assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900086925.1_PFRJS4	NZ_LT576033	Propionibacterium freudenreichii isolate PFRJS4 chromosome I	1	1818598-1819215	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,csb3,cas3,csb2gr5	csa3,DEDDh,cas3,WYL,DinG,cas2,cas1,csb3,csb2gr5	Unclear	GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT,GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT,GCCTCAATGAAGGGCCCCTCCAGAAAGGAGGGGCAAT	36,36,37	0	0	NA	NA	NA:NA:NA	8,8,8	8	Unclear	csa3,DEDDh,cas3,WYL,DinG,cas2,cas1,csb3,csb2gr5	NA|100aa|up_8|NZ_LT576033.1_1807131_1807431_+,NA|87aa|up_5|NZ_LT576033.1_1812544_1812805_-,NA|80aa|up_3|NZ_LT576033.1_1814119_1814359_+,NA|172aa|up_1|NZ_LT576033.1_1816939_1817455_+,NA|169aa|up_0|NZ_LT576033.1_1817489_1817996_-,NA|140aa|down_9|NZ_LT576033.1_1839249_1839669_-	NA|334aa|up_9|NZ_LT576033.1_1805848_1806850_-	pfam13683, rve_3, Integrase core domain	NA|100aa|up_8|NZ_LT576033.1_1807131_1807431_+	NA	NA|960aa|up_7|NZ_LT576033.1_1807431_1810311_-	cd09203, PLDc_N_DEXD_b1, N-terminal putative catalytic domain of uncharacterized prokaryotic and archeal HKD family nucleases fused to a DEAD/DEAH box helicase domain	NA|439aa|up_6|NZ_LT576033.1_1810831_1812148_-	PRK12489, PRK12489, anaerobic C4-dicarboxylate transporter; Reviewed	NA|87aa|up_5|NZ_LT576033.1_1812544_1812805_-	NA	NA|250aa|up_4|NZ_LT576033.1_1813277_1814027_+	pfam07510, DUF1524, Protein of unknown function (DUF1524)	NA|80aa|up_3|NZ_LT576033.1_1814119_1814359_+	NA	NA|409aa|up_2|NZ_LT576033.1_1815542_1816769_+	PRK06849, PRK06849, hypothetical protein; Provisional	NA|172aa|up_1|NZ_LT576033.1_1816939_1817455_+	NA	NA|169aa|up_0|NZ_LT576033.1_1817489_1817996_-	NA	NA|436aa|down_0|NZ_LT576033.1_1819338_1820646_+	pfam01610, DDE_Tnp_ISL3, Transposase	NA|434aa|down_1|NZ_LT576033.1_1823840_1825142_+	pfam01610, DDE_Tnp_ISL3, Transposase	cas2|101aa|down_2|NZ_LT576033.1_1827924_1828227_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|534aa|down_3|NZ_LT576033.1_1828223_1829825_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	csb3|333aa|down_4|NZ_LT576033.1_1829814_1830813_-	cd09764, Csb3_I-U, CRISPR/Cas system-associated RAMP superfamily protein Csb3	cas3|871aa|down_5|NZ_LT576033.1_1830809_1833422_-	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc	csb2gr5|514aa|down_6|NZ_LT576033.1_1833418_1834960_-	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system	NA|425aa|down_7|NZ_LT576033.1_1836692_1837967_+	PRK08639, PRK08639, threonine dehydratase; Validated	NA|334aa|down_8|NZ_LT576033.1_1838064_1839066_+	pfam13683, rve_3, Integrase core domain	NA|140aa|down_9|NZ_LT576033.1_1839249_1839669_-	NA
GCF_900086925.1_PFRJS4	NZ_LT576033	Propionibacterium freudenreichii isolate PFRJS4 chromosome I	2	1823162-1823697	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csb3,cas3,csb2gr5	csa3,DEDDh,cas3,WYL,DinG,cas2,cas1,csb3,csb2gr5	Unclear	GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT,GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT,GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	36,36,36	0	0	NA	NA	NA:NA:NA	7,7,6	7	Unclear	csa3,DEDDh,cas3,WYL,DinG,cas2,cas1,csb3,csb2gr5	NA|100aa|up_9|NZ_LT576033.1_1807131_1807431_+,NA|87aa|up_6|NZ_LT576033.1_1812544_1812805_-,NA|80aa|up_4|NZ_LT576033.1_1814119_1814359_+,NA|172aa|up_2|NZ_LT576033.1_1816939_1817455_+,NA|169aa|up_1|NZ_LT576033.1_1817489_1817996_-,NA|140aa|down_8|NZ_LT576033.1_1839249_1839669_-,NA|48aa|down_9|NZ_LT576033.1_1840094_1840238_+	NA|100aa|up_9|NZ_LT576033.1_1807131_1807431_+	NA	NA|960aa|up_8|NZ_LT576033.1_1807431_1810311_-	cd09203, PLDc_N_DEXD_b1, N-terminal putative catalytic domain of uncharacterized prokaryotic and archeal HKD family nucleases fused to a DEAD/DEAH box helicase domain	NA|439aa|up_7|NZ_LT576033.1_1810831_1812148_-	PRK12489, PRK12489, anaerobic C4-dicarboxylate transporter; Reviewed	NA|87aa|up_6|NZ_LT576033.1_1812544_1812805_-	NA	NA|250aa|up_5|NZ_LT576033.1_1813277_1814027_+	pfam07510, DUF1524, Protein of unknown function (DUF1524)	NA|80aa|up_4|NZ_LT576033.1_1814119_1814359_+	NA	NA|409aa|up_3|NZ_LT576033.1_1815542_1816769_+	PRK06849, PRK06849, hypothetical protein; Provisional	NA|172aa|up_2|NZ_LT576033.1_1816939_1817455_+	NA	NA|169aa|up_1|NZ_LT576033.1_1817489_1817996_-	NA	NA|436aa|up_0|NZ_LT576033.1_1819338_1820646_+	pfam01610, DDE_Tnp_ISL3, Transposase	NA|434aa|down_0|NZ_LT576033.1_1823840_1825142_+	pfam01610, DDE_Tnp_ISL3, Transposase	cas2|101aa|down_1|NZ_LT576033.1_1827924_1828227_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|534aa|down_2|NZ_LT576033.1_1828223_1829825_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	csb3|333aa|down_3|NZ_LT576033.1_1829814_1830813_-	cd09764, Csb3_I-U, CRISPR/Cas system-associated RAMP superfamily protein Csb3	cas3|871aa|down_4|NZ_LT576033.1_1830809_1833422_-	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc	csb2gr5|514aa|down_5|NZ_LT576033.1_1833418_1834960_-	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system	NA|425aa|down_6|NZ_LT576033.1_1836692_1837967_+	PRK08639, PRK08639, threonine dehydratase; Validated	NA|334aa|down_7|NZ_LT576033.1_1838064_1839066_+	pfam13683, rve_3, Integrase core domain	NA|140aa|down_8|NZ_LT576033.1_1839249_1839669_-	NA	NA|48aa|down_9|NZ_LT576033.1_1840094_1840238_+	NA
GCF_900086925.1_PFRJS4	NZ_LT576033	Propionibacterium freudenreichii isolate PFRJS4 chromosome I	3	1825170-1827746	3,3,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csb3,cas3,csb2gr5	csa3,DEDDh,cas3,WYL,DinG,cas2,cas1,csb3,csb2gr5	Unclear	GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT,GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT,GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	36,36,36	0	0	NA	NA	NA:NA:NA	35,35,34	35	Unclear	csa3,DEDDh,cas3,WYL,DinG,cas2,cas1,csb3,csb2gr5	NA|87aa|up_7|NZ_LT576033.1_1812544_1812805_-,NA|80aa|up_5|NZ_LT576033.1_1814119_1814359_+,NA|172aa|up_3|NZ_LT576033.1_1816939_1817455_+,NA|169aa|up_2|NZ_LT576033.1_1817489_1817996_-,NA|140aa|down_7|NZ_LT576033.1_1839249_1839669_-,NA|48aa|down_8|NZ_LT576033.1_1840094_1840238_+,NA|105aa|down_9|NZ_LT576033.1_1840470_1840785_+	NA|960aa|up_9|NZ_LT576033.1_1807431_1810311_-	cd09203, PLDc_N_DEXD_b1, N-terminal putative catalytic domain of uncharacterized prokaryotic and archeal HKD family nucleases fused to a DEAD/DEAH box helicase domain	NA|439aa|up_8|NZ_LT576033.1_1810831_1812148_-	PRK12489, PRK12489, anaerobic C4-dicarboxylate transporter; Reviewed	NA|87aa|up_7|NZ_LT576033.1_1812544_1812805_-	NA	NA|250aa|up_6|NZ_LT576033.1_1813277_1814027_+	pfam07510, DUF1524, Protein of unknown function (DUF1524)	NA|80aa|up_5|NZ_LT576033.1_1814119_1814359_+	NA	NA|409aa|up_4|NZ_LT576033.1_1815542_1816769_+	PRK06849, PRK06849, hypothetical protein; Provisional	NA|172aa|up_3|NZ_LT576033.1_1816939_1817455_+	NA	NA|169aa|up_2|NZ_LT576033.1_1817489_1817996_-	NA	NA|436aa|up_1|NZ_LT576033.1_1819338_1820646_+	pfam01610, DDE_Tnp_ISL3, Transposase	NA|434aa|up_0|NZ_LT576033.1_1823840_1825142_+	pfam01610, DDE_Tnp_ISL3, Transposase	cas2|101aa|down_0|NZ_LT576033.1_1827924_1828227_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|534aa|down_1|NZ_LT576033.1_1828223_1829825_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	csb3|333aa|down_2|NZ_LT576033.1_1829814_1830813_-	cd09764, Csb3_I-U, CRISPR/Cas system-associated RAMP superfamily protein Csb3	cas3|871aa|down_3|NZ_LT576033.1_1830809_1833422_-	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc	csb2gr5|514aa|down_4|NZ_LT576033.1_1833418_1834960_-	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system	NA|425aa|down_5|NZ_LT576033.1_1836692_1837967_+	PRK08639, PRK08639, threonine dehydratase; Validated	NA|334aa|down_6|NZ_LT576033.1_1838064_1839066_+	pfam13683, rve_3, Integrase core domain	NA|140aa|down_7|NZ_LT576033.1_1839249_1839669_-	NA	NA|48aa|down_8|NZ_LT576033.1_1840094_1840238_+	NA	NA|105aa|down_9|NZ_LT576033.1_1840470_1840785_+	NA
GCF_900086925.1_PFRJS4	NZ_LT576033	Propionibacterium freudenreichii isolate PFRJS4 chromosome I	4	2248665-2248829	4	CRISPRCasFinder	no		csa3,DEDDh,cas3,WYL,DinG,cas2,cas1,csb3,csb2gr5	Orphan	CTTCTTCGCCGCCGGCTTCTTGGC	24	0	0	NA	NA	NA	3	3	Orphan	csa3,DEDDh,cas3,WYL,DinG,cas2,cas1,csb3,csb2gr5	NA|482aa|up_0|NZ_LT576033.1_2247151_2248597_-,NA|101aa|down_3|NZ_LT576033.1_2259962_2260265_+,NA|81aa|down_6|NZ_LT576033.1_2262877_2263120_+,NA|153aa|down_8|NZ_LT576033.1_2263709_2264168_-	NA|454aa|up_9|NZ_LT576033.1_2233455_2234817_+	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism]	NA|113aa|up_8|NZ_LT576033.1_2234813_2235152_+	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism]	NA|446aa|up_7|NZ_LT576033.1_2235961_2237299_-	pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase	NA|484aa|up_6|NZ_LT576033.1_2237492_2238944_-	PRK11049, PRK11049, D-alanine/D-serine/glycine permease; Provisional	NA|505aa|up_5|NZ_LT576033.1_2239208_2240723_+	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|281aa|up_4|NZ_LT576033.1_2240722_2241565_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|350aa|up_3|NZ_LT576033.1_2241872_2242922_-	COG1774, COG1774, Uncharacterized homolog of PSP1 [Function unknown]	NA|355aa|up_2|NZ_LT576033.1_2243051_2244116_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|438aa|up_1|NZ_LT576033.1_2244877_2246191_-	PRK07940, PRK07940, DNA polymerase III subunit delta'; Validated	NA|482aa|up_0|NZ_LT576033.1_2247151_2248597_-	NA	NA|506aa|down_0|NZ_LT576033.1_2251834_2253352_-	pfam05175, MTS, Methyltransferase small domain	NA|335aa|down_1|NZ_LT576033.1_2256059_2257064_-	COG3302, DmsC, DMSO reductase anchor subunit [General function