assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013348785.1_ASM1334878v1	NZ_CP054691	Gordonia sp. X0973 chromosome, complete genome	1	2815516-2815598	1	CRISPRCasFinder	no		WYL,cas3,csa3,DinG,DEDDh,cas4	Orphan	CTCGGATCCACTCGACCACCCAG	23	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,DinG,DEDDh,cas4	NA|82aa|up_5|NZ_CP054691.1_2812555_2812801_+,NA|56aa|up_4|NZ_CP054691.1_2813038_2813206_-,NA|61aa|up_3|NZ_CP054691.1_2813217_2813400_+,NA	NA|250aa|up_9|NZ_CP054691.1_2808848_2809598_+	pfam02665, Nitrate_red_gam, Nitrate reductase gamma subunit	NA|415aa|up_8|NZ_CP054691.1_2809594_2810839_+	COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism]	NA|214aa|up_7|NZ_CP054691.1_2810864_2811506_-	pfam02909, TetR_C, Tetracyclin repressor, C-terminal all-alpha domain	NA|315aa|up_6|NZ_CP054691.1_2811590_2812535_+	cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|82aa|up_5|NZ_CP054691.1_2812555_2812801_+	NA	NA|56aa|up_4|NZ_CP054691.1_2813038_2813206_-	NA	NA|61aa|up_3|NZ_CP054691.1_2813217_2813400_+	NA	NA|174aa|up_2|NZ_CP054691.1_2813443_2813965_+	pfam14231, GXWXG, GXWXG protein	NA|179aa|up_1|NZ_CP054691.1_2813970_2814507_+	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism]	NA|308aa|up_0|NZ_CP054691.1_2814513_2815437_-	TIGR03564, F420_MSMEG_4879, F420-dependent oxidoreductase, MSMEG_4879 family	NA|62aa|down_0|NZ_CP054691.1_2815715_2815901_-	PRK08061, rpsN, type Z 30S ribosomal protein S14	NA|192aa|down_1|NZ_CP054691.1_2815916_2816492_-	PRK00010, rplE, 50S ribosomal protein L5; Validated	NA|106aa|down_2|NZ_CP054691.1_2816493_2816811_-	PRK00004, rplX, 50S ribosomal protein L24; Reviewed	NA|124aa|down_3|NZ_CP054691.1_2816812_2817184_-	PRK05483, rplN, 50S ribosomal protein L14; Validated	NA|374aa|down_4|NZ_CP054691.1_2817402_2818524_-	pfam03583, LIP, Secretory lipase	NA|343aa|down_5|NZ_CP054691.1_2818657_2819686_+	COG0627, COG0627, Predicted esterase [General function prediction only]	NA|5858aa|down_6|NZ_CP054691.1_2819696_2837270_-	PRK12467, PRK12467, peptide synthase; Provisional	NA|6742aa|down_7|NZ_CP054691.1_2837266_2857492_-	PRK12467, PRK12467, peptide synthase; Provisional	NA|2672aa|down_8|NZ_CP054691.1_2857488_2865504_-	PRK12467, PRK12467, peptide synthase; Provisional	NA|385aa|down_9|NZ_CP054691.1_2865956_2867111_+	TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit
GCF_013348785.1_ASM1334878v1	NZ_CP054691	Gordonia sp. X0973 chromosome, complete genome	2	2869858-2869993	2	CRISPRCasFinder	no		WYL,cas3,csa3,DinG,DEDDh,cas4	Orphan	GGGTCTCGATACACCGACTCGGCTAGCGCCTCGCCGGCACTCGACCACCGT	51	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,DinG,DEDDh,cas4	NA,NA	NA|374aa|up_9|NZ_CP054691.1_2817402_2818524_-	pfam03583, LIP, Secretory lipase	NA|343aa|up_8|NZ_CP054691.1_2818657_2819686_+	COG0627, COG0627, Predicted esterase [General function prediction only]	NA|5858aa|up_7|NZ_CP054691.1_2819696_2837270_-	PRK12467, PRK12467, peptide synthase; Provisional	NA|6742aa|up_6|NZ_CP054691.1_2837266_2857492_-	PRK12467, PRK12467, peptide synthase; Provisional	NA|2672aa|up_5|NZ_CP054691.1_2857488_2865504_-	PRK12467, PRK12467, peptide synthase; Provisional	NA|385aa|up_4|NZ_CP054691.1_2865956_2867111_+	TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit	NA|239aa|up_3|NZ_CP054691.1_2867200_2867917_+	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family	NA|283aa|up_2|NZ_CP054691.1_2867913_2868762_+	TIGR01248, drrC, daunorubicin resistance protein C	NA|131aa|up_1|NZ_CP054691.1_2868793_2869186_+	TIGR03666, Rv2061_F420, PPOX class probable