The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP053800	Vibrio cholerae strain SO5Y chromosome 1, complete sequence	2947270	654834	661452	2947270		Staphylococcus_phage(66.67%)	7	NA	NA
WP_000210573.1|654834_655968_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.4e-64
WP_000366562.1|655979_657230_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	49.5	5.0e-100
WP_000543544.1|657330_657780_+	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_175235565.1|657805_658909_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	32.9	1.0e-43
WP_000493874.1|658913_659567_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	38.2	1.2e-31
WP_001122865.1|659607_660717_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.8	6.7e-64
WP_000864130.1|660981_661452_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	48.7	6.8e-34
>prophage 2
NZ_CP053800	Vibrio cholerae strain SO5Y chromosome 1, complete sequence	2947270	1510148	1536470	2947270		Vibrio_phage(78.57%)	19	NA	NA
WP_000948763.1|1510148_1510460_+	hypothetical protein	NA	E3U9J1	Vibrio_phage	100.0	6.6e-09
WP_149595898.1|1510594_1510954_+	regulator	NA	G8IRV3	Vibrio_phage	93.2	8.5e-61
WP_175235884.1|1511023_1511344_-	hypothetical protein	NA	NA	NA	NA	NA
WP_102786847.1|1511429_1511672_-	ADP-ribosyl-(dinitrogen reductase) hydrolase	NA	NA	NA	NA	NA
WP_102786846.1|1511962_1512160_-	YegP family protein	NA	NA	NA	NA	NA
WP_175235671.1|1513016_1514384_-	toxin	NA	Q64EV0	Vibrio_phage	97.1	9.9e-259
WP_001160095.1|1514386_1514731_-	DUF2523 domain-containing protein	NA	Q64EV1	Vibrio_phage	100.0	4.8e-61
WP_095467298.1|1514730_1516071_-	hypothetical protein	NA	G8IRU9	Vibrio_phage	60.2	1.5e-49
WP_000672170.1|1516203_1516413_-	hypothetical protein	NA	G8IRU8	Vibrio_phage	81.2	1.1e-20
WP_001900021.1|1516446_1516677_-	hypothetical protein	NA	G8IRU7	Vibrio_phage	94.7	3.9e-35
WP_001284206.1|1516686_1517025_-	DUF1293 domain-containing protein	NA	Q858R2	Vibrio_phage	96.4	1.3e-55
WP_001112192.1|1517029_1518133_-	replication initiation factor domain-containing protein	NA	Q64EV8	Vibrio_phage	100.0	1.5e-220
WP_000502184.1|1518122_1518326_-	hypothetical protein	NA	C3W4P3	Vibrio_phage	100.0	2.7e-35
WP_001018568.1|1518336_1518585_-	hypothetical protein	NA	O56843	Vibrio_virus	65.9	1.8e-22
WP_148520450.1|1518763_1519120_+	regulator	NA	Q9MCC3	Vibrio_phage	57.9	4.8e-32
WP_175235673.1|1519443_1533081_-	MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin RtxA	NA	B3Y8K3	Vibrio_virus	100.0	8.4e-07
WP_001881196.1|1533104_1533566_-	RTX toxin-activating lysine-acyltransferase RtxC	NA	NA	NA	NA	NA
WP_001906284.1|1533591_1533939_-	hypothetical protein	NA	NA	NA	NA	NA
WP_154401350.1|1534364_1536470_+	RTX toxin T1SS ABC transporter subunit RtxB	NA	W8CYL7	Bacillus_phage	26.9	1.1e-38
>prophage 3
NZ_CP053800	Vibrio cholerae strain SO5Y chromosome 1, complete sequence	2947270	2262236	2269429	2947270		Anguillid_herpesvirus(16.67%)	9	NA	NA
WP_001162850.1|2262236_2262665_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	38.4	1.0e-20
WP_000107237.1|2262868_2264158_-	aminopeptidase PepB	NA	Q6GYZ8	Mycoplasma_phage	34.3	1.7e-34
WP_000872176.1|2264377_2264572_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_001124187.1|2264620_2264959_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_001196545.1|2264972_2266823_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	40.9	1.5e-105
WP_001105750.1|2266846_2267362_-	co-chaperone HscB	NA	NA	NA	NA	NA
WP_000301571.1|2267410_2267734_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	50.5	3.0e-25
WP_000331703.1|2267794_2268178_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	78.2	5.4e-53
WP_046126449.1|2268214_2269429_-	IscS subfamily cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	30.5	1.1e-32
>prophage 4
NZ_CP053800	Vibrio cholerae strain SO5Y chromosome 1, complete sequence	2947270	2501023	2508248	2947270		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
WP_001279365.1|2501023_2501911_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	41.1	4.1e-56
WP_025984303.1|2502178_2504767_+	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	23.0	2.2e-33
WP_000116739.1|2504860_2505868_-	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	34.2	6.0e-35
WP_000177561.1|2505941_2506877_-	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	34.7	7.8e-05
