assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900004855.1_BB155	NZ_LN854556	Staphylococcus aureus strain B155 chromosome 1	1	748671-748752	1	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	TGAAATTCTACAGACAATGCAAGTTGG	27	1	12	748698-748725|748698-748725|748698-748725|748698-748725|748698-748725|748698-748725|748698-748725|748698-748725|748698-748725|748698-748725|748698-748725|748698-748725	NZ_LN854556.1_283364-283337|NZ_LN854556.1_739208-739235|NZ_LN854556.1_780162-780135|NZ_LN854556.1_902405-902378|NZ_LN854556.1_831383-831356|NZ_LN854556.1_831438-831411|NZ_LN854556.1_1618727-1618700|NZ_LN854556.1_1618782-1618755|NZ_LN854556.1_2689504-2689477|NZ_LN854556.1_240941-240968|NZ_LN854556.1_1989522-1989495|NZ_LN854556.1_1989693-1989666	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|505aa|up_9|NZ_LN854556.1_735580_737095_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_8|NZ_LN854556.1_737334_738393_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_7|NZ_LN854556.1_738550_739093_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|up_6|NZ_LN854556.1_739643_740561_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|502aa|up_5|NZ_LN854556.1_740842_742348_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|up_4|NZ_LN854556.1_742688_743189_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|up_3|NZ_LN854556.1_743208_744075_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|up_2|NZ_LN854556.1_744875_745274_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|up_1|NZ_LN854556.1_745236_747342_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|up_0|NZ_LN854556.1_747459_748431_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|324aa|down_0|NZ_LN854556.1_749104_750076_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|319aa|down_1|NZ_LN854556.1_750062_751019_+	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|254aa|down_2|NZ_LN854556.1_751015_751777_+	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]	NA|343aa|down_3|NZ_LN854556.1_751895_752924_+	COG4607, CeuA, ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|105aa|down_4|NZ_LN854556.1_753184_753499_-	COG4357, COG4357, Zinc finger domain containing protein (CHY type) [Function unknown]	NA|308aa|down_5|NZ_LN854556.1_753516_754440_-	PRK13906, murB, UDP-N-acetylmuramate dehydrogenase	NA|173aa|down_6|NZ_LN854556.1_754566_755085_-	pfam04229, GrpB, GrpB protein	NA|293aa|down_7|NZ_LN854556.1_755204_756083_+	NF033194, lipo_EMYY, EMYY motif lipoprotein	NA|107aa|down_8|NZ_LN854556.1_756236_756557_+	pfam11009, DUF2847, Protein of unknown function (DUF2847)	NA|375aa|down_9|NZ_LN854556.1_756981_758106_+	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]
GCF_900004855.1_BB155	NZ_LN854556	Staphylococcus aureus strain B155 chromosome 1	2	968034-968124	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	ATAATGTGCAAGTTGGGGTGTGGGCCCCAACA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|201aa|up_7|NZ_LN854556.1_962357_962960_+,NA|26aa|up_6|NZ_LN854556.1_963259_963337_+,NA|97aa|up_1|NZ_LN854556.1_967315_967606_-,NA|44aa|down_2|NZ_LN854556.1_970232_970364_-	NA|329aa|up_9|NZ_LN854556.1_960981_961968_-	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase	NA|59aa|up_8|NZ_LN854556.1_962166_962343_+	COG4873, COG4873, Uncharacterized protein conserved in bacteria [Function unknown]	NA|201aa|up_7|NZ_LN854556.1_962357_962960_+	NA	NA|26aa|up_6|NZ_LN854556.1_963259_963337_+	NA	NA|95aa|up_5|NZ_LN854556.1_963974_964259_+	pfam09683, Lactococcin_972, Bacteriocin (Lactococcin_972)	NA|655aa|up_4|NZ_LN854556.1_964302_966267_+	COG4652, COG4652, Uncharacterized protein conserved in bacteria [Function unknown]	NA|107aa|up_3|NZ_LN854556.1_966269_966590_+	COG5294, COG5294, Uncharacterized protein conserved in bacteria [Function unknown]	NA|214aa|up_2|NZ_LN854556.1_966586_967228_+	TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group	NA|97aa|up_1|NZ_LN854556.1_967315_967606_-	NA	