prediction only]	NA|215aa|down_2|NZ_LT576033.1_2257063_2257708_-	TIGR02951, anaerobic_dimethyl_sulfoxide_reductase_subunit_B, DMSO reductase, iron-sulfur subunit	NA|101aa|down_3|NZ_LT576033.1_2259962_2260265_+	NA	NA|404aa|down_4|NZ_LT576033.1_2260457_2261669_-	COG1145, NapF, Ferredoxin [Energy production and conversion]	NA|294aa|down_5|NZ_LT576033.1_2261884_2262766_-	pfam02613, Nitrate_red_del, Nitrate reductase delta subunit	NA|81aa|down_6|NZ_LT576033.1_2262877_2263120_+	NA	NA|111aa|down_7|NZ_LT576033.1_2263215_2263548_-	TIGR03816, tadE_like_DECH, helicase/secretion neighborhood TadE-like protein	NA|153aa|down_8|NZ_LT576033.1_2263709_2264168_-	NA	NA|96aa|down_9|NZ_LT576033.1_2264298_2264586_-	pfam14029, DUF4244, Protein of unknown function (DUF4244)
GCF_900086925.1_PFRJS4	NZ_LT576033	Propionibacterium freudenreichii isolate PFRJS4 chromosome I	5	2506497-2506604	5	CRISPRCasFinder	no		csa3,DEDDh,cas3,WYL,DinG,cas2,cas1,csb3,csb2gr5	Orphan	ACCTCGTTCCCGTGCTGGTGCCGGCGCTGTTGGTGGC	37	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,DinG,cas2,cas1,csb3,csb2gr5	NA,NA|52aa|down_8|NZ_LT576033.1_2520659_2520815_+	NA|231aa|up_9|NZ_LT576033.1_2493307_2494000_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|476aa|up_8|NZ_LT576033.1_2493996_2495424_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|416aa|up_7|NZ_LT576033.1_2495452_2496700_-	cd17393, MFS_MosC_like, Membrane protein MosC and similar proteins of the Major Facilitator Superfamily of transporters	NA|357aa|up_6|NZ_LT576033.1_2496699_2497770_-	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]	NA|259aa|up_5|NZ_LT576033.1_2498412_2499189_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|351aa|up_4|NZ_LT576033.1_2499279_2500332_-	COG0240, GpsA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]	NA|519aa|up_3|NZ_LT576033.1_2500384_2501941_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|477aa|up_2|NZ_LT576033.1_2502370_2503801_-	TIGR03942, sulfatase_rSAM, anaerobic sulfatase-maturating enzyme	NA|334aa|up_1|NZ_LT576033.1_2504424_2505426_+	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]	NA|336aa|up_0|NZ_LT576033.1_2505422_2506430_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|673aa|down_0|NZ_LT576033.1_2509843_2511862_+	COG2015, COG2015, Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]	NA|104aa|down_1|NZ_LT576033.1_2512649_2512961_+	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|451aa|down_2|NZ_LT576033.1_2513023_2514376_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|322aa|down_3|NZ_LT576033.1_2514722_2515688_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|318aa|down_4|NZ_LT576033.1_2516056_2517010_+	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase	NA|337aa|down_5|NZ_LT576033.1_2517063_2518074_+	TIGR04380, hypothetical_protein_HOLDEFILI_04020, inositol 2-dehydrogenase	NA|289aa|down_6|NZ_LT576033.1_2518293_2519160_+	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|345aa|down_7|NZ_LT576033.1_2519308_2520343_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|52aa|down_8|NZ_LT576033.1_2520659_2520815_+	NA	NA|313aa|down_9|NZ_LT576033.1_2520992_2521931_+	pfam12146, Hydrolase_4, Serine aminopeptidase, S33
