The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT576033	Propionibacterium freudenreichii isolate PFRJS4 chromosome I	2654663	13249	70235	2654663	transposase	Bacillus_virus(18.18%)	48	NA	NA
WP_157761531.1|13249_14251_-|transposase	IS481-like element ISPfr17 family transposase	transposase	NA	NA	NA	NA
WP_048733540.1|14395_15697_+	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
WP_080516173.1|16016_16472_+	DUF721 domain-containing protein	NA	NA	NA	NA	NA
WP_081014601.1|16724_18392_+	S-layer homology domain-containing protein	NA	NA	NA	NA	NA
WP_129931217.1|18634_19648_+	hypothetical protein	NA	NA	NA	NA	NA
WP_097776018.1|20125_22111_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	43.1	6.7e-131
WP_055343440.1|22244_24893_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	31.1	1.8e-99
WP_129931216.1|25114_25999_+	hypothetical protein	NA	NA	NA	NA	NA
WP_171035509.1|26129_26408_-	DUF1540 domain-containing protein	NA	NA	NA	NA	NA
WP_055343428.1|26645_27443_+	AmmeMemoRadiSam system protein B	NA	NA	NA	NA	NA
WP_013159948.1|27507_28080_+	AmmeMemoRadiSam system protein A	NA	NA	NA	NA	NA
WP_081014602.1|28076_29165_+	AmmeMemoRadiSam system radical SAM enzyme	NA	NA	NA	NA	NA
WP_013159950.1|29321_29840_+	DUF3566 domain-containing protein	NA	NA	NA	NA	NA
WP_013159951.1|30077_30524_+	YbjN domain-containing protein	NA	NA	NA	NA	NA
WP_013159952.1|30538_30997_+	YbjN domain-containing protein	NA	NA	NA	NA	NA
WP_129931209.1|31033_31456_-	hypothetical protein	NA	NA	NA	NA	NA
WP_048734422.1|31716_32499_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_157761827.1|32526_32901_+	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_036941495.1|32953_34159_+|transposase	IS481-like element ISPfr5 family transposase	transposase	NA	NA	NA	NA
WP_081014603.1|34512_35703_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_044635829.1|35719_37372_+	MFS transporter	NA	NA	NA	NA	NA
WP_041704332.1|37607_38264_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_080713532.1|38263_39766_-	sensor domain-containing protein	NA	NA	NA	NA	NA
WP_013159959.1|39967_41302_-	MFS transporter	NA	NA	NA	NA	NA
WP_013159960.1|41320_42532_-	amidohydrolase	NA	NA	NA	NA	NA
WP_080516174.1|43042_44710_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	23.8	9.9e-11
WP_044635831.1|44709_46677_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	21.1	2.7e-07
WP_055343429.1|46900_48016_+	alanine dehydrogenase	NA	NA	NA	NA	NA
WP_044657803.1|48383_49922_+	amino acid permease	NA	NA	NA	NA	NA
WP_080713533.1|50138_51338_-	L,D-transpeptidase family protein	NA	NA	NA	NA	NA
WP_081012785.1|51725_52013_+	acylphosphatase	NA	NA	NA	NA	NA
WP_055343431.1|52033_52294_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A2P1N333	Gordonia_phage	51.2	7.1e-17
WP_048734398.1|52290_52596_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_055343432.1|52725_53385_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	53.5	1.3e-25
WP_055343443.1|53508_54018_+	nitroreductase family protein	NA	NA	NA	NA	NA
WP_155489070.1|54078_55362_+	hypothetical protein	NA	NA	NA	NA	NA
WP_055343434.1|55358_56216_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_055343435.1|56220_57168_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
WP_081014604.1|57168_58263_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_055343444.1|58430_59300_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	K7QKA7	Escherichia_phage	58.3	7.1e-93
WP_055343436.1|59441_60212_+	glycosyltransferase family 2 protein	NA	V9QJB1	Oenococcus_phage	30.8	2.2e-05
WP_055343437.1|60208_60661_+	DUF2304 domain-containing protein	NA	NA	NA	NA	NA
WP_055343439.1|61623_62871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157761531.1|63061_64063_+|transposase	IS481-like element ISPfr17 family transposase	transposase	NA	NA	NA	NA
WP_044635816.1|64333_65368_-|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_055346098.1|65973_67281_-|transposase	ISL3 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	71.0	5.5e-182
WP_097776140.1|67734_68884_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	37.6	2.7e-39
WP_155489102.1|68924_70235_-|transposase	ISL3 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	77.0	3.9e-196
