down_1|NZ_LT576032.1_2193256_2193814_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|79aa|down_2|NZ_LT576032.1_2193826_2194063_+	pfam00892, EamA, EamA-like transporter family	NA|215aa|down_3|NZ_LT576032.1_2194147_2194792_-	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|130aa|down_4|NZ_LT576032.1_2194788_2195178_-	NA	NA|176aa|down_5|NZ_LT576032.1_2195321_2195849_+	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism]	NA|55aa|down_6|NZ_LT576032.1_2195963_2196128_-	NA	NA|114aa|down_7|NZ_LT576032.1_2196128_2196470_-	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|466aa|down_8|NZ_LT576032.1_2196459_2197857_-	pfam13166, AAA_13, AAA domain	NA|145aa|down_9|NZ_LT576032.1_2197948_2198383_+	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit
