The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT576032	Propionibacterium freudenreichii isolate PFRJS2 chromosome I	2655351	133260	149188	2655351	transposase,integrase	Mycobacterium_phage(33.33%)	14	141206:141265	156734:158169
WP_013162114.1|133260_134568_+|transposase	ISL3-like element ISPfr6 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	73.0	1.8e-188
WP_013162107.1|135609_136191_-	recombinase family protein	NA	A0A219YA40	Aeromonas_phage	37.4	7.7e-19
WP_013162108.1|136187_136967_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA	NA
WP_013162109.1|136963_137296_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041704881.1|137664_138138_+	Hsp20 family protein	NA	NA	NA	NA	NA
WP_041704882.1|138396_138855_+	Hsp20/alpha crystallin family protein	NA	NA	NA	NA	NA
WP_080516165.1|139011_140979_-	KUP/HAK/KT family potassium transporter	NA	A7K9V6	Acanthocystis_turfacea_chlorella_virus	31.2	6.3e-73
141206:141265	attL	GGCTCATCATAATCCACGGTGTAGCTGAGGTCTGAACCCGCCGGTTTCGAGGAGGGATCT	NA	NA	NA	NA
WP_013162114.1|141211_142519_-|transposase	ISL3-like element ISPfr6 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	73.0	1.8e-188
WP_027587610.1|144185_144734_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013162088.1|145129_146287_+|transposase	IS30-like element ISPfr16 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.9	1.2e-42
WP_027587608.1|146248_146557_-|transposase	transposase	transposase	A0A1B3AZF8	Gordonia_phage	59.1	3.5e-23
WP_013162090.1|146562_146739_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_171035545.1|147012_147312_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013162093.1|148663_149188_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
156734:158169	attR	AGATCCCTCCTCGAAACCGGCGGGTTCAGACCTCAGCTACACCGTGGATTATGATGAGCCGGTATTCACAGATGCCCATCGTGCGCTCTGTCAGGCACAAGCCGGGTCAGGCCGCTTCGCCGGCGGAGGCTGCGTCCCATCCCTCAAAGATGATGGATCCCCAGTGGAGGCAGGGGTACCGGCTCGTTGCCGAAAACGGCCTCTTGTTCGATCTGCAGGTTGCCTGGTGGCACATGCGGGAGGCCGTGGACCTCGCGCGCAGCTACCCGCAGCAAACCATCATCGTCAACCACGCGGCGCTTCCGTCGGACAGGTCCCCGGAGATGATGCAGGGCTGGAGCAGGGCCGTCCACGAGCTTGCGGCGTGTCAGAACACCGTGATGAAGATCTCGGGCATCGGGTTGCCGAGCGTGCCGTGGCGGGCGGAGAACAACCGACTGATCGTGGAGACGCTGTTCGAGGCTTTCGGATCCCAACGAATCATGTTCGCTTCGAACTTCCCGGTGGACTCCCTGTGCGGATCCTATGACGACATCTTCGGAGGATTCCTGGAGATCTCCCGGGACTGGTCTCCCGATGAACAGAGCGATGCATTCATCGGGACCGCGGTGAGGACGTATGGGCTCGAAGAATCGTTGCTGTCGCGGGTGGCAGCCCCCGCCCGGGCGTATGGCACCGAAACTTCGAGGCCGTGAGCCATTGAACACATGATCCCGATGGGGCCACGGATTGTGGCCCACGCGTCGGGAACGCATCAATTCCCACAAGACCAACAGGTCGGACCATTGGCGGTTCGGCTCCCTCTCATCCAGCAATGACGCTTTGAGGTGAAACATGAATACATCGAACGCACAGGAGCTGCCGCGCGCAGTTGACCTATCAATGTTGATCGAGCCACATTGGCGCTTCGGCCCCGAGTTCGGGGAGAAGGAGCTGGAAAAACCCCACTTCACCTTCCACTCAACCCTCCTGCGCATGGCTGCCCACGCCTTTTCGCATTGCGACGCGCCGTTCCATGTATCACCCGACATGGAGACCATCGACGAGATGGGCCTGGACAGGTTCTTTGGTCCGGCGCGGATGGTCGATGTCTCGGGACACGGGGATCGGGCCGCGCTGGGGGAGAAGGAGCTGAGGGAGGGCGGAGCCGCAGCGCTTCAGCCGGGAGAAATCGCCCTGATCAGGTCTGACCACGAGCTGCGACACCCGACGACCACCCCCCAGTACTGGGTTGATTCGCCGTGGATCACTGCCGGGGAAGCTCGCTTCCTCCTGGACTGCGGAATCAAGGCAGTGGGATTCGACTTCCCCCAGGACCGGGGAATTCGCGAGGACTACGACCCTGATTTCGTGCCGAGCACTGACCCGGTCGAGGACTGGGCCTGTCACTCCGTCCTCCTGACCCAGGGGGTGGTTCAGATCGAATACCTCTGCAA	NA	NA	NA	NA
>prophage 2
NZ_LT576032	Propionibacterium freudenreichii isolate PFRJS2 chromosome I	2655351	2156494	2218203	2655351	transposase,integrase	Mycobacterium_phage(21.43%)	49	2146576:2146597	2217901:2217922
2146576:2146597	attL	GGACACCACGGCCGCCGCGCCG	NA	NA	NA	NA
WP_048769680.1|2156494_2158162_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_048769681.1|2158687_2159170_+	hypothetical protein	NA	NA	NA	NA	NA
WP_044657640.1|2159352_2160159_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_060762478.1|2160158_2161544_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_044657638.1|2161551_2162148_-	recombinase family protein	NA	A0A219YB42	Aeromonas_phage	45.1	2.5e-33