F420-dependent enzyme, Rv2061 family	NA|204aa|up_0|NZ_CP054691.1_2869222_2869834_+	PRK05208, PRK05208, hypothetical protein; Provisional	NA|400aa|down_0|NZ_CP054691.1_2870233_2871433_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|297aa|down_1|NZ_CP054691.1_2871429_2872320_+	cd07938, DRE_TIM_HMGL, 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain	NA|187aa|down_2|NZ_CP054691.1_2872337_2872898_-	pfam13911, AhpC-TSA_2, AhpC/TSA antioxidant enzyme	NA|364aa|down_3|NZ_CP054691.1_2872894_2873986_-	pfam09995, DUF2236, Uncharacterized protein conserved in bacteria (DUF2236)	NA|96aa|down_4|NZ_CP054691.1_2874105_2874393_-	PRK05610, rpsQ, 30S ribosomal protein S17; Reviewed	NA|77aa|down_5|NZ_CP054691.1_2874389_2874620_-	PRK00306, PRK00306, 50S ribosomal protein L29; Reviewed	NA|139aa|down_6|NZ_CP054691.1_2874619_2875036_-	PRK09203, rplP, 50S ribosomal protein L16; Reviewed	NA|283aa|down_7|NZ_CP054691.1_2875038_2875887_-	PRK00310, rpsC, 30S ribosomal protein S3; Reviewed	NA|138aa|down_8|NZ_CP054691.1_2875886_2876300_-	PRK00565, rplV, 50S ribosomal protein L22; Reviewed	NA|94aa|down_9|NZ_CP054691.1_2876302_2876584_-	PRK00357, rpsS, 30S ribosomal protein S19; Reviewed
GCF_013348785.1_ASM1334878v1	NZ_CP054691	Gordonia sp. X0973 chromosome, complete genome	3	2952577-2952666	3	CRISPRCasFinder	no	csa3	WYL,cas3,csa3,DinG,DEDDh,cas4	Type I-A	CTCGACCACCCCCGGATCCACCGCCG	26	1	6	2952603-2952640|2952603-2952640|2952603-2952640|2952603-2952640|2952603-2952640|2952603-2952640	NZ_CP054691.1_3682988-3682951|NZ_CP054691.1_808280-808317|NZ_CP054691.1_957745-957782|NZ_CP054691.1_3070394-3070357|NZ_CP054691.1_2997276-2997313|NZ_CP054691.1_3622003-3621966	NA	1	1	Orphan	WYL,cas3,csa3,DinG,DEDDh,cas4	NA|342aa|up_2|NZ_CP054691.1_2949297_2950323_-,NA|433aa|up_1|NZ_CP054691.1_2950581_2951880_-,NA	NA|392aa|up_9|NZ_CP054691.1_2942720_2943896_-	cd01160, LCAD, Long chain acyl-CoA dehydrogenase	NA|572aa|up_8|NZ_CP054691.1_2943906_2945622_-	pfam07287, AtuA, Acyclic terpene utilisation family protein AtuA	NA|271aa|up_7|NZ_CP054691.1_2945614_2946427_-	TIGR03084, conserved_hypothetical_protein, TIGR03084 family protein	NA|224aa|up_6|NZ_CP054691.1_2946789_2947461_-	pfam12697, Abhydrolase_6, Alpha/beta hydrolase family	csa3|112aa|up_5|NZ_CP054691.1_2947527_2947863_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|157aa|up_4|NZ_CP054691.1_2947862_2948333_+	cd08900, SRPBCC_CalC_Aha1-like_7, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins	NA|293aa|up_3|NZ_CP054691.1_2948422_2949301_-	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|342aa|up_2|NZ_CP054691.1_2949297_2950323_-	NA	NA|433aa|up_1|NZ_CP054691.1_2950581_2951880_-	NA	NA|192aa|up_0|NZ_CP054691.1_2951884_2952460_-	pfam12680, SnoaL_2, SnoaL-like domain	NA|64aa|down_0|NZ_CP054691.1_2952765_2952957_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|456aa|down_1|NZ_CP054691.1_2952971_2954339_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|263aa|down_2|NZ_CP054691.1_2954349_2955138_-	PRK07775, PRK07775, SDR family oxidoreductase	NA|405aa|down_3|NZ_CP054691.1_2955137_2956352_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|200aa|down_4|NZ_CP054691.1_2956369_2956969_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|489aa|down_5|NZ_CP054691.1_2957076_2958543_+	TIGR04284, aldehyde_dehydrogenase, aldehyde dehydrogenase, Rv0768 family	NA|246aa|down_6|NZ_CP054691.1_2958721_2959459_+	PRK07774, PRK07774, SDR family oxidoreductase	NA|290aa|down_7|NZ_CP054691.1_2959455_2960325_+	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]	NA|133aa|down_8|NZ_CP054691.1_2960321_2960720_+	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown]	NA|91aa|down_9|NZ_CP054691.1_2960784_2961057_-	pfam05818, TraT, Enterobacterial TraT complement resistance protein