WP_000002982.1|2506876_2507503_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.1	2.0e-36
WP_175235832.1|2507495_2508248_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	52.8	3.1e-68
>prophage 1
NZ_CP053801	Vibrio cholerae strain SO5Y chromosome 2, complete sequence	1049608	321479	356213	1049608	holin,transposase	Staphylococcus_prophage(30.0%)	47	NA	NA
WP_001898459.1|321479_322439_-|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	37.5	2.3e-44
WP_175235977.1|322673_323036_+	hypothetical protein	NA	NA	NA	NA	NA
WP_057556422.1|323177_323714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050559285.1|323810_324164_+	DUF4144 domain-containing protein	NA	NA	NA	NA	NA
WP_175236095.1|324424_324685_+	DUF3709 domain-containing protein	NA	NA	NA	NA	NA
WP_108244118.1|325252_325291_+	hypothetical protein	NA	NA	NA	NA	NA
WP_046126196.1|325485_326022_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_095466608.1|326234_326501_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032473240.1|326813_326996_+	DUF645 family protein	NA	NA	NA	NA	NA
WP_175235979.1|327197_327584_+	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA	NA
WP_032469024.1|327811_328090_+	DUF3709 domain-containing protein	NA	NA	NA	NA	NA
WP_046127315.1|328402_328573_+	hypothetical protein	NA	NA	NA	NA	NA
WP_046126173.1|328572_328974_+	type II toxin-antitoxin system death-on-curing family toxin	NA	A0A222YZ88	Escherichia_phage	29.8	2.1e-07
WP_094393050.1|329113_330004_+	hypothetical protein	NA	NA	NA	NA	NA
WP_142741056.1|331664_331946_+	hypothetical protein	NA	NA	NA	NA	NA
WP_046126178.1|332116_332512_+	DUF3465 domain-containing protein	NA	NA	NA	NA	NA
WP_000691786.1|333299_333935_+	DUF2807 domain-containing protein	NA	NA	NA	NA	NA
WP_001896359.1|335099_336020_+|transposase	IS5-like element ISVch8 family transposase	transposase	A0A1V0E8E1	Vibrio_phage	88.7	6.0e-159
WP_032473262.1|336768_336948_+	DUF645 family protein	NA	NA	NA	NA	NA
WP_033839086.1|337243_337732_+	RDD family protein	NA	NA	NA	NA	NA
WP_019830302.1|337876_338293_+	DUF1311 domain-containing protein	NA	NA	NA	NA	NA
WP_175235981.1|338451_339225_+	NERD domain-containing protein	NA	A0A2R2ZH57	Clostridioides_phage	36.5	9.2e-28
WP_142741528.1|339360_339870_+	AAA family ATPase	NA	A0A097BYE2	Leuconostoc_phage	25.6	1.7e-06
WP_071180824.1|340028_340442_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_080476722.1|340757_340922_+	DUF645 family protein	NA	NA	NA	NA	NA
WP_175235983.1|341462_341567_+	acetyltransferase	NA	NA	NA	NA	NA
WP_000422095.1|341550_342024_+	hypothetical protein	NA	NA	NA	NA	NA
WP_057561119.1|342151_342640_+	dual specificity protein phosphatase family protein	NA	A0A2H4UUE0	Bodo_saltans_virus	33.3	4.1e-05
WP_001898459.1|342662_343622_-|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	37.5	2.3e-44
WP_142547423.1|343988_344162_+	DUF3709 domain-containing protein	NA	NA	NA	NA	NA
WP_017044877.1|344495_345152_+	hypothetical protein	NA	NA	NA	NA	NA
WP_142741524.1|345287_345629_+	hypothetical protein	NA	NA	NA	NA	NA
WP_175235984.1|345768_346632_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001896359.1|346935_347856_+|transposase	IS5-like element ISVch8 family transposase	transposase	A0A1V0E8E1	Vibrio_phage	88.7	6.0e-159
WP_175235986.1|347981_348332_+	hypothetical protein	NA	NA	NA	NA	NA
WP_175236097.1|348337_348493_+	DUF3265 domain-containing protein	NA	NA	NA	NA	NA
WP_123012141.1|348492_348618_+	DUF3709 domain-containing protein	NA	NA	NA	NA	NA
WP_142741522.1|348638_348860_+	DUF3709 domain-containing protein	NA	NA	NA	NA	NA
WP_142741520.1|349138_349915_+|holin	choline kinase	holin	NA	NA	NA	NA
WP_175235988.1|350208_350391_+	DUF645 family protein	NA	NA	NA	NA	NA
WP_000107461.1|350649_350892_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001287986.1|351599_352025_+	riboflavin-specific deaminase	NA	A0A1V0SE20	Indivirus	54.0	5.4e-22
WP_000256034.1|352171_352606_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_043993103.1|352834_353101_+	hypothetical protein	NA	NA	NA	NA	NA
WP_142741518.1|353302_354289_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_142576968.1|354542_354923_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001898459.1|355253_356213_-|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	37.5	2.3e-44