WP_019289537.1|2162490_2163030_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044657637.1|2163133_2163868_-	VIT family protein	NA	NA	NA	NA	NA
WP_097780745.1|2164118_2165432_+	ferric reductase-like transmembrane domain-containing protein	NA	NA	NA	NA	NA
WP_055345761.1|2165428_2165935_+	FMN-binding protein	NA	NA	NA	NA	NA
WP_050993491.1|2165961_2166696_+	FAD:protein FMN transferase	NA	NA	NA	NA	NA
WP_019289542.1|2166731_2167400_+	response regulator	NA	W8CYM9	Bacillus_phage	34.1	3.5e-23
WP_019289543.1|2167396_2168650_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_055345763.1|2169978_2170344_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_048769684.1|2170633_2171218_+	recombinase family protein	NA	M9Q1K0	Clostridium_phage	44.8	9.7e-30
WP_036940446.1|2172828_2173512_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_048769847.1|2173668_2173902_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_036940452.1|2173988_2175956_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	39.0	3.3e-106
WP_171035501.1|2176626_2176950_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060762127.1|2177015_2177807_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_080516180.1|2177768_2178722_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_036942789.1|2179070_2182139_+	DUF4981 domain-containing protein	NA	L0N6M2	Herpes_simplex_virus	32.8	2.1e-139
WP_036942786.1|2182161_2183550_+	MFS transporter	NA	NA	NA	NA	NA
WP_013160161.1|2183595_2184591_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	33.2	1.6e-40
WP_048768940.1|2184833_2186141_+|transposase	ISL3-like element ISPfr4 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	77.2	3.3e-195
WP_057374556.1|2186620_2187751_-	hypothetical protein	NA	NA	NA	NA	NA
WP_048769768.1|2189233_2191255_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_048769774.1|2193256_2193814_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138427927.1|2193826_2194063_+	EamA family transporter	NA	NA	NA	NA	NA
WP_055344186.1|2194147_2194792_-	VWA domain-containing protein	NA	A0A2D1AE37	Rhodococcus_phage	45.1	3.0e-40
WP_027588231.1|2194788_2195178_-	hypothetical protein	NA	NA	NA	NA	NA
WP_027588232.1|2195321_2195849_+	dihydrofolate reductase family protein	NA	NA	NA	NA	NA
WP_157764637.1|2195963_2196128_-	hypothetical protein	NA	NA	NA	NA	NA
WP_097780656.1|2196128_2196470_-	hypothetical protein	NA	NA	NA	NA	NA
WP_053085387.1|2196459_2197857_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_048769789.1|2197948_2198383_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A2H4J538	uncultured_Caudovirales_phage	47.6	1.9e-22
WP_048769781.1|2198358_2199678_+	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	42.8	5.3e-76
WP_013161963.1|2199759_2200170_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013161964.1|2200166_2200391_-	hypothetical protein	NA	NA	NA	NA	NA
WP_097780657.1|2200615_2202490_+	toprim domain-containing protein	NA	A0A2H4PDF8	Mycobacterium_phage	68.8	4.3e-63
WP_044658394.1|2202648_2204067_+|transposase	IS30-like element ISPfr9 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.3	3.5e-33
WP_028701541.1|2204216_2205572_+	FAD-dependent oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	42.6	6.0e-91
WP_097780658.1|2207660_2209394_+	AIPR family protein	NA	NA	NA	NA	NA
WP_013350246.1|2210350_2210689_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_048769063.1|2210685_2211315_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013162142.1|2212985_2213726_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_044657715.1|2213748_2214669_-	oxidoreductase	NA	NA	NA	NA	NA
WP_048768937.1|2214692_2215577_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_013162139.1|2215576_2216437_+	EamA family transporter	NA	NA	NA	NA	NA
