The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP053796	Vibrio cholerae strain SL4G chromosome 1, complete sequence	2954462	651385	657880	2954462		Staphylococcus_phage(66.67%)	7	NA	NA
WP_002053364.1|651385_652519_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.1	3.1e-64
WP_000366562.1|652530_653781_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	49.5	5.0e-100
WP_000543544.1|653881_654331_+	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_057556928.1|654356_655460_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	32.9	7.7e-44
WP_000493874.1|655464_656118_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	38.2	1.2e-31
WP_001122865.1|656158_657268_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.8	6.7e-64
WP_113593327.1|657409_657880_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	48.0	3.4e-33
>prophage 2
NZ_CP053796	Vibrio cholerae strain SL4G chromosome 1, complete sequence	2954462	1506699	1533304	2954462		Vibrio_phage(73.33%)	18	NA	NA
WP_000948761.1|1506699_1507011_+	hypothetical protein	NA	E3U9J1	Vibrio_phage	100.0	6.6e-09
WP_175249753.1|1507141_1507498_+	phage protein	NA	G8IRV3	Vibrio_phage	93.2	5.5e-60
WP_175249692.1|1507538_1507931_-	SH3 domain-containing protein	NA	A0A1L5C2A2	Pseudoalteromonas_phage	46.0	1.1e-24
WP_175249754.1|1508123_1508864_-	hypothetical protein	NA	NA	NA	NA	NA
WP_175249755.1|1509856_1511224_-	toxin	NA	Q64EV0	Vibrio_phage	99.1	2.6e-259
WP_001160095.1|1511226_1511571_-	DUF2523 domain-containing protein	NA	Q64EV1	Vibrio_phage	100.0	4.8e-61
WP_053034455.1|1511570_1512905_-	hypothetical protein	NA	G8IRU9	Vibrio_phage	82.0	3.8e-69
WP_000672170.1|1513037_1513247_-	hypothetical protein	NA	G8IRU8	Vibrio_phage	81.2	1.1e-20
WP_001900021.1|1513280_1513511_-	hypothetical protein	NA	G8IRU7	Vibrio_phage	94.7	3.9e-35
WP_001284206.1|1513520_1513859_-	DUF1293 domain-containing protein	NA	Q858R2	Vibrio_phage	96.4	1.3e-55
WP_001112192.1|1513863_1514967_-	replication initiation factor domain-containing protein	NA	Q64EV8	Vibrio_phage	100.0	1.5e-220
WP_069648025.1|1514956_1515160_-	hypothetical protein	NA	E1CJD3	Vibrio_phage	98.5	3.5e-35
WP_175249756.1|1515170_1515419_-	hypothetical protein	NA	O56843	Vibrio_virus	82.9	1.3e-31
WP_000288487.1|1515597_1515954_+	hypothetical protein	NA	Q9MCC3	Vibrio_phage	58.7	9.7e-33
WP_175249757.1|1516277_1529915_-	MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin RtxA	NA	B3Y8K3	Vibrio_virus	100.0	8.4e-07
WP_001881196.1|1529938_1530400_-	RTX toxin-activating lysine-acyltransferase RtxC	NA	NA	NA	NA	NA
WP_001906284.1|1530425_1530773_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157951529.1|1531198_1533304_+	RTX toxin T1SS ABC transporter subunit RtxB	NA	W8CYL7	Bacillus_phage	27.1	4.9e-39
>prophage 3
NZ_CP053796	Vibrio cholerae strain SL4G chromosome 1, complete sequence	2954462	1782855	1830889	2954462	portal,integrase,tail,plate,lysis,capsid,terminase,tRNA	Vibrio_phage(61.54%)	59	1793025:1793040	1840149:1840164
WP_175249768.1|1782855_1784112_-	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	43.4	2.8e-90
WP_032468873.1|1784111_1784519_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1B1ITQ0	uncultured_Mediterranean_phage	46.6	6.1e-23
WP_002051960.1|1784591_1784807_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002051958.1|1785051_1785324_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_175249769.1|1785424_1785964_+	hypothetical protein	NA	NA	NA	NA	NA
WP_175249770.1|1785952_1786963_-|tail	phage tail protein	tail	R9TNM7	Vibrio_phage	39.8	1.7e-61
WP_094392035.1|1786953_1787160_-|tail	tail protein X	tail	R9TR63	Vibrio_phage	50.7	2.2e-13
WP_000179074.1|1787143_1787539_-|tail	phage tail protein	tail	R9TMP6	Vibrio_phage	48.1	4.7e-28
WP_175249771.1|1787538_1789320_-|tail	phage tail protein	tail	R9TRP8	Vibrio_phage	42.4	5.3e-111
WP_088127481.1|1789423_1789726_-|tail	phage tail assembly protein	tail	Q75QK8	Wolbachia_phage	39.2	1.4e-08
