assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900078775.1_ASM90007877v1	NZ_LT549889	Mycolicibacterium aurum isolate liquid chromosome I	1	90668-90742	1	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,DinG	Orphan	GCACCACCACGACTAGGCACCCACCA	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,DinG	NA|230aa|up_9|NZ_LT549889.1_78002_78692_-,NA|196aa|up_4|NZ_LT549889.1_83762_84350_+,NA|65aa|down_0|NZ_LT549889.1_91765_91960_-	NA|230aa|up_9|NZ_LT549889.1_78002_78692_-	NA	NA|144aa|up_8|NZ_LT549889.1_78698_79130_-	cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps)	NA|858aa|up_7|NZ_LT549889.1_79272_81846_+	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|261aa|up_6|NZ_LT549889.1_81880_82663_+	pfam16321, Ribosom_S30AE_C, Sigma 54 modulation/S30EA ribosomal protein C-terminus	NA|298aa|up_5|NZ_LT549889.1_82796_83690_+	pfam00582, Usp, Universal stress protein family	NA|196aa|up_4|NZ_LT549889.1_83762_84350_+	NA	NA|292aa|up_3|NZ_LT549889.1_84364_85240_-	pfam00582, Usp, Universal stress protein family	NA|149aa|up_2|NZ_LT549889.1_85409_85856_+	pfam12900, Pyridox_ox_2, Pyridoxamine 5'-phosphate oxidase	NA|335aa|up_1|NZ_LT549889.1_87873_88878_+	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases	NA|560aa|up_0|NZ_LT549889.1_88947_90627_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|65aa|down_0|NZ_LT549889.1_91765_91960_-	NA	NA|94aa|down_1|NZ_LT549889.1_92567_92849_+	pfam08962, DUF1876, Domain of unknown function (DUF1876)	NA|316aa|down_2|NZ_LT549889.1_92910_93858_+	pfam00582, Usp, Universal stress protein family	NA|93aa|down_3|NZ_LT549889.1_93873_94152_+	pfam08940, DUF1918, Domain of unknown function (DUF1918)	NA|95aa|down_4|NZ_LT549889.1_94338_94623_+	COG3462, COG3462, Predicted membrane protein [Function unknown]	NA|366aa|down_5|NZ_LT549889.1_95104_96202_+	pfam17179, Fer4_22, 4Fe-4S dicluster domain	NA|283aa|down_6|NZ_LT549889.1_96194_97043_+	cd06221, sulfite_reductase_like, Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases	NA|253aa|down_7|NZ_LT549889.1_97043_97802_+	COG1941, FrhG, Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]	NA|431aa|down_8|NZ_LT549889.1_97798_99091_+	COG3259, FrhA, Coenzyme F420-reducing hydrogenase, alpha subunit [Energy production and conversion]	NA|162aa|down_9|NZ_LT549889.1_99087_99573_+	cd00518, H2MP, Hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP)
GCF_900078775.1_ASM90007877v1	NZ_LT549889	Mycolicibacterium aurum isolate liquid chromosome I	2	4538555-4538651	2	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,DinG	Orphan	TGCGGGTGACGGTGGCCGCCCCG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,DinG	NA|51aa|up_0|NZ_LT549889.1_4536619_4536772_-,NA	NA|380aa|up_9|NZ_LT549889.1_4525853_4526993_-	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|433aa|up_8|NZ_LT549889.1_4526989_4528288_-	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|420aa|up_7|NZ_LT549889.1_4528299_4529559_-	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|343aa|up_6|NZ_LT549889.1_4529555_4530584_-	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|478aa|up_5|NZ_LT549889.1_4530603_4532037_-	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|277aa|up_4|NZ_LT549889.1_4532042_4532873_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|256aa|up_3|NZ_LT549889.1_4532893_4533661_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|352aa|up_2|NZ_LT549889.1_4534102_4535158_-	cd05288, PGDH, Prostaglandin dehydrogenases	NA|411aa|up_1|NZ_LT549889.1_4535225_4536458_-	cd03469, Rieske_RO_Alpha_N, Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms	NA|51aa|up_0|NZ_LT549889.1_4536619_4536772_-	NA	NA|270aa|down_0|NZ_LT549889.1_4539099_4539909_+	PRK06142, PRK06142, crotonase/enoyl-CoA hydratase family protein	NA|339aa|down_1|NZ_LT549889.1_4539932_4540949_-	cd01902, Ntn_CGH, Choloylglycine hydrolase (CGH) is a bile salt-modifying enzyme that hydrolyzes non-peptide carbon-nitrogen bonds in choloylglycine and choloyltaurine, both of which are present in bile	NA|171aa|down_2|NZ_LT549889.1_4541094_4541607_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|324aa|down_3|NZ_LT549889.1_4541648_4542620_+	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase	NA|399aa|down_4|NZ_LT549889.1_4542638_4543835_-	TIGR01976, am_tr_V_VC1184, cysteine desulfurase family protein, VC1184 subfamily	NA|168aa|down_5|NZ_LT549889.1_4544113_4544617_+	pfam10759, DUF2587, Protein of unknown function (DUF2587)	NA|279aa|down_6|NZ_LT549889.1_4544623_4545460_+	COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|305aa|down_7|NZ_LT549889.1_4545452_4546367_+	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]	NA|277aa|down_8|NZ_LT549889.1_4546353_4547184_+	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|267aa|down_9|NZ_LT549889.1_4547203_4548004_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
GCF_900078775.1_ASM90007877v1	NZ_LT549889	Mycolicibacterium aurum isolate liquid chromosome I	3	5740684-5740771	3	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,DinG	Orphan	CGGCACTCTGATGACCAATGTCT	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,DinG	NA|272aa|up_9|NZ_LT549889.1_5730714_5731530_-,NA|273aa|down_3|NZ_LT549889.1_5745414_5746233_-	NA|272aa|up_9|NZ_LT549889.1_5730714_5731530_-	NA	NA|169aa|up_8|NZ_LT549889.1_5731508_5732015_-	pfam10698, DUF2505, Protein of unknown function (DUF2505)	NA|361aa|up_7|NZ_LT549889.1_5732013_5733096_+	PRK13903, murB, UDP-N-acetylmuramate dehydrogenase	NA|421aa|up_6|NZ_LT549889.1_5733162_5734425_+	pfam17964, Big_10, Bacterial Ig domain	NA|253aa|up_5|NZ_LT549889.1_5734421_5735180_-	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]	NA|436aa|up_4|NZ_LT549889.1_5735410_5736718_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|441aa|up_3|NZ_LT549889.1_5736742_5738065_+	TIGR03449, mycothiol_MshA, D-inositol-3-phosphate glycosyltransferase	NA|176aa|up_2|NZ_LT549889.1_5738061_5738589_+	pfam10722, YbjN, Putative bacterial sensory transduction regulator	NA|247aa|up_1|NZ_LT549889.1_5738602_5739343_+	PRK14120, gpmA, phosphoglyceromutase; Provisional	NA|389aa|up_0|NZ_LT549889.1_5739462_5740629_+	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|303aa|down_0|NZ_LT549889.1_5742343_5743252_+	pfam02517, Abi, CAAX protease self-immunity	NA|408aa|down_1|NZ_LT549889.1_5743261_5744485_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|229aa|down_2|NZ_LT549889.1_5744472_5745159_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|273aa|down_3|NZ_LT549889.1_5745414_5746233_-	NA	NA|327aa|down_4|NZ_LT549889.1_5746246_5747227_+	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]	NA|329aa|down_5|NZ_LT549889.1_5747223_5748210_+	PRK10811, rne, ribonuclease E; Reviewed	NA|282aa|down_6|NZ_LT549889.1_5748209_5749055_+	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|269aa|down_7|NZ_LT549889.1_5749051_5749858_+	pfam13622, 4HBT_3, Thioesterase-like superfamily	NA|284aa|down_8|NZ_LT549889.1_5749886_5750738_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|77aa|down_9|NZ_LT549889.1_5750876_5751107_+	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family