WP_097780659.1|2216895_2218203_-|transposase	ISL3-like element ISPfr1 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	68.1	1.8e-169
2217901:2217922	attR	CGGCGCGGCGGCCGTGGTGTCC	NA	NA	NA	NA
>prophage 3
NZ_LT576032	Propionibacterium freudenreichii isolate PFRJS2 chromosome I	2655351	2559595	2611288	2655351	transposase	Staphylococcus_phage(33.33%)	39	NA	NA
WP_144406054.1|2559595_2560795_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.2	7.3e-32
WP_044635816.1|2561666_2562701_-|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_157764652.1|2563193_2563595_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_044635816.1|2563635_2564670_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_097780703.1|2564860_2565775_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_044636817.1|2565997_2566999_+|transposase	IS481-like element ISPfr17 family transposase	transposase	NA	NA	NA	NA
WP_097780754.1|2566902_2567679_+	WYL domain-containing protein	NA	NA	NA	NA	NA
WP_097780704.1|2567820_2570373_+	relaxase domain-containing protein	NA	NA	NA	NA	NA
WP_097780705.1|2570429_2572007_+	recombinase family protein	NA	A0A2R4APX0	Mycobacterium_phage	27.9	2.5e-24
WP_157764653.1|2572056_2572275_-	hypothetical protein	NA	NA	NA	NA	NA
WP_097780706.1|2572330_2573191_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_097780707.1|2573531_2574260_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_097780708.1|2574256_2574778_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_097780709.1|2574893_2575892_+	NADP-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_097780755.1|2576163_2579742_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_097780710.1|2579843_2581283_+	toll/interleukin-1 receptor domain-containing protein	NA	S6BFN8	Thermus_phage	44.4	2.2e-27
WP_172952165.1|2582715_2583051_-	DNA-processing protein DprA	NA	NA	NA	NA	NA
WP_172952166.1|2582965_2583514_-	DNA-processing protein DprA	NA	NA	NA	NA	NA
WP_157764654.1|2584263_2584884_+	hypothetical protein	NA	S4VW41	Pandoravirus	34.2	1.2e-09
WP_157764655.1|2584984_2587597_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_097780713.1|2587757_2588120_+	sulfate permease	NA	NA	NA	NA	NA
WP_097780756.1|2588108_2588453_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080774578.1|2588895_2589195_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044636511.1|2589092_2590097_-	low temperature requirement protein A	NA	NA	NA	NA	NA
WP_097780714.1|2590507_2591542_-|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_097780715.1|2591626_2591809_+	hypothetical protein	NA	NA	NA	NA	NA
WP_044636931.1|2591909_2593124_-	cytochrome P450	NA	NA	NA	NA	NA
WP_044636513.1|2593456_2594311_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	33.6	7.3e-42
WP_097780716.1|2594518_2595508_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060762238.1|2595703_2597446_-	glycoside hydrolase family 13 protein	NA	NA	NA	NA	NA
WP_138427934.1|2597508_2598123_-	hypothetical protein	NA	NA	NA	NA	NA
WP_048735328.1|2598538_2600485_+	purine/pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	26.9	4.3e-21
WP_013162204.1|2600584_2601586_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_013162205.1|2602064_2603732_+	AMP-binding protein	NA	A0A2H4PQM9	Staphylococcus_phage	27.1	1.1e-22
WP_157764656.1|2604285_2604615_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013162207.1|2604734_2606183_-	catalase	NA	A0A2K9L572	Tupanvirus	41.3	2.7e-89
WP_097780718.1|2606287_2607205_-	Dyp-type peroxidase	NA	NA	NA	NA	NA
WP_157764657.1|2607822_2609775_+	AarF/ABC1/UbiB kinase family protein	NA	E5ERK4	Ostreococcus_lucimarinus_virus	31.6	1.6e-20
WP_036941495.1|2610082_2611288_+|transposase	IS481-like element ISPfr5 family transposase	transposase	NA	NA	NA	NA