WP_175249772.1|1789777_1790293_-|tail	phage major tail tube protein	tail	R9TR65	Vibrio_phage	38.5	9.5e-21
WP_175249773.1|1790292_1791759_-|tail	phage tail sheath subtilisin-like domain-containing protein	tail	R9TMQ0	Vibrio_phage	48.2	1.0e-120
WP_094392030.1|1791847_1792372_-|tail	phage tail protein	tail	Q8HA51	Vibrio_phage	93.7	2.2e-89
1793025:1793040	attL	CAATCACTTGTCCTGT	NA	NA	NA	NA
WP_094392029.1|1793503_1794061_-|tail	phage tail protein I	tail	R9TR33	Vibrio_phage	63.2	1.9e-62
WP_094392028.1|1794060_1794939_-|plate	baseplate J/gp47 family protein	plate	R9TML5	Vibrio_phage	46.5	2.3e-67
WP_094392027.1|1794935_1795277_-	GPW/gp25 family protein	NA	A0A088FV58	Escherichia_phage	60.4	9.3e-33
WP_175249774.1|1795278_1795926_-|plate	phage baseplate assembly protein V	plate	R4JMH2	Burkholderia_phage	37.7	2.0e-12
WP_053033974.1|1795922_1796447_-	hypothetical protein	NA	R9TNK0	Vibrio_phage	37.0	3.5e-23
WP_053033973.1|1796439_1797045_-|tail	phage tail protein	tail	R9TR34	Vibrio_phage	54.2	7.9e-59
WP_057568775.1|1797007_1797358_-	hypothetical protein	NA	R9TMM0	Vibrio_phage	54.3	1.7e-29
WP_175249775.1|1797350_1797647_-	hypothetical protein	NA	NA	NA	NA	NA
WP_175249776.1|1797699_1799679_-|capsid	phage major capsid protein	capsid	V5YSS9	Pseudomonas_phage	48.1	8.4e-158
WP_095461693.1|1799635_1801204_-|portal	phage portal protein	portal	A0A088FVG5	Escherichia_phage	42.7	1.3e-116
WP_000236573.1|1801203_1801731_-	hypothetical protein	NA	NA	NA	NA	NA
WP_175249830.1|1801724_1803677_-|terminase	phage terminase large subunit family protein	terminase	A2I2W6	Vibrio_virus	58.9	7.6e-212
WP_175249777.1|1803687_1804257_-|terminase	terminase small subunit	terminase	B0ZSE9	Halomonas_phage	38.2	6.4e-26
WP_148524536.1|1804701_1805931_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A067ZJC5	Vibrio_phage	33.4	4.8e-55
WP_119299414.1|1806214_1806697_-|lysis	lysis protein	lysis	G0ZNC9	Cronobacter_phage	31.1	7.1e-10
WP_053033964.1|1806669_1807158_-	lysozyme	NA	A0A1U9GSH3	Vibrio_phage	80.1	8.6e-72
WP_053033963.1|1807144_1807336_-	hypothetical protein	NA	A0A1V1FD92	Vibrio_phage	57.1	1.0e-12
WP_002051880.1|1807577_1808159_-	hypothetical protein	NA	NA	NA	NA	NA
WP_175249778.1|1808160_1808676_-	methyltransferase	NA	A0A2I7QS98	Vibrio_phage	59.7	2.2e-57
WP_053033960.1|1808672_1809305_-	hypothetical protein	NA	A0A2I7RNS2	Vibrio_phage	59.3	1.7e-64
WP_156844150.1|1809304_1809724_-	hypothetical protein	NA	A0A2I7RHJ7	Vibrio_phage	29.5	1.8e-06
WP_053034069.1|1809692_1810601_-	hypothetical protein	NA	A0A067ZIA1	Vibrio_phage	42.3	9.8e-21
WP_053033958.1|1810864_1811410_-	hypothetical protein	NA	NA	NA	NA	NA
WP_175249831.1|1811449_1811644_-	hypothetical protein	NA	NA	NA	NA	NA
WP_175249779.1|1811805_1812504_+	hypothetical protein	NA	D4HTY2	Vibrio_phage	48.4	2.9e-20
WP_032468854.1|1812893_1813151_+	hypothetical protein	NA	NA	NA	NA	NA
WP_053033957.1|1813147_1813525_+	hypothetical protein	NA	NA	NA	NA	NA
WP_053033956.1|1813588_1813822_+	hypothetical protein	NA	K4I1E3	Acidithiobacillus_phage	50.8	1.1e-08
WP_175249780.1|1813825_1814560_+	hypothetical protein	NA	A0A067ZJD1	Vibrio_phage	72.6	8.0e-98
WP_053033954.1|1814597_1815599_+	nucleoid-associated protein YejK	NA	A0A1V0E8C0	Vibrio_phage	44.4	1.3e-77
WP_175249781.1|1815609_1815975_+	hypothetical protein	NA	A0A2I7S338	Vibrio_phage	50.4	4.1e-26
WP_175249782.1|1816025_1816598_+	3'-5' exoribonuclease	NA	NA	NA	NA	NA
WP_002051851.1|1816650_1816911_+	hypothetical protein	NA	R9TNM3	Vibrio_phage	55.3	2.1e-16
WP_002051850.1|1817045_1817342_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002051848.1|1817338_1818532_-|integrase	tyrosine-type recombinase/integrase	integrase	K7P7J2	Enterobacteria_phage	47.3	2.7e-103
WP_175249783.1|1818713_1820138_+	exodeoxyribonuclease I	NA	NA	NA	NA	NA
WP_046127346.1|1820169_1820544_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_046126653.1|1820534_1821209_+	LrgB family protein	NA	NA	NA	NA	NA