>prophage 2
NZ_LT576033	Propionibacterium freudenreichii isolate PFRJS4 chromosome I	2654663	97991	164453	2654663	tRNA,transposase	Mycobacterium_phage(30.77%)	48	NA	NA
WP_097776142.1|97991_99302_-|transposase	ISL3-like element ISPfr18 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	69.6	1.7e-175
WP_013160219.1|99546_99963_-	hypothetical protein	NA	NA	NA	NA	NA
WP_063493944.1|100016_102269_-	DUF1906 domain-containing protein	NA	NA	NA	NA	NA
WP_048734242.1|104232_104742_+	hypothetical protein	NA	NA	NA	NA	NA
WP_026138135.1|105187_106513_+|transposase	ISL3-like element ISPfr2 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	77.0	3.6e-197
WP_138427876.1|107538_108552_+	hypothetical protein	NA	NA	NA	NA	NA
WP_097776020.1|108560_109241_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.5	8.4e-25
WP_036940993.1|109237_110386_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_052809046.1|110543_113798_-	DEAD/DEAH box helicase	NA	E4WLZ5	Ostreococcus_tauri_virus	29.4	2.4e-40
WP_044635816.1|114607_115642_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_055343542.1|115622_117359_+	S-layer homology domain-containing protein	NA	NA	NA	NA	NA
WP_036940996.1|117461_118181_+	hypothetical protein	NA	NA	NA	NA	NA
WP_036940999.1|118412_119216_+	deoxyribonuclease IV	NA	NA	NA	NA	NA
WP_097776143.1|119212_121354_+	AMP-binding protein	NA	A0A1V0SBX8	Catovirus	26.0	2.4e-49
WP_081014624.1|121257_122886_-	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_055343544.1|123031_123829_-	TIM barrel protein	NA	NA	NA	NA	NA
WP_048769427.1|124320_125343_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_055343545.1|125533_126106_+	isochorismatase family protein	NA	A0A2K9L2K0	Tupanvirus	34.6	2.7e-16
WP_081014625.1|126486_127506_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_112317763.1|127647_128553_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_055343547.1|128719_129631_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_013162124.1|129712_130693_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_097776254.1|130748_131522_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.1	2.5e-33
WP_157761829.1|132725_133265_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_055343551.1|133465_135577_-	NAD(+) synthase	NA	NA	NA	NA	NA
WP_013162120.1|135744_136938_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_172952082.1|137037_137487_+	ribose 5-phosphate isomerase B	NA	NA	NA	NA	NA
WP_036941015.1|137779_138790_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
WP_013162117.1|138795_140139_+	gluconate transporter	NA	NA	NA	NA	NA
WP_013162116.1|140252_141164_+	sugar phosphate isomerase/epimerase	NA	NA	NA	NA	NA
WP_157761830.1|141389_142415_+	MFS transporter	NA	NA	NA	NA	NA
WP_055346098.1|142397_143705_-|transposase	ISL3 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	71.0	5.5e-182
WP_055343632.1|143837_145145_-|transposase	ISL3-like element ISPfr1 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	67.8	3.1e-169
WP_080516026.1|145163_145916_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013160047.1|145918_146263_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_080516175.1|146900_147860_+	phosphopantothenoylcysteine decarboxylase	NA	Q9HH70	Methanothermobacter_phage	39.4	1.4e-25
WP_013160045.1|148058_149207_+	alanine racemase	NA	A0A0P0YM39	Yellowstone_lake_mimivirus	29.8	1.6e-31
WP_157761831.1|149228_150833_+	S8 family serine peptidase	NA	NA	NA	NA	NA
WP_055346839.1|151047_151881_+	SdpI family protein	NA	NA	NA	NA	NA
WP_044635866.1|151991_152795_-	EcsC family protein	NA	NA	NA	NA	NA
WP_044658309.1|153314_154619_+	citrate synthase	NA	NA	NA	NA	NA
WP_044635868.1|154829_155438_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A1J0GVU2	Streptomyces_phage	44.6	5.6e-28
WP_097776144.1|155752_157933_+	serine/threonine protein kinase	NA	A0A1M7XTW9	Cedratvirus	26.9	9.0e-12
WP_044658304.1|158408_159134_+|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
WP_013160037.1|159126_159990_+	Fpg/Nei family DNA glycosylase	NA	NA	NA	NA	NA
WP_055346843.1|160280_161816_+	gluconokinase	NA	NA	NA	NA	NA
WP_013160035.1|161993_162800_+	hypothetical protein	NA	NA	NA	NA	NA
