assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013357525.1_ASM1335752v1	NZ_CP053718	Proteus mirabilis strain MPE4069 chromosome, complete genome	1	1277659-1277801	1	CRISPRCasFinder	no		TnsE_C,c2c9_V-U4,WYL,DEDDh,cas3,RT,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,PD-DExK	Orphan	CCACCTGTAAAATTGATATCACC	23	0	0	NA	NA	NA	2	2	Orphan	TnsE_C,c2c9_V-U4,WYL,DEDDh,cas3,RT,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,PD-DExK	NA,NA|68aa|down_0|NZ_CP053718.1_1279511_1279715_-,NA|49aa|down_1|NZ_CP053718.1_1279715_1279862_-,NA|143aa|down_7|NZ_CP053718.1_1286411_1286840_-,NA|74aa|down_8|NZ_CP053718.1_1286907_1287129_-	NA|251aa|up_9|NZ_CP053718.1_1252532_1253285_-	PRK05287, PRK05287, cell division protein ZapD	NA|205aa|up_8|NZ_CP053718.1_1253287_1253902_-	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|400aa|up_7|NZ_CP053718.1_1254179_1255379_-	PRK10573, PRK10573, protein transport protein HofC	NA|368aa|up_6|NZ_CP053718.1_1255375_1256479_-	PRK10436, PRK10436, hypothetical protein; Provisional	NA|148aa|up_5|NZ_CP053718.1_1256578_1257022_-	PRK10574, PRK10574, putative major pilin subunit; Provisional	NA|181aa|up_4|NZ_CP053718.1_1257232_1257775_+	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA|262aa|up_3|NZ_CP053718.1_1258086_1258872_+	PRK09464, pdhR, pyruvate dehydrogenase complex transcriptional repressor PdhR	NA|889aa|up_2|NZ_CP053718.1_1259035_1261702_+	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed	NA|622aa|up_1|NZ_CP053718.1_1261714_1263580_+	PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated	NA|476aa|up_0|NZ_CP053718.1_1263781_1265209_+	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed	NA|68aa|down_0|NZ_CP053718.1_1279511_1279715_-	NA	NA|49aa|down_1|NZ_CP053718.1_1279715_1279862_-	NA	NA|866aa|down_2|NZ_CP053718.1_1280535_1283133_+	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated	NA|124aa|down_3|NZ_CP053718.1_1283303_1283675_+	PRK05248, PRK05248, hypothetical protein; Provisional	NA|287aa|down_4|NZ_CP053718.1_1283766_1284627_+	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS	NA|208aa|down_5|NZ_CP053718.1_1284795_1285419_+	PRK09304, PRK09304, arginine exporter ArgO	NA|245aa|down_6|NZ_CP053718.1_1285509_1286244_+	PRK11087, PRK11087, oxidative stress defense protein; Provisional	NA|143aa|down_7|NZ_CP053718.1_1286411_1286840_-	NA	NA|74aa|down_8|NZ_CP053718.1_1286907_1287129_-	NA	NA|300aa|down_9|NZ_CP053718.1_1287331_1288231_-	PRK03635, PRK03635, ArgP/LysG family DNA-binding transcriptional regulator
GCF_013357525.1_ASM1335752v1	NZ_CP053718	Proteus mirabilis strain MPE4069 chromosome, complete genome	2	1521530-1522473	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	TnsE_C,c2c9_V-U4,WYL,DEDDh,cas3,RT,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,PD-DExK	Type I-E	GTGTTCCCCGTATGCACGGGGATGAACCG,GTGTTCCCCGTATGCACGGGGATGAACCG,GTGTTCCCCGTATGCACGGGGATGAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	15,15,12	15	TypeI-E	TnsE_C,c2c9_V-U4,WYL,DEDDh,cas3,RT,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,PD-DExK	NA,NA	NA|164aa|up_9|NZ_CP053718.1_1513016_1513508_+	PRK10845, PRK10845, colicin V production protein; Provisional	NA|506aa|up_8|NZ_CP053718.1_1513538_1515056_+	PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional	NA|194aa|up_7|NZ_CP053718.1_1515177_1515759_+	PRK06029, PRK06029, UbiX family flavin prenyltransferase	