NA|46aa|up_0|NZ_LN854556.1_967746_967884_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|119aa|down_0|NZ_LN854556.1_968383_968740_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|320aa|down_1|NZ_LN854556.1_969227_970187_+	COG4594, FecB, ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|44aa|down_2|NZ_LN854556.1_970232_970364_-	NA	NA|72aa|down_3|NZ_LN854556.1_970427_970643_-	COG2314, XynA, Predicted membrane protein [Function unknown]	NA|184aa|down_4|NZ_LN854556.1_970807_971359_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|313aa|down_5|NZ_LN854556.1_971409_972348_-	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated	NA|454aa|down_6|NZ_LN854556.1_972529_973891_+	COG1169, MenF, Isochorismate synthase [Coenzyme metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|558aa|down_7|NZ_LN854556.1_973877_975551_+	COG1165, MenD, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]	NA|268aa|down_8|NZ_LN854556.1_975537_976341_+	TIGR03695, menH_SHCHC, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase	NA|274aa|down_9|NZ_LN854556.1_976333_977155_+	PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated
GCF_900004855.1_BB155	NZ_LN854556	Staphylococcus aureus strain B155 chromosome 1	3	2000611-2000699	3	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,csa3,WYL	Unclear	CAATCCAATTTCTCTATGTTGGGGCCCCACC	31	1	6	2000642-2000668|2000642-2000668|2000642-2000668|2000642-2000668|2000642-2000668|2000642-2000668	NZ_LN854556.1_1906926-1906900|NZ_LN854556.1_138482-138508|NZ_LN854556.1_319986-319960|NZ_LN854556.1_320042-320016|NZ_LN854556.1_1618783-1618809|NZ_LN854556.1_1989752-1989778	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|37aa|up_9|NZ_LN854556.1_1992023_1992134_-,NA|31aa|up_5|NZ_LN854556.1_1995141_1995234_-,NA	NA|37aa|up_9|NZ_LN854556.1_1992023_1992134_-	NA	NA|244aa|up_8|NZ_LN854556.1_1992221_1992953_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|up_7|NZ_LN854556.1_1992954_1994268_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|up_6|NZ_LN854556.1_1994559_1995060_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|up_5|NZ_LN854556.1_1995141_1995234_-	NA	DEDDh|185aa|up_4|NZ_LN854556.1_1995450_1996005_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|up_3|NZ_LN854556.1_1996071_1997142_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|up_2|NZ_LN854556.1_1997388_1997919_-	pfam11667, DUF3267, Putative zincin peptidase	NA|454aa|up_1|NZ_LN854556.1_1998088_1999450_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|316aa|up_0|NZ_LN854556.1_1999530_2000478_-	PRK13337, PRK13337, putative lipid kinase; Reviewed	NA|476aa|down_0|NZ_LN854556.1_2001136_2002564_-	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|486aa|down_1|NZ_LN854556.1_2002576_2004034_-	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|101aa|down_2|NZ_LN854556.1_2004035_2004338_-	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|513aa|down_3|NZ_LN854556.1_2004704_2006243_+	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter	NA|400aa|down_4|NZ_LN854556.1_2006782_2007982_-	COG4851, CamS, Protein involved in sex pheromone biosynthesis [General function prediction only]	NA|668aa|down_5|NZ_LN854556.1_2007994_2009998_-	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|731aa|down_6|NZ_LN854556.1_2010001_2012194_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|231aa|down_7|NZ_LN854556.1_2012190_2012883_-	COG1646, COG1646, Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]	NA|101aa|down_8|NZ_LN854556.1_2013054_2013357_-	COG4496, COG4496, Uncharacterized protein conserved in bacteria [Function unknown]	NA|432aa|down_9|NZ_LN854556.1_2013464_2014760_-	cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase (ASL)_subgroup 1