WP_046126652.1|1821378_1822266_+	cytidine deaminase	NA	NA	NA	NA	NA
WP_000462870.1|1822424_1823300_+	AEC family transporter	NA	NA	NA	NA	NA
WP_000468079.1|1823453_1824629_+	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
WP_046126650.1|1824723_1825380_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_000054941.1|1825848_1826628_+	(p)ppGpp synthetase RelV	NA	NA	NA	NA	NA
WP_001229260.1|1826756_1827053_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	41.1	2.4e-13
WP_046126647.1|1827491_1829879_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	A0A1L3IZU3	BeAn_58058_virus	25.6	2.3e-08
WP_001164214.1|1829905_1830889_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.7	6.9e-36
1840149:1840164	attR	CAATCACTTGTCCTGT	NA	NA	NA	NA
>prophage 4
NZ_CP053796	Vibrio cholerae strain SL4G chromosome 1, complete sequence	2954462	2290706	2297899	2954462		Anguillid_herpesvirus(16.67%)	9	NA	NA
WP_001162850.1|2290706_2291135_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	38.4	1.0e-20
WP_095488087.1|2291338_2292628_-	aminopeptidase PepB	NA	Q6GYZ8	Mycoplasma_phage	34.3	7.6e-35
WP_000872174.1|2292847_2293042_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_001124187.1|2293090_2293429_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_001196554.1|2293442_2295293_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	41.1	7.0e-106
WP_002043422.1|2295316_2295832_-	co-chaperone HscB	NA	NA	NA	NA	NA
WP_000301571.1|2295880_2296204_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	50.5	3.0e-25
WP_000331703.1|2296264_2296648_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	78.2	5.4e-53
WP_000775249.1|2296684_2297899_-	IscS subfamily cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	30.8	8.8e-33
>prophage 5
NZ_CP053796	Vibrio cholerae strain SL4G chromosome 1, complete sequence	2954462	2529354	2536579	2954462		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
WP_001279362.1|2529354_2530242_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	41.1	4.1e-56
WP_095487753.1|2530509_2533098_+	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	23.2	5.8e-34
WP_000116735.1|2533191_2534199_-	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	34.2	6.0e-35
WP_000171040.1|2534272_2535208_-	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	34.7	7.8e-05
WP_000002982.1|2535207_2535834_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.1	2.0e-36
WP_000698379.1|2535826_2536579_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	53.3	8.0e-69
>prophage 1
NZ_CP053797	Vibrio cholerae strain SL4G chromosome 2, complete sequence	1173143	516781	525723	1173143		Vibrio_phage(90.91%)	13	NA	NA
WP_000164568.1|516781_517138_+	phage protein	NA	G8IRV3	Vibrio_phage	94.9	1.7e-61
WP_175249923.1|517157_517268_-	DUF3265 domain-containing protein	NA	NA	NA	NA	NA
WP_175231495.1|517270_518581_-	deoxyguanosinetriphosphate triphosphohydrolase family protein	NA	NA	NA	NA	NA
WP_142727101.1|519559_520927_-	toxin	NA	Q64EV0	Vibrio_phage	99.6	5.3e-260
WP_001160095.1|520929_521274_-	DUF2523 domain-containing protein	NA	Q64EV1	Vibrio_phage	100.0	4.8e-61
WP_175249866.1|521273_522671_-	hypothetical protein	NA	Q64EV4	Vibrio_phage	93.3	1.3e-160
WP_000672170.1|522805_523015_-	hypothetical protein	NA	G8IRU8	Vibrio_phage	81.2	1.1e-20
WP_001900021.1|523048_523279_-	hypothetical protein	NA	G8IRU7	Vibrio_phage	94.7	3.9e-35
WP_001284206.1|523288_523627_-	DUF1293 domain-containing protein	NA	Q858R2	Vibrio_phage	96.4	1.3e-55
WP_001112192.1|523631_524735_-	replication initiation factor domain-containing protein	NA	Q64EV8	Vibrio_phage	100.0	1.5e-220
WP_142565081.1|524724_524928_-	hypothetical protein	NA	C3W4P3	Vibrio_phage	98.5	3.5e-35
WP_001018569.1|524938_525187_-	hypothetical protein	NA	O56843	Vibrio_virus	65.9	1.8e-22
WP_175249867.1|525354_525723_+	hypothetical protein	NA	G8IRV4	Vibrio_phage	84.7	8.2e-51