NA|302aa|up_6|NZ_CP053718.1_1515778_1516684_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|205aa|up_5|NZ_CP053718.1_1516748_1517363_-	PRK13972, PRK13972, GSH-dependent disulfide bond oxidoreductase; Provisional	NA|181aa|up_4|NZ_CP053718.1_1517559_1518102_+	PRK15393, PRK15393, NUDIX hydrolase YfcD; Provisional	NA|349aa|up_3|NZ_CP053718.1_1518098_1519145_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|148aa|up_2|NZ_CP053718.1_1519371_1519815_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|96aa|up_1|NZ_CP053718.1_1519844_1520132_+	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|419aa|up_0|NZ_CP053718.1_1520142_1521399_+	PRK09410, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed	cas3|898aa|down_0|NZ_CP053718.1_1522717_1525411_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|533aa|down_1|NZ_CP053718.1_1525407_1527006_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|196aa|down_2|NZ_CP053718.1_1526992_1527580_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|345aa|down_3|NZ_CP053718.1_1527646_1528681_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|246aa|down_4|NZ_CP053718.1_1528693_1529431_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|226aa|down_5|NZ_CP053718.1_1529430_1530108_+	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas1|307aa|down_6|NZ_CP053718.1_1530108_1531029_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|99aa|down_7|NZ_CP053718.1_1531031_1531328_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|408aa|down_8|NZ_CP053718.1_1531950_1533174_+	PRK13340, PRK13340, alanine racemase; Reviewed	NA|800aa|down_9|NZ_CP053718.1_1533251_1535651_-	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family
GCF_013357525.1_ASM1335752v1	NZ_CP053718	Proteus mirabilis strain MPE4069 chromosome, complete genome	3	1531387-1531782	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	TnsE_C,c2c9_V-U4,WYL,DEDDh,cas3,RT,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,PD-DExK	Type I-E	GTGTTCCCCGTGTATACGGGAATGAACC,GTGTTCCCCGTGTATACGGGAATGAACCG,GTGTTCCCCGTGTATACGGG	28,29,20	0	0	NA	NA	NA:NA:NA	5,6,6	6	TypeI-E	TnsE_C,c2c9_V-U4,WYL,DEDDh,cas3,RT,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,PD-DExK	NA,NA	NA|96aa|up_9|NZ_CP053718.1_1519844_1520132_+	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|419aa|up_8|NZ_CP053718.1_1520142_1521399_+	PRK09410, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed	cas3|898aa|up_7|NZ_CP053718.1_1522717_1525411_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|533aa|up_6|NZ_CP053718.1_1525407_1527006_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|196aa|up_5|NZ_CP053718.1_1526992_1527580_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|345aa|up_4|NZ_CP053718.1_1527646_1528681_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|246aa|up_3|NZ_CP053718.1_1528693_1529431_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|226aa|up_2|NZ_CP053718.1_1529430_1530108_+	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas1|307aa|up_1|NZ_CP053718.1_1530108_1531029_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|99aa|up_0|NZ_CP053718.1_1531031_1531328_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|408aa|down_0|NZ_CP053718.1_1531950_1533174_+	PRK13340, PRK13340, alanine racemase; Reviewed	NA|800aa|down_1|NZ_CP053718.1_1533251_1535651_-	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family	