assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900016155.1_PFREUDJS1	NZ_LN997841	Propionibacterium freudenreichii subsp. shermanii isolate PFREUDJS1 chromosome I	1	2098890-2098988	1	CRISPRCasFinder	no		csa3,DEDDh,DinG,WYL,cas3,csb1gr7,csb2gr5,csb3,cas1,cas2	Orphan	GGTCAGCCCAACAAGCTGACCCAC	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,WYL,cas3,csb1gr7,csb2gr5,csb3,cas1,cas2	NA,NA	NA|108aa|up_9|NZ_LN997841.1_2085375_2085699_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|287aa|up_8|NZ_LN997841.1_2085704_2086565_-	PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	NA|518aa|up_7|NZ_LN997841.1_2086638_2088192_-	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|283aa|up_6|NZ_LN997841.1_2088313_2089162_-	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed	NA|830aa|up_5|NZ_LN997841.1_2090507_2092997_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|418aa|up_4|NZ_LN997841.1_2093133_2094387_+	COG1502, Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]	NA|252aa|up_3|NZ_LN997841.1_2094459_2095215_-	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]	NA|347aa|up_2|NZ_LN997841.1_2095211_2096252_-	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|319aa|up_1|NZ_LN997841.1_2096322_2097279_-	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|339aa|up_0|NZ_LN997841.1_2097350_2098367_-	COG4607, CeuA, ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|233aa|down_0|NZ_LN997841.1_2099144_2099843_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|398aa|down_1|NZ_LN997841.1_2099839_2101033_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|112aa|down_2|NZ_LN997841.1_2101378_2101714_+	pfam04024, PspC, PspC domain	NA|314aa|down_3|NZ_LN997841.1_2102013_2102955_+	cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR)	NA|296aa|down_4|NZ_LN997841.1_2103005_2103893_-	pfam09234, DUF1963, Domain of unknown function (DUF1963)	NA|518aa|down_5|NZ_LN997841.1_2104097_2105651_-	PRK00074, guaA, GMP synthase; Reviewed	NA|343aa|down_6|NZ_LN997841.1_2105959_2106988_-	PRK11618, PRK11618, inner membrane ABC transporter permease protein YjfF; Provisional	NA|353aa|down_7|NZ_LN997841.1_2106984_2108043_-	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|327aa|down_8|NZ_LN997841.1_2109710_2110691_-	cd06309, PBP1_galactofuranose_YtfQ-like, periplasmic binding domain of ABC-type galactofuranose YtfQ-like transport systems	NA|346aa|down_9|NZ_LN997841.1_2110934_2111972_-	cd01574, PBP1_LacI, ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators
GCF_900016155.1_PFREUDJS1	NZ_LN997841	Propionibacterium freudenreichii subsp. shermanii isolate PFREUDJS1 chromosome I	2	2424099-2427021	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	csb1gr7,csb2gr5,cas3,csb3,cas1,cas2	csa3,DEDDh,DinG,WYL,cas3,csb1gr7,csb2gr5,csb3,cas1,cas2	Unclear	ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC,ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC,ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC	36,36,36	0	0	NA	NA	NA:NA:NA	40,40,40	40	Unclear	csa3,DEDDh,DinG,WYL,cas3,csb1gr7,csb2gr5,csb3,cas1,cas2	NA,NA|169aa|down_0|NZ_LN997841.1_2427622_2428129_+,NA|172aa|down_1|NZ_LN997841.1_2428163_2428679_-,NA|80aa|down_3|NZ_LN997841.1_2431249_2431489_-,NA|92aa|down_5|NZ_LN997841.1_2432788_2433064_+,NA|98aa|down_8|NZ_LN997841.1_2438177_2438471_-,NA|141aa|down_9|NZ_LN997841.1_2438844_2439267_-	NA|337aa|up_9|NZ_LN997841.1_2410986_2411997_-	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|96aa|up_8|NZ_LN997841.1_2412002_2412290_-	pfam10006, DUF2249, Uncharacterized conserved protein (DUF2249)	NA|425aa|up_7|NZ_LN997841.1_2412764_2414039_-	PRK08639, PRK08639, threonine dehydratase; Validated	csb1gr7|400aa|up_6|NZ_LN997841.1_2414568_2415768_+	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053)	