WP_044635816.1|163418_164453_-|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_LT576033	Propionibacterium freudenreichii isolate PFRJS4 chromosome I	2654663	375715	434507	2654663	transposase	Mycobacterium_phage(30.0%)	50	NA	NA
WP_097776160.1|375715_376865_+|transposase	IS3-like element ISPfr10 family transposase	transposase	S5WIU1	Leptospira_phage	37.5	8.6e-38
WP_055343513.1|376980_377397_+	HNH endonuclease	NA	NA	NA	NA	NA
WP_097776158.1|377419_378646_+	hypothetical protein	NA	NA	NA	NA	NA
WP_097776257.1|378615_379890_+|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
WP_055343674.1|379932_381324_+	cobyrinate a,c-diamide synthase	NA	NA	NA	NA	NA
WP_157761835.1|381423_383157_-	hypothetical protein	NA	M1I5Z5	Acanthocystis_turfacea_Chlorella_virus	26.4	3.2e-12
WP_155489083.1|383196_383421_-	hypothetical protein	NA	NA	NA	NA	NA
WP_055343677.1|383558_384176_-	hypothetical protein	NA	A0A222YY48	Mycobacterium_phage	38.5	2.1e-14
WP_155489084.1|385411_385864_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081014655.1|387071_388469_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	34.7	9.1e-34
WP_155489087.1|389536_389701_+	hypothetical protein	NA	NA	NA	NA	NA
WP_055343690.1|389871_390420_+	antirestriction protein ArdA	NA	A0A1B1IVX9	uncultured_Mediterranean_phage	28.7	5.4e-14
WP_055343689.1|390438_390630_+	hypothetical protein	NA	NA	NA	NA	NA
WP_055343688.1|390626_390827_+	hypothetical protein	NA	NA	NA	NA	NA
WP_055343687.1|390810_391107_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_055343686.1|391217_391970_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155489086.1|392044_392560_-	hypothetical protein	NA	NA	NA	NA	NA
WP_055343684.1|392573_393842_-	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA	NA
WP_155489085.1|393838_394252_-	hypothetical protein	NA	NA	NA	NA	NA
WP_055343682.1|394422_394767_-	hypothetical protein	NA	NA	NA	NA	NA
WP_055343681.1|394996_395581_-	recombinase family protein	NA	M9Q1K0	Clostridium_phage	44.0	1.3e-26
WP_097776159.1|395752_397546_-	hypothetical protein	NA	NA	NA	NA	NA
WP_055343679.1|397770_398079_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_055343692.1|399507_401034_+	Abi family protein	NA	A3QSC6	Clostridium_virus	28.3	8.5e-25
WP_097776160.1|401772_402922_+|transposase	IS3-like element ISPfr10 family transposase	transposase	S5WIU1	Leptospira_phage	37.5	8.6e-38
WP_055346098.1|404783_406091_+|transposase	ISL3 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	71.0	5.5e-182
WP_080713568.1|406184_407048_+	Abi family protein	NA	NA	NA	NA	NA
WP_112317719.1|409901_410228_+	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
WP_013161551.1|410227_411337_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013161548.1|411430_412201_+	hypothetical protein	NA	NA	NA	NA	NA
WP_112317779.1|412164_413118_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_112317780.1|413206_414439_+	MFS transporter	NA	NA	NA	NA	NA
WP_013161545.1|414642_414846_+	hypothetical protein	NA	NA	NA	NA	NA
WP_055343411.1|414845_415541_+	DsbA family oxidoreductase	NA	NA	NA	NA	NA
WP_081014599.1|416035_416986_+	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
WP_044636275.1|417064_417331_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_013161529.1|417309_417969_-	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA	NA
WP_013161528.1|418057_419590_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_055343410.1|419586_421272_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_013161526.1|421456_422500_+	arsenic resistance protein	NA	NA	NA	NA	NA
WP_013161525.1|422582_423746_-	putative sulfate exporter family transporter	NA	NA	NA	NA	NA
WP_013161524.1|423742_423916_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013161523.1|424412_425060_-	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_097775792.1|425058_426489_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_013161521.1|426485_426719_+	sulfur carrier protein ThiS	NA	NA	NA	NA	NA
WP_013161520.1|426721_427552_+	thiazole synthase	NA	NA	NA	NA	NA
WP_013161518.1|428840_429923_-	putative sulfate exporter family transporter	NA	NA	NA	NA	NA
WP_013161517.1|429992_430913_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_013161516.1|430916_431132_-	YbdD/YjiX family protein	NA	NA	NA	NA	NA