GCF_900004855.1_BB155	NZ_LN854556	Staphylococcus aureus strain B155 chromosome 1	4	2180330-2180425	4	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTTATGCAG	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|NZ_LN854556.1_2175004_2175235_-,NA|364aa|up_0|NZ_LN854556.1_2179222_2180314_+,NA|31aa|down_0|NZ_LN854556.1_2180521_2180614_+	NA|237aa|up_9|NZ_LN854556.1_2170630_2171341_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_LN854556.1_2171460_2171904_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_LN854556.1_2172103_2172517_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_LN854556.1_2172958_2174332_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_LN854556.1_2175004_2175235_-	NA	NA|313aa|up_4|NZ_LN854556.1_2175265_2176204_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_LN854556.1_2176641_2177307_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_LN854556.1_2177458_2177779_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_LN854556.1_2177780_2178761_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_LN854556.1_2179222_2180314_+	NA	NA|31aa|down_0|NZ_LN854556.1_2180521_2180614_+	NA	NA|286aa|down_1|NZ_LN854556.1_2180761_2181619_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_2|NZ_LN854556.1_2181686_2182469_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|439aa|down_3|NZ_LN854556.1_2182776_2184093_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|602aa|down_4|NZ_LN854556.1_2184196_2186002_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|NZ_LN854556.1_2186682_2188221_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|NZ_LN854556.1_2188255_2190388_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|NZ_LN854556.1_2190399_2190834_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|NZ_LN854556.1_2190833_2191940_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2446aa|down_9|NZ_LN854556.1_2192258_2199596_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
GCF_900004855.1_BB155	NZ_LN854556	Staphylococcus aureus strain B155 chromosome 1	5	2445211-2445293	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	GGGCCCCAACACAGAAGCTGGCGGCAG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|61aa|down_1|NZ_LN854556.1_2446414_2446597_-	NA|226aa|up_9|NZ_LN854556.1_2431384_2432062_-	pfam02665, Nitrate_red_gam, Nitrate reductase gamma subunit	NA|192aa|up_8|NZ_LN854556.1_2432054_2432630_-	COG2180, NarJ, Nitrate reductase delta subunit [Energy production and conversion]	NA|520aa|up_7|NZ_LN854556.1_2432622_2434182_-	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion]	NA|1230aa|up_6|NZ_LN854556.1_2434171_2437861_-	COG5013, NarG, Nitrate reductase alpha subunit [Energy production and conversion]	NA|326aa|up_5|NZ_LN854556.1_2438170_2439148_-	TIGR01469, Uroporphyrinogen-III_C-methyltransferase, uroporphyrin-III C-methyltransferase	NA|105aa|up_4|NZ_LN854556.1_2439138_2439453_-	cd03530, Rieske_NirD_small_Bacillus, Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain	NA|802aa|up_3|NZ_LN854556.1_2439456_2441862_-	COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion]	NA|256aa|up_2|NZ_LN854556.1_2441889_2442657_-	COG2138, COG2138, Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]	NA|179aa|up_1|NZ_LN854556.1_2442885_2443422_-	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|439aa|up_0|NZ_LN854556.1_2443617_2444934_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|275aa|down_0|NZ_LN854556.1_2445387_2446212_-	COG2116, FocA, Formate/nitrite family of transporters [Inorganic ion transport and metabolism]	NA|61aa|down_1|NZ_LN854556.1_2446414_2446597_-	NA	NA|156aa|down_2|NZ_LN854556.1_2446683_2447151_-	COG3832, COG3832, Uncharacterized conserved protein [Function unknown]	NA|516aa|down_3|NZ_LN854556.1_2447336_2448884_-	pfam09223, ZinT, ZinT (YodA) periplasmic lipocalin-like zinc-recruitment	NA|89aa|down_4|NZ_LN854556.1_2449177_2449444_-	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system	NA|84aa|down_5|NZ_LN854556.1_2449443_2449695_-	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|200aa|down_6|NZ_LN854556.1_2449967_2450567_-	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]	NA|121aa|down_7|NZ_LN854556.1_2450585_2450948_-	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|417aa|down_8|NZ_LN854556.1_2451203_2452454_+	pfam02388, FemAB, FemAB family	NA|244aa|down_9|NZ_LN854556.1_2452548_2453280_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
