assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013357545.1_ASM1335754v1	NZ_CP053684	Proteus mirabilis strain MPE5139 chromosome, complete genome	1	418866-419005	1	PILER-CR	no	TnsE_C	cas3,c2c9_V-U4,TnsE_C,DEDDh,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL	Orphan	CCCAGTTCCCAACTATTTTGTCA	23	0	0	NA	NA	NA	2	2	Orphan	cas3,c2c9_V-U4,TnsE_C,DEDDh,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL	NA|126aa|up_8|NZ_CP053684.1_413036_413414_-,NA|124aa|up_7|NZ_CP053684.1_413823_414195_-,NA|166aa|up_6|NZ_CP053684.1_414255_414753_-,NA	TnsE_C|539aa|up_9|NZ_CP053684.1_411189_412806_+	pfam18623, TnsE_C, TnsE C-terminal domain	NA|126aa|up_8|NZ_CP053684.1_413036_413414_-	NA	NA|124aa|up_7|NZ_CP053684.1_413823_414195_-	NA	NA|166aa|up_6|NZ_CP053684.1_414255_414753_-	NA	NA|263aa|up_5|NZ_CP053684.1_414828_415617_-	PRK13746, PRK13746, aminoglycoside resistance protein; Provisional	NA|175aa|up_4|NZ_CP053684.1_415674_416199_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|158aa|up_3|NZ_CP053684.1_416293_416767_-	cd00209, DHFR, Dihydrofolate reductase (DHFR)	NA|179aa|up_2|NZ_CP053684.1_417098_417635_+	TIGR02249, Integrase/recombinase_E2_protein	NA|109aa|up_1|NZ_CP053684.1_417749_418076_+	TIGR02249, Integrase/recombinase_E2_protein	NA|80aa|up_0|NZ_CP053684.1_418263_418503_-	pfam08849, DUF1819, Putative inner membrane protein (DUF1819)	NA|359aa|down_0|NZ_CP053684.1_419412_420489_+	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein	NA|564aa|down_1|NZ_CP053684.1_420501_422193_+	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein	NA|336aa|down_2|NZ_CP053684.1_422241_423249_+	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein	NA|376aa|down_3|NZ_CP053684.1_423313_424441_+	TIGR03364, putative_secreted_oxidoreductase, FAD dependent oxidoreductase TIGR03364	NA|135aa|down_4|NZ_CP053684.1_424515_424920_-	pfam06836, DUF1240, Protein of unknown function (DUF1240)	NA|135aa|down_5|NZ_CP053684.1_425137_425542_-	pfam06836, DUF1240, Protein of unknown function (DUF1240)	NA|96aa|down_6|NZ_CP053684.1_425597_425885_-	pfam10840, DUF2645, Protein of unknown function (DUF2645)	NA|271aa|down_7|NZ_CP053684.1_425973_426786_-	PRK13478, PRK13478, phosphonoacetaldehyde hydrolase; Provisional	NA|378aa|down_8|NZ_CP053684.1_427660_428794_+	cd03885, M20_CPDG2, M20 Peptidase Glutamate carboxypeptidase, a periplasmic enzyme	NA|469aa|down_9|NZ_CP053684.1_428803_430210_+	COG1288, COG1288, Predicted membrane protein [Function unknown]
GCF_013357545.1_ASM1335754v1	NZ_CP053684	Proteus mirabilis strain MPE5139 chromosome, complete genome	2	2927936-2928091	1	CRISPRCasFinder	no		cas3,c2c9_V-U4,TnsE_C,DEDDh,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL	Orphan	ATAATTGCCTTTAGGTTGATATTT	24	0	0	NA	NA	NA	2	2	Orphan	cas3,c2c9_V-U4,TnsE_C,DEDDh,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL	NA|546aa|up_6|NZ_CP053684.1_2918417_2920055_-,NA|115aa|down_2|NZ_CP053684.1_2930664_2931009_-,NA|271aa|down_4|NZ_CP053684.1_2931700_2932513_-,NA|107aa|down_5|NZ_CP053684.1_2932481_2932802_-,NA|163aa|down_6|NZ_CP053684.1_2932814_2933303_-,NA|153aa|down_8|NZ_CP053684.1_2935691_2936150_-,NA|151aa|down_9|NZ_CP053684.1_2936209_2936662_-	NA|187aa|up_9|NZ_CP053684.1_2916091_2916652_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|286aa|up_8|NZ_CP053684.1_2916714_2917572_-	PRK06680, PRK06680, D-amino acid aminotransferase; Reviewed	NA|193aa|up_7|NZ_CP053684.1_2917758_2918337_+	PRK10209, PRK10209, HdeD family acid-resistance protein	NA|546aa|up_6|NZ_CP053684.1_2918417_2920055_-	NA	NA|419aa|up_5|NZ_CP053684.1_2920654_2921911_+	pfam00924, MS_channel, Mechanosensitive ion channel	NA|813aa|up_4|NZ_CP053684.1_2922263_2924702_+	TIGR02166, Putative_dimethyl_sulfoxide_reductase_chain_YnfE, anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family	NA|206aa|up_3|NZ_CP053684.1_2924713_2925331_+	TIGR02951, anaerobic_dimethyl_sulfoxide_reductase_subunit_B, DMSO reductase, iron-sulfur subunit	NA|259aa|up_2|NZ_CP053684.1_2925334_2926111_+	COG3302, DmsC, DMSO reductase anchor subunit [General function prediction only]	NA|181aa|up_1|NZ_CP053684.1_2926226_2926769_-	pfam06041, DUF924, Bacterial