WP_026138135.1|433181_434507_-|transposase	ISL3-like element ISPfr2 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	77.0	3.6e-197
>prophage 4
NZ_LT576033	Propionibacterium freudenreichii isolate PFRJS4 chromosome I	2654663	1255325	1323313	2654663	protease,integrase,capsid,tRNA	Streptococcus_phage(23.08%)	58	1250803:1250824	1330609:1330630
1250803:1250824	attL	CTGCAGCGCCTGGACGGCCTTG	NA	NA	NA	NA
WP_097776265.1|1255325_1256549_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	31.9	3.8e-52
WP_081012822.1|1256734_1258042_+	metallophosphoesterase family protein	NA	NA	NA	NA	NA
WP_055343805.1|1258030_1258780_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_013160783.1|1259996_1261007_-	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA	NA
WP_036939389.1|1261264_1262041_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_080516071.1|1262118_1263123_-	DUF3097 domain-containing protein	NA	NA	NA	NA	NA
WP_013160780.1|1263094_1264294_-	coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
WP_080516070.1|1264296_1266186_-	elongation factor 4	NA	A0A1B0RXH7	Streptococcus_phage	26.3	2.7e-20
WP_097776182.1|1266461_1266947_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013160776.1|1267335_1267596_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_055343802.1|1267729_1268392_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080774476.1|1268405_1269554_-	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_055343801.1|1269486_1271808_-	ComEC/Rec2 family competence protein	NA	NA	NA	NA	NA
WP_013160772.1|1271926_1272904_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_036939399.1|1273022_1274723_-	NAD-dependent malic enzyme	NA	NA	NA	NA	NA
WP_013160770.1|1274794_1276087_-	dihydroorotase	NA	NA	NA	NA	NA
WP_055343800.1|1276143_1278672_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	42.1	7.4e-183
WP_013160768.1|1278988_1279999_-	DUF4192 domain-containing protein	NA	NA	NA	NA	NA
WP_044636087.1|1280214_1280955_+	hypothetical protein	NA	NA	NA	NA	NA
WP_055343799.1|1281273_1282473_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_055343798.1|1282851_1283076_+	hypothetical protein	NA	NA	NA	NA	NA
WP_055343797.1|1283162_1283453_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157761843.1|1283536_1285021_+	DUF3631 domain-containing protein	NA	NA	NA	NA	NA
WP_155489098.1|1285041_1285266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_055343795.1|1285514_1286720_+|capsid	phage major capsid protein	capsid	A0A173G9U3	Propionibacterium_phage	37.5	1.2e-50
WP_097776266.1|1287751_1288354_+	Bro-N domain-containing protein	NA	A0A1D8EU39	Propionibacterium_phage	57.1	7.4e-17
WP_055343793.1|1289213_1289462_-	hypothetical protein	NA	NA	NA	NA	NA
WP_036939409.1|1289690_1290611_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
WP_013160765.1|1290725_1291163_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013160764.1|1291222_1291831_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_013160763.1|1291830_1292214_-	ribosome silencing factor	NA	NA	NA	NA	NA
WP_013160762.1|1292210_1292981_-	nicotinate-nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_055343819.1|1293054_1294296_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	50.6	1.3e-100
WP_055343792.1|1294305_1294974_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044658244.1|1295006_1296179_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	43.4	1.5e-66
WP_044658243.1|1296168_1297770_-	GTPase ObgE	NA	NA	NA	NA	NA
WP_013160755.1|1297918_1298182_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_013160754.1|1298195_1298504_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_097776184.1|1298739_1301070_-	Rne/Rng family ribonuclease	NA	NA	NA	NA	NA
WP_036939422.1|1301778_1302495_-	DUF2344 domain-containing protein	NA	NA	NA	NA	NA
WP_013160750.1|1302594_1303050_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_013160749.1|1303264_1304521_+	TerC family protein	NA	I7HPH5	Enterobacteria_phage	32.5	2.3e-36
WP_171035504.1|1304517_1305618_+	ionic transporter y4hA	NA	NA	NA	NA	NA
WP_048769609.1|1305681_1307625_-	TIGR03960 family B12-binding radical SAM protein	NA	NA	NA	NA	NA