NA|48aa|down_2|NZ_CP053718.1_1535881_1536025_-	pfam01848, HOK_GEF, Hok/gef family	NA|48aa|down_3|NZ_CP053718.1_1536421_1536565_-	pfam01848, HOK_GEF, Hok/gef family	NA|48aa|down_4|NZ_CP053718.1_1536962_1537106_-	pfam01848, HOK_GEF, Hok/gef family	NA|715aa|down_5|NZ_CP053718.1_1537442_1539587_-	PRK05632, PRK05632, phosphate acetyltransferase; Reviewed	NA|401aa|down_6|NZ_CP053718.1_1539664_1540867_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|152aa|down_7|NZ_CP053718.1_1541258_1541714_+	PRK01816, PRK01816, hypothetical protein; Provisional	NA|165aa|down_8|NZ_CP053718.1_1541854_1542349_+	PRK05445, PRK05445, YfbU family protein	NA|221aa|down_9|NZ_CP053718.1_1542383_1543046_+	PRK11587, PRK11587, putative phosphatase; Provisional
GCF_013357525.1_ASM1335752v1	NZ_CP053718	Proteus mirabilis strain MPE4069 chromosome, complete genome	4	3619953-3620034	4	CRISPRCasFinder	no		TnsE_C,c2c9_V-U4,WYL,DEDDh,cas3,RT,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,PD-DExK	Orphan	CTTGTTCAGCTTCAAGTTGCGCTTGACG	28	0	0	NA	NA	NA	1	1	Orphan	TnsE_C,c2c9_V-U4,WYL,DEDDh,cas3,RT,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,PD-DExK	NA,NA	NA|283aa|up_9|NZ_CP053718.1_3608848_3609697_+	PRK10973, PRK10973, sn-glycerol-3-phosphate ABC transporter permease UgpE	NA|365aa|up_8|NZ_CP053718.1_3609698_3610793_+	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|251aa|up_7|NZ_CP053718.1_3611282_3612035_+	cd07334, M48C_loiP_like, Peptidase M48C Ste24p loiP-like, integral membrane protein	NA|159aa|up_6|NZ_CP053718.1_3612074_3612551_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|396aa|up_5|NZ_CP053718.1_3612665_3613853_+	cd17474, MFS_YfmO_like, Bacillus subtilis multidrug efflux protein YfmO and similar transporters of the Major Facilitator Superfamily	NA|139aa|up_4|NZ_CP053718.1_3613864_3614281_+	pfam12568, DUF3749, Acetyltransferase (GNAT) domain	NA|383aa|up_3|NZ_CP053718.1_3614256_3615405_-	pfam02595, Gly_kinase, Glycerate kinase family	NA|285aa|up_2|NZ_CP053718.1_3615499_3616354_-	PRK06596, PRK06596, RNA polymerase factor sigma-32; Reviewed	NA|326aa|up_1|NZ_CP053718.1_3616695_3617673_-	PRK11026, ftsX, cell division ABC transporter subunit FtsX; Provisional	NA|222aa|up_0|NZ_CP053718.1_3617665_3618331_-	PRK10908, PRK10908, cell division ATP-binding protein FtsE	NA|195aa|down_0|NZ_CP053718.1_3620402_3620987_+	PRK10909, rsmD, 16S rRNA m(2)G966-methyltransferase; Provisional	NA|98aa|down_1|NZ_CP053718.1_3621004_3621298_+	PRK10910, PRK10910, DUF1145 family protein	NA|135aa|down_2|NZ_CP053718.1_3621361_3621766_-	pfam10694, DUF2500, Protein of unknown function (DUF2500)	NA|209aa|down_3|NZ_CP053718.1_3621912_3622539_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|797aa|down_4|NZ_CP053718.1_3622709_3625100_+	PRK11033, zntA, zinc/cadmium/mercury/lead-transporting ATPase; Provisional	NA|1045aa|down_5|NZ_CP053718.1_3625186_3628321_-	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family	NA|380aa|down_6|NZ_CP053718.1_3628346_3629486_-	NF000247, MexA, MexA family multidrug efflux RND transporter periplasmic adaptor subunit	NA|85aa|down_7|NZ_CP053718.1_3630196_3630451_-	PRK00299, PRK00299, sulfurtransferase TusA	NA|225aa|down_8|NZ_CP053718.1_3630661_3631336_+	PRK11212, PRK11212, 7-cyano-7-deazaguanine/7-aminomethyl-7-deazaguanine transporter	NA|368aa|down_9|NZ_CP053718.1_3631655_3632759_+	PRK09423, gldA, glycerol dehydrogenase; Provisional