protein of unknown function (DUF924)	NA|60aa|up_0|NZ_CP053684.1_2927337_2927517_+	pfam10753, Toxin_GhoT_OrtT, Toxin GhoT_OrtT	NA|219aa|down_0|NZ_CP053684.1_2928831_2929488_-	pfam11041, DUF2612, Protein of unknown function (DUF2612)	NA|396aa|down_1|NZ_CP053684.1_2929484_2930672_-	pfam04865, Baseplate_J, Baseplate J-like protein	NA|115aa|down_2|NZ_CP053684.1_2930664_2931009_-	NA	NA|231aa|down_3|NZ_CP053684.1_2931005_2931698_-	pfam18352, Gp138_N, Phage protein Gp138 N-terminal domain	NA|271aa|down_4|NZ_CP053684.1_2931700_2932513_-	NA	NA|107aa|down_5|NZ_CP053684.1_2932481_2932802_-	NA	NA|163aa|down_6|NZ_CP053684.1_2932814_2933303_-	NA	NA|768aa|down_7|NZ_CP053684.1_2933305_2935609_-	COG5412, COG5412, Phage-related protein [Function unknown]	NA|153aa|down_8|NZ_CP053684.1_2935691_2936150_-	NA	NA|151aa|down_9|NZ_CP053684.1_2936209_2936662_-	NA
GCF_013357545.1_ASM1335754v1	NZ_CP053684	Proteus mirabilis strain MPE5139 chromosome, complete genome	3	3005665-3005938	1,2,2	CRT,CRISPRCasFinder,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,c2c9_V-U4,TnsE_C,DEDDh,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL	Type I-E	CGGTTCATCCCCGTATACACGGGGAACAC,ATCCCCGTATACACGGGGAACAC,CGGTTCATCCCCGTATACACGGGGAACAC	29,23,29	0	0	NA	NA	I-E:NA:I-E	4,4,3	4	TypeI-E	cas3,c2c9_V-U4,TnsE_C,DEDDh,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL	NA,NA	NA|221aa|up_9|NZ_CP053684.1_2994400_2995063_-	PRK11587, PRK11587, putative phosphatase; Provisional	NA|165aa|up_8|NZ_CP053684.1_2995097_2995592_-	PRK05445, PRK05445, YfbU family protein	NA|152aa|up_7|NZ_CP053684.1_2995732_2996188_-	PRK01816, PRK01816, hypothetical protein; Provisional	NA|401aa|up_6|NZ_CP053684.1_2996579_2997782_+	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|715aa|up_5|NZ_CP053684.1_2997859_3000004_+	PRK05632, PRK05632, phosphate acetyltransferase; Reviewed	NA|48aa|up_4|NZ_CP053684.1_3000340_3000484_+	pfam01848, HOK_GEF, Hok/gef family	NA|48aa|up_3|NZ_CP053684.1_3000881_3001025_+	pfam01848, HOK_GEF, Hok/gef family	NA|48aa|up_2|NZ_CP053684.1_3001421_3001565_+	pfam01848, HOK_GEF, Hok/gef family	NA|800aa|up_1|NZ_CP053684.1_3001795_3004195_+	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family	NA|408aa|up_0|NZ_CP053684.1_3004272_3005496_-	PRK13340, PRK13340, alanine racemase; Reviewed	cas2|99aa|down_0|NZ_CP053684.1_3005996_3006293_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP053684.1_3006295_3007216_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|226aa|down_2|NZ_CP053684.1_3007216_3007894_-	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas5|246aa|down_3|NZ_CP053684.1_3007893_3008631_-	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|345aa|down_4|NZ_CP053684.1_3008643_3009678_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|196aa|down_5|NZ_CP053684.1_3009735_3010323_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|533aa|down_6|NZ_CP053684.1_3010309_3011908_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|898aa|down_7|NZ_CP053684.1_3011904_3014598_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|419aa|down_8|NZ_CP053684.1_3015611_3016868_-	PRK09410, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed	NA|96aa|down_9|NZ_CP053684.1_3016878_3017166_-	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)
GCF_013357545.1_ASM1335754v1	NZ_CP053684	Proteus mirabilis strain MPE5139 chromosome, complete genome	4	3014843-3015481	3,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,c2c9_V-U4,TnsE_C,DEDDh,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL	Type I-E	CGGTTCATCCCCGTGCATACGGGGAACAC,CGGTTCATCCCCGTGCATACGGGGAACAC,CGGTTCATCCCCGTGCATACGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	10,10,10	10	TypeI-E	cas3,c2c9_V-U4,TnsE_C,DEDDh,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL	NA,NA	NA|800aa|up_9|NZ_CP053684.1_3001795_3004195_+	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family	NA|408aa|up_8|NZ_CP053684.1_3004272_3005496_-	PRK13340, PRK13340, alanine racemase; Reviewed	cas2|99aa|up_7|NZ_CP053684.1_3005996_3006293_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|up_6|NZ_CP053684.1_3006295_3007216_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|226aa|up_5|NZ_CP053684.1_3007216_3007894_-	