WP_157764715.1|1307701_1309060_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_013160745.1|1309038_1309515_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	52.3	8.5e-32
WP_013160744.1|1309625_1311131_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_112317735.1|1311266_1311857_+	DoxX family protein	NA	NA	NA	NA	NA
WP_013160742.1|1311892_1312687_+	thioredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_097776185.1|1312950_1313745_+	thioredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_055343789.1|1313834_1316462_+|tRNA	valine--tRNA ligase	tRNA	A0A2K9KZB8	Tupanvirus	36.3	1.6e-159
WP_013160739.1|1316568_1317318_-	HAD family hydrolase	NA	NA	NA	NA	NA
WP_013160738.1|1317402_1318524_-	6-phosphofructokinase	NA	NA	NA	NA	NA
WP_044658236.1|1318602_1320045_-	threonine synthase	NA	NA	NA	NA	NA
WP_036939438.1|1320163_1320478_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013160735.1|1320589_1321867_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	59.2	4.4e-136
WP_162484287.1|1321988_1322624_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A248SJ97	Salicola_phage	38.7	1.2e-28
WP_162467436.1|1322701_1323313_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	45.6	9.8e-41
1330609:1330630	attR	CTGCAGCGCCTGGACGGCCTTG	NA	NA	NA	NA
>prophage 5
NZ_LT576033	Propionibacterium freudenreichii isolate PFRJS4 chromosome I	2654663	1805848	1889860	2654663	transposase	Mycobacterium_phage(28.57%)	59	NA	NA
WP_157761876.1|1805848_1806850_-|transposase	IS481-like element ISPfr17 family transposase	transposase	NA	NA	NA	NA
WP_097776207.1|1807131_1807431_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080774584.1|1807431_1810311_-	DUF3427 domain-containing protein	NA	A0A097BY72	Enterococcus_phage	27.0	1.2e-35
WP_013160285.1|1810831_1812148_-	anaerobic C4-dicarboxylate transporter	NA	NA	NA	NA	NA
WP_097850885.1|1812544_1812805_-	hypothetical protein	NA	NA	NA	NA	NA
WP_055343936.1|1813277_1814027_+	HNH endonuclease	NA	NA	NA	NA	NA
WP_129931507.1|1814119_1814359_+	hypothetical protein	NA	NA	NA	NA	NA
WP_055343935.1|1815542_1816769_+	ATP-grasp domain-containing protein	NA	NA	NA	NA	NA
WP_013160291.1|1816939_1817455_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013160292.1|1817489_1817996_-	hypothetical protein	NA	NA	NA	NA	NA
WP_097776208.1|1819338_1820646_+|transposase	ISL3 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	72.4	7.4e-187
WP_055343857.1|1823840_1825142_+|transposase	ISL3 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	72.4	7.9e-181
WP_013160296.1|1827924_1828227_-	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA	NA
WP_055343943.1|1828223_1829825_-	CRISPR-associated endonuclease Cas4/Cas1	NA	NA	NA	NA	NA
WP_055343942.1|1829814_1830813_-	hypothetical protein	NA	NA	NA	NA	NA
WP_055343941.1|1830809_1833422_-	type I-U CRISPR-associated helicase/endonuclease Cas3	NA	NA	NA	NA	NA
WP_055343940.1|1833418_1834960_-	type I-U CRISPR-associated protein Cas5/Cas6	NA	NA	NA	NA	NA
WP_055343938.1|1836692_1837967_+	threonine ammonia-lyase IlvA	NA	NA	NA	NA	NA
WP_157761877.1|1838064_1839066_+|transposase	IS481-like element ISPfr17 family transposase	transposase	NA	NA	NA	NA
WP_048735584.1|1839249_1839669_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155269317.1|1840094_1840238_+	hypothetical protein	NA	NA	NA	NA	NA
WP_044658118.1|1840470_1840785_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013160276.1|1841014_1841188_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013160275.1|1841228_1842161_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013160274.1|1842543_1843527_+	SPFH domain-containing protein	NA	NA	NA	NA	NA
WP_013160272.1|1843752_1844307_-	hypothetical protein	NA	NA	NA	NA	NA
WP_026138135.1|1844802_1846128_+|transposase	ISL3-like element ISPfr2 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	77.0	3.6e-197
WP_013160270.1|1846234_1847185_-	cation transporter	NA	A0A1V0SED0	Indivirus	32.2	2.2e-10
WP_013160269.1|1847301_1848696_-	amino acid permease	NA	NA	NA	NA	NA
WP_041704440.1|1849138_1849984_+	hydroxyethylthiazole kinase	NA	NA	NA	NA	NA
WP_080898979.1|1849980_1850832_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_055343702.1|1850903_1851695_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_055343701.1|1851773_1853090_+	cytosine permease	NA	NA	NA	NA	NA