csb2gr5|514aa|up_5|NZ_LN997841.1_2415769_2417311_+	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system	cas3|872aa|up_4|NZ_LN997841.1_2417307_2419923_+	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc	csb3|334aa|up_3|NZ_LN997841.1_2419919_2420921_+	cd09764, Csb3_I-U, CRISPR/Cas system-associated RAMP superfamily protein Csb3	cas1|534aa|up_2|NZ_LN997841.1_2420910_2422512_+	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	NA|345aa|up_1|NZ_LN997841.1_2422599_2423634_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	cas2|96aa|up_0|NZ_LN997841.1_2423632_2423920_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|169aa|down_0|NZ_LN997841.1_2427622_2428129_+	NA	NA|172aa|down_1|NZ_LN997841.1_2428163_2428679_-	NA	NA|334aa|down_2|NZ_LN997841.1_2430121_2431123_-	cd08252, AL_MDR, Arginate lyase and other MDR family members	NA|80aa|down_3|NZ_LN997841.1_2431249_2431489_-	NA	NA|250aa|down_4|NZ_LN997841.1_2431581_2432331_-	pfam07510, DUF1524, Protein of unknown function (DUF1524)	NA|92aa|down_5|NZ_LN997841.1_2432788_2433064_+	NA	NA|439aa|down_6|NZ_LN997841.1_2433460_2434777_+	PRK12489, PRK12489, anaerobic C4-dicarboxylate transporter; Reviewed	NA|1047aa|down_7|NZ_LN997841.1_2435036_2438177_+	cd09203, PLDc_N_DEXD_b1, N-terminal putative catalytic domain of uncharacterized prokaryotic and archeal HKD family nucleases fused to a DEAD/DEAH box helicase domain	NA|98aa|down_8|NZ_LN997841.1_2438177_2438471_-	NA	NA|141aa|down_9|NZ_LN997841.1_2438844_2439267_-	NA
GCF_900016155.1_PFREUDJS1	NZ_LN997841	Propionibacterium freudenreichii subsp. shermanii isolate PFREUDJS1 chromosome I	3	2476270-2476376	3	CRISPRCasFinder	no	csa3	csa3,DEDDh,DinG,WYL,cas3,csb1gr7,csb2gr5,csb3,cas1,cas2	Type I-A	GGCGCGGTCGATTTTCTGCCGGGTGATCTGCGGCGG	36	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,WYL,cas3,csb1gr7,csb2gr5,csb3,cas1,cas2	NA|108aa|up_7|NZ_LN997841.1_2464979_2465303_+,NA|395aa|up_0|NZ_LN997841.1_2474973_2476158_-,NA|130aa|down_4|NZ_LN997841.1_2483141_2483531_-	NA|270aa|up_9|NZ_LN997841.1_2460170_2460980_-	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|556aa|up_8|NZ_LN997841.1_2460976_2462644_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|108aa|up_7|NZ_LN997841.1_2464979_2465303_+	NA	NA|264aa|up_6|NZ_LN997841.1_2465368_2466160_+	pfam13683, rve_3, Integrase core domain	NA|318aa|up_5|NZ_LN997841.1_2466121_2467075_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|1023aa|up_4|NZ_LN997841.1_2467423_2470492_+	PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha; Reviewed	NA|463aa|up_3|NZ_LN997841.1_2470514_2471903_+	COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]	NA|332aa|up_2|NZ_LN997841.1_2471948_2472944_+	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs	NA|436aa|up_1|NZ_LN997841.1_2473186_2474494_+	pfam01610, DDE_Tnp_ISL3, Transposase	NA|395aa|up_0|NZ_LN997841.1_2474973_2476158_-	NA	NA|674aa|down_0|NZ_LN997841.1_2477586_2479608_+	pfam13175, AAA_15, AAA ATPase domain	NA|186aa|down_1|NZ_LN997841.1_2481609_2482167_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|82aa|down_2|NZ_LN997841.1_2482170_2482416_+	pfam00892, EamA, EamA-like transporter family	NA|215aa|down_3|NZ_LN997841.1_2482500_2483145_-	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|130aa|down_4|NZ_LN997841.1_2483141_2483531_-	NA	NA|176aa|down_5|NZ_LN997841.1_2483674_2484202_+	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism]	NA|169aa|down_6|NZ_LN997841.1_2484316_2484823_-	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|466aa|down_7|NZ_LN997841.1_2484812_2486210_-	pfam13166, AAA_13, AAA domain	NA|145aa|down_8|NZ_LN997841.1_2486301_2486736_+	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit	NA|440aa|down_9|NZ_LN997841.1_2486711_2488031_+	cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Polymerase V