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas5|246aa|up_4|NZ_CP053684.1_3007893_3008631_-	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|345aa|up_3|NZ_CP053684.1_3008643_3009678_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|196aa|up_2|NZ_CP053684.1_3009735_3010323_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|533aa|up_1|NZ_CP053684.1_3010309_3011908_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|898aa|up_0|NZ_CP053684.1_3011904_3014598_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|419aa|down_0|NZ_CP053684.1_3015611_3016868_-	PRK09410, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed	NA|96aa|down_1|NZ_CP053684.1_3016878_3017166_-	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|148aa|down_2|NZ_CP053684.1_3017195_3017639_-	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|349aa|down_3|NZ_CP053684.1_3017865_3018912_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|181aa|down_4|NZ_CP053684.1_3018908_3019451_-	PRK15393, PRK15393, NUDIX hydrolase YfcD; Provisional	NA|205aa|down_5|NZ_CP053684.1_3019647_3020262_+	PRK13972, PRK13972, GSH-dependent disulfide bond oxidoreductase; Provisional	NA|302aa|down_6|NZ_CP053684.1_3020326_3021232_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|194aa|down_7|NZ_CP053684.1_3021251_3021833_-	PRK06029, PRK06029, UbiX family flavin prenyltransferase	NA|506aa|down_8|NZ_CP053684.1_3021954_3023472_-	PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional	NA|164aa|down_9|NZ_CP053684.1_3023502_3023994_-	PRK10845, PRK10845, colicin V production protein; Provisional
GCF_013357545.1_ASM1335754v1	NZ_CP053684	Proteus mirabilis strain MPE5139 chromosome, complete genome	5	3261607-3261749	4	CRISPRCasFinder	no		cas3,c2c9_V-U4,TnsE_C,DEDDh,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL	Orphan	GGTGATATCAATTTCACAGGTGG	23	0	0	NA	NA	NA	2	2	Orphan	cas3,c2c9_V-U4,TnsE_C,DEDDh,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL	NA|74aa|up_8|NZ_CP053684.1_3252277_3252499_+,NA|143aa|up_7|NZ_CP053684.1_3252566_3252995_+,NA|49aa|up_1|NZ_CP053684.1_3259544_3259691_+,NA|68aa|up_0|NZ_CP053684.1_3259691_3259895_+,NA	NA|300aa|up_9|NZ_CP053684.1_3251175_3252075_+	PRK03635, PRK03635, ArgP/LysG family DNA-binding transcriptional regulator	NA|74aa|up_8|NZ_CP053684.1_3252277_3252499_+	NA	NA|143aa|up_7|NZ_CP053684.1_3252566_3252995_+	NA	NA|245aa|up_6|NZ_CP053684.1_3253162_3253897_-	PRK11087, PRK11087, oxidative stress defense protein; Provisional	NA|208aa|up_5|NZ_CP053684.1_3253987_3254611_-	PRK09304, PRK09304, arginine exporter ArgO	NA|287aa|up_4|NZ_CP053684.1_3254779_3255640_-	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS	NA|124aa|up_3|NZ_CP053684.1_3255731_3256103_-	PRK05248, PRK05248, hypothetical protein; Provisional	NA|866aa|up_2|NZ_CP053684.1_3256273_3258871_-	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated	NA|49aa|up_1|NZ_CP053684.1_3259544_3259691_+	NA	NA|68aa|up_0|NZ_CP053684.1_3259691_3259895_+	NA	NA|476aa|down_0|NZ_CP053684.1_3274198_3275626_-	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed	NA|622aa|down_1|NZ_CP053684.1_3275827_3277693_-	PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated	NA|889aa|down_2|NZ_CP053684.1_3277705_3280372_-	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed	NA|262aa|down_3|NZ_CP053684.1_3280535_3281321_-	PRK09464, pdhR, pyruvate dehydrogenase complex transcriptional repressor PdhR	NA|181aa|down_4|NZ_CP053684.1_3281632_3282175_-	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA|148aa|down_5|NZ_CP053684.1_3282385_3282829_+	PRK10574, PRK10574, putative major pilin subunit; Provisional	NA|368aa|down_6|NZ_CP053684.1_3282928_3284032_+	PRK10436, PRK10436, hypothetical protein; Provisional	NA|400aa|down_7|NZ_CP053684.1_3284028_3285228_+	PRK10573, PRK10573, protein transport protein HofC	NA|205aa|down_8|NZ_CP053684.1_3285505_3286120_+	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|251aa|down_9|NZ_CP053684.1_3286122_3286875_+	PRK05287, PRK05287, cell division protein ZapD