WP_048735593.1|1853177_1854875_-	AarF/ABC1/UbiB kinase family protein	NA	A0A2N9QVT9	Dishui_lake_phycodnavirus	30.2	5.0e-42
WP_055343700.1|1854917_1855490_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_048735596.1|1855904_1856447_+	hypothetical protein	NA	NA	NA	NA	NA
WP_055343699.1|1856567_1858136_+	S-layer homology domain-containing protein	NA	NA	NA	NA	NA
WP_013160259.1|1858259_1858916_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_013160258.1|1858912_1860178_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	39.8	9.2e-33
WP_036943101.1|1860174_1861140_-	methionine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_013160256.1|1861690_1862419_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.3	9.6e-35
WP_055343698.1|1862399_1864265_+	HAMP domain-containing histidine kinase	NA	Q8QNA2	Ectocarpus_siliculosus_virus	35.2	1.8e-05
WP_055343697.1|1864529_1865522_-	ribokinase	NA	NA	NA	NA	NA
WP_055343696.1|1865774_1868546_-	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_013160252.1|1869046_1871704_-	pyruvate, phosphate dikinase	NA	H8YJB7	Vibrio_phage	37.2	4.2e-80
WP_036943092.1|1871912_1872806_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_036943148.1|1873317_1874259_+	restriction endonuclease	NA	NA	NA	NA	NA
WP_048735606.1|1874485_1875808_-	MATE family efflux transporter	NA	NA	NA	NA	NA
WP_013160247.1|1875916_1876906_+	methyltransferase	NA	NA	NA	NA	NA
WP_013160246.1|1877112_1877886_+	YwiC-like family protein	NA	NA	NA	NA	NA
WP_013160245.1|1878014_1878869_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	42.5	8.0e-57
WP_081014657.1|1879134_1879605_+	DUF1648 domain-containing protein	NA	NA	NA	NA	NA
WP_112317811.1|1880485_1881709_-	LssY C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_036943086.1|1882138_1883329_+	DUF1015 domain-containing protein	NA	NA	NA	NA	NA
WP_013160240.1|1883452_1884976_+	acetyl-CoA hydrolase/transferase family protein	NA	NA	NA	NA	NA
WP_013160239.1|1885203_1886016_-	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	29.7	2.3e-13
WP_044635925.1|1886055_1887105_-	D-2-hydroxyacid dehydrogenase	NA	M1HTA3	Paramecium_bursaria_Chlorella_virus	24.7	1.8e-05
WP_036943078.1|1887183_1887837_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_055346098.1|1888552_1889860_+|transposase	ISL3 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	71.0	5.5e-182
>prophage 6
NZ_LT576033	Propionibacterium freudenreichii isolate PFRJS4 chromosome I	2654663	1935232	2000507	2654663	transposase,tRNA	Tupanvirus(25.0%)	51	NA	NA
WP_013160182.1|1935232_1936867_-|tRNA	arginine--tRNA ligase	tRNA	A0A2K9L2F0	Tupanvirus	35.1	1.4e-81
WP_055343763.1|1936958_1938392_+	UDP-glucose/GDP-mannose dehydrogenase family protein	NA	A0A127AXI2	Bacillus_phage	32.2	6.1e-49
WP_055343595.1|1938582_1939956_-|transposase	IS1380 family transposase	transposase	NA	NA	NA	NA
WP_055343453.1|1940173_1942024_+	hypothetical protein	NA	NA	NA	NA	NA
WP_097838469.1|1944497_1945970_-	amidase	NA	NA	NA	NA	NA
WP_055343452.1|1946110_1946947_-	mycofactocin-coupled SDR family oxidoreductase	NA	W8CYX9	Bacillus_phage	33.0	1.8e-08
WP_155488384.1|1947189_1947993_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_055343451.1|1948050_1948968_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	39.4	8.7e-33
WP_157761853.1|1949427_1950117_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_097776216.1|1950330_1951197_+	ABC transporter	NA	NA	NA	NA	NA
WP_055343595.1|1951109_1952483_+|transposase	IS1380 family transposase	transposase	NA	NA	NA	NA
WP_048769340.1|1952695_1953322_-	YdcF family protein	NA	NA	NA	NA	NA
WP_013160179.1|1953617_1955390_-	DEAD/DEAH box helicase	NA	I4AZM6	Saccharomonospora_phage	35.3	8.2e-80
WP_157761873.1|1955802_1956804_+|transposase	IS481-like element ISPfr17 family transposase	transposase	NA	NA	NA	NA
WP_013160178.1|1958518_1958812_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
WP_055343524.1|1958825_1960130_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_036942895.1|1960132_1961005_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA	NA
WP_013160175.1|1961041_1961797_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_055343525.1|1961980_1962625_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_013160173.1|1962629_1963988_-	MFS transporter	NA	NA	NA	NA	NA
WP_013160172.1|1964198_1965077_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_063493888.1|1965073_1966669_-	AMP-binding protein	NA	A0A2K9KZV5	Tupanvirus	21.2	2.5e-11
WP_055343527.1|1966699_1967926_-	L-carnitine CoA-transferase	NA	NA	NA	NA	NA
WP_055343526.1|1967995_1969132_-	crotonobetainyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_048769299.1|1969261_1970269_-	alpha/beta hydrolase fold domain-containing protein	NA	M1PGN2	Moumouvirus	29.0	4.4e-22
WP_080970570.1|1970276_1971677_-	MFS transporter	NA	NA	NA	NA	NA
WP_157761854.1|1972373_1973438_+	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA	NA
WP_048733818.1|1973990_1975433_+	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA	NA
WP_055345855.1|1975436_1976177_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044657964.1|1976333_1979729_+	PPi-type phosphoenolpyruvate carboxykinase	NA	NA	NA	NA	NA
WP_055343528.1|1979857_1980712_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_013160148.1|1980753_1981398_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	41.9	5.1e-40
WP_157761872.1|1981611_1982613_+|transposase	IS481-like element ISPfr17 family transposase	transposase	NA	NA	NA	NA
WP_013161672.1|1983174_1983507_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013161673.1|1983651_1984272_-	hydrolase	NA	NA	NA	NA	NA
WP_112317773.1|1984268_1985072_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_013161675.1|1985229_1985589_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013161677.1|1985779_1986115_-	thioredoxin	NA	A0A2K9L3H4	Tupanvirus	30.9	7.1e-09
WP_097776217.1|1986230_1986908_-	metal-dependent transcriptional regulator	NA	NA	NA	NA	NA
WP_013161679.1|1987084_1988206_+	phosphoserine transaminase	NA	NA	NA	NA	NA
WP_097776218.1|1988248_1988635_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013161681.1|1988796_1990359_-	NCS2 family permease	NA	NA	NA	NA	NA
WP_013161682.1|1990404_1990746_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013161683.1|1990823_1991603_-	DUF3027 domain-containing protein	NA	NA	NA	NA	NA
WP_013161684.1|1991606_1991993_-	cold shock domain-containing protein	NA	Q9AZD3	Lactococcus_phage	42.9	9.0e-08
WP_013161685.1|1992246_1993248_+	hypothetical protein	NA	NA	NA	NA	NA
WP_044636319.1|1993244_1995566_+	helicase-associated domain-containing protein	NA	NA	NA	NA	NA
WP_097776220.1|1995638_1997249_+	DEAD/DEAH box helicase	NA	G8DGC8	Emiliania_huxleyi_virus	25.4	1.3e-12
WP_155489102.1|1997182_1998493_-|transposase	ISL3 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	77.0	3.9e-196
WP_097776271.1|1998937_1999381_-	S-layer homology domain-containing protein	NA	NA	NA	NA	NA
WP_044635816.1|1999472_2000507_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_LT576033	Propionibacterium freudenreichii isolate PFRJS4 chromosome I	2654663	2444998	2491870	2654663	holin,integrase,transposase	Mycobacterium_phage(38.46%)	41	2447834:2447893	2465711:2466952
WP_055346098.1|2444998_2446306_-|transposase	ISL3 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	71.0	5.5e-182
WP_172952506.1|2447183_2447744_-	amidohydrolase family protein	NA	NA	NA	NA	NA
2447834:2447893	attL	GGCTCATCATAATCCACGGTGTAGCTGAGGTCTGAACCCGCCGGTTTCGAGGAGGGATCT	NA	NA	NA	NA
WP_097776241.1|2447839_2449132_-|transposase	ISL3 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	73.3	3.6e-178
WP_097776160.1|2449088_2450239_-|transposase	IS3-like element ISPfr10 family transposase	transposase	S5WIU1	Leptospira_phage	37.5	8.6e-38
WP_129931495.1|2450600_2451059_-	hypothetical protein	NA	NA	NA	NA	NA
WP_097776242.1|2451083_2451359_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157761795.1|2451387_2452389_+|transposase	IS481-like element ISPfr17 family transposase	transposase	NA	NA	NA	NA
WP_097776244.1|2452680_2454819_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_027587604.1|2455290_2455554_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013162095.1|2455557_2455860_-	DUF4193 domain-containing protein	NA	NA	NA	NA	NA
WP_052809198.1|2456443_2457385_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A0K2CP59	Brevibacillus_phage	24.2	1.8e-17
WP_129931493.1|2457381_2457729_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013162093.1|2457788_2458313_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_172664066.1|2459664_2459949_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013162090.1|2460237_2460414_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_027587608.1|2460419_2460728_+|transposase	transposase	transposase	A0A1B3AZF8	Gordonia_phage	59.1	3.5e-23
WP_027587609.1|2460689_2461847_-|transposase	IS30-like element ISPfr16 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.9	1.5e-42
WP_027587610.1|2462242_2462791_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013162114.1|2464456_2465764_+|transposase	ISL3-like element ISPfr6 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	73.0	1.8e-188
WP_080516165.1|2465996_2467964_+	KUP/HAK/KT family potassium transporter	NA	A7K9V6	Acanthocystis_turfacea_chlorella_virus	31.2	6.3e-73
2465711:2466952	attR	AGATCCCTCCTCGAAACCGGCGGGTTCAGACCTCAGCTACACCGTGGATTATGATGAGCCCAGCTCGGCGATCATTCCTGGAAGCGCGGAGGGGACCCTTGCGGCCGTGAGGATTCTGCAAGCATTGCCCCTTCCACCGTATGGATTTCGTGAGGATCGCGCCACTCCTGCGCGTGCCGCGATTTGATCGATGATTGCGCCTGCCCAGAGTGCAGTGCGCCATCAGGTCGGTCGGGCGGAGCGCATCCAGGGTGAGTGGCGCTGCCGCTGTCAACAAGGGAGTCAGATGCTCGTGTCCACACACAGCGATCACCGGAGTCTGCCTTTATGGCGACAGAGACCATCCAAGGCACCGTATTCCCCCGCTCGAGGGCTCGTGCTCGCTGCGCTGGGTGTCGTGTTCGGCGACATCGGCACCTCACCCCTCTACTCCATGCAGACCGTCTTCGCGATCGATCACCACACCGCCGTACCCAGCCGCGACAACGTCATCGGCATCATCTCGCTGGTCATCTGGTCCATCCTGCTCATCGTCTGCATCAAGTACGTCACCCTCGTGATGCGTGCCGACAACGGGGGCGAGGGCGGCATCCTGGCCCTCATGGCTCTGCTGCAACGCCACATCCCCTCACGCTGCCGACTCGCCGCTGTGACGATGGGAATCGGAATGGTGGGGGCGGCGCTGTTCTACGGGGACTCAATGATCACGCCCGCGATTTCGGTGATGAGCGCCCTCGAGGGTGCCGCCGTCATCGATCCCGGTCTGACTCGGATGGTGCTGCCCGCCGCGGTGGTTATCCTCACCGCCCTGTTCGTCATCCAGCAGAGGGGTACCGCGGTGATTGGACGGGCGTTCGGACCCATCATGCTGGTCTGGTTCATCAGCATCGCCGCGCTGGGGGCACCGTGGATTCTTCGCTGTCCTCAGATCCTGATGGCGCTGTCACCCCAGTGGGCCCTGCTGTTCGTCCTTGAGCGCCCGTGGACGGCTTTCGTCGCCATGGGGGCGGTCGTGCTGACCGTCACGGGAGCGGAGGCGCTCTACGCCGACATGGGCCACTTCGGCAGCCGCCGGGTCCGCATCGCCTGGTTCTCGGTGGTGCTGCCTGCTCTCATGCTGAACTACCTCGGGCAGGGCGCCATGATCATTCTTCATCCCGCCTGGATCGACAACCCCTTCTTCCGAACTGCGCCGCAGTGGGCACAGGTCCCGCTGGTGGTGATCGCCACTCTGGCCACCAT	NA	NA	NA	NA
WP_051232795.1|2468120_2468585_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA	NA
WP_157761878.1|2468694_2469696_-|transposase	IS481-like element ISPfr17 family transposase	transposase	NA	NA	NA	NA
WP_041704881.1|2469916_2470390_-	Hsp20 family protein	NA	NA	NA	NA	NA
WP_013162109.1|2470758_2471091_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013162108.1|2471087_2471867_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA	NA
WP_027587600.1|2471863_2472445_+	recombinase family protein	NA	A0A219YA40	Aeromonas_phage	36.8	4.2e-17
WP_013162114.1|2473486_2474794_-|transposase	ISL3-like element ISPfr6 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	73.0	1.8e-188
WP_097776275.1|2476895_2478106_-|transposase	IS3-like element ISPfr11 family transposase	transposase	U5P429	Shigella_phage	34.1	2.1e-34
WP_013160028.1|2478193_2478391_+	hypothetical protein	NA	NA	NA	NA	NA
WP_036940431.1|2479120_2481535_+	cbb3-type cytochrome c oxidase subunit I	NA	NA	NA	NA	NA
WP_036940428.1|2482543_2483308_+	slipin family protein	NA	A0A2K9L035	Tupanvirus	32.6	5.0e-26
WP_044636453.1|2483421_2483844_+	hypothetical protein	NA	NA	NA	NA	NA
WP_081014630.1|2484117_2485221_-	hypothetical protein	NA	NA	NA	NA	NA
WP_055343568.1|2485404_2485968_+	DUF3618 domain-containing protein	NA	NA	NA	NA	NA
WP_044657636.1|2486030_2487125_+	YihY/virulence factor BrkB family protein	NA	NA	NA	NA	NA
WP_060761131.1|2487171_2487426_+	hypothetical protein	NA	NA	NA	NA	NA
WP_097776247.1|2487349_2488705_-|transposase	ISL3 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	72.4	7.7e-187
WP_013160015.1|2488671_2489460_-	oxidoreductase	NA	NA	NA	NA	NA
WP_013160014.1|2489743_2490343_-	mismatch-specific DNA-glycosylase	NA	NA	NA	NA	NA
WP_013160013.1|2490346_2491351_-	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
WP_036940614.1|2491489_2491870_+|holin	phage holin family protein	holin	NA	NA	NA	NA