GCF_013348785.1_ASM1334878v1	NZ_CP054691	Gordonia sp. X0973 chromosome, complete genome	4	2968674-2968842	4	CRISPRCasFinder	no		WYL,cas3,csa3,DinG,DEDDh,cas4	Orphan	GGTGCCCACTCGGCGGGGTTGGGGTGCCCAC	31	1	3	2968771-2968811|2968771-2968811|2968771-2968811	NZ_CP054691.1_1301382-1301342|NZ_CP054691.1_2694612-2694572|NZ_CP054691.1_2694970-2695010	NA	2	2	Orphan	WYL,cas3,csa3,DinG,DEDDh,cas4	NA|311aa|up_6|NZ_CP054691.1_2962222_2963155_+,NA|240aa|up_5|NZ_CP054691.1_2963161_2963881_+,NA|250aa|down_9|NZ_CP054691.1_2979171_2979921_+	NA|133aa|up_9|NZ_CP054691.1_2960321_2960720_+	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown]	NA|91aa|up_8|NZ_CP054691.1_2960784_2961057_-	pfam05818, TraT, Enterobacterial TraT complement resistance protein	NA|302aa|up_7|NZ_CP054691.1_2961223_2962129_+	pfam04909, Amidohydro_2, Amidohydrolase	NA|311aa|up_6|NZ_CP054691.1_2962222_2963155_+	NA	NA|240aa|up_5|NZ_CP054691.1_2963161_2963881_+	NA	NA|225aa|up_4|NZ_CP054691.1_2963884_2964559_+	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|323aa|up_3|NZ_CP054691.1_2964545_2965514_-	cd08241, QOR1, Quinone oxidoreductase (QOR)	NA|224aa|up_2|NZ_CP054691.1_2965568_2966240_+	pfam13578, Methyltransf_24, Methyltransferase domain	NA|403aa|up_1|NZ_CP054691.1_2966204_2967413_-	COG3214, COG3214, Uncharacterized protein conserved in bacteria [Function unknown]	NA|286aa|up_0|NZ_CP054691.1_2967756_2968614_-	TIGR03619, F420_Rv2161c, probable F420-dependent oxidoreductase, Rv2161c family	NA|359aa|down_0|NZ_CP054691.1_2968852_2969929_-	COG3387, SGA1, Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|238aa|down_1|NZ_CP054691.1_2969931_2970645_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|417aa|down_2|NZ_CP054691.1_2970644_2971895_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|558aa|down_3|NZ_CP054691.1_2971920_2973594_-	PLN02852, PLN02852, ferredoxin-NADP+ reductase	NA|269aa|down_4|NZ_CP054691.1_2973685_2974492_+	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|260aa|down_5|NZ_CP054691.1_2974488_2975268_+	cd06158, S2P-M50_like_1, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms	NA|117aa|down_6|NZ_CP054691.1_2975276_2975627_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|134aa|down_7|NZ_CP054691.1_2975841_2976243_+	pfam05423, Mycobact_memb, Mycobacterium membrane protein	NA|943aa|down_8|NZ_CP054691.1_2976254_2979083_+	TIGR00833, Putative_membrane_protein_ActII-3, Transport protein	NA|250aa|down_9|NZ_CP054691.1_2979171_2979921_+	NA
GCF_013348785.1_ASM1334878v1	NZ_CP054691	Gordonia sp. X0973 chromosome, complete genome	5	2999352-2999443	5	CRISPRCasFinder	no		WYL,cas3,csa3,DinG,DEDDh,cas4	Orphan	CACTCGACCACCCCGGATCCACCGCCGG	28	1	6	2999380-2999415|2999380-2999415|2999380-2999415|2999380-2999415|2999380-2999415|2999380-2999415	NZ_CP054691.1_3070393-3070358|NZ_CP054691.1_3622002-3621967|NZ_CP054691.1_3682987-3682952|NZ_CP054691.1_2997277-2997312|NZ_CP054691.1_808281-808316|NZ_CP054691.1_957746-957781	NA	1	1	Orphan	WYL,cas3,csa3,DinG,DEDDh,cas4	NA|2073aa|up_8|NZ_CP054691.1_2983633_2989852_-,NA|82aa|down_1|NZ_CP054691.1_3003099_3003345_-,NA|123aa|down_6|NZ_CP054691.1_3006580_3006949_-	NA|188aa|up_9|NZ_CP054691.1_2982905_2983469_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|2073aa|up_8|NZ_CP054691.1_2983633_2989852_-	NA	NA|180aa|up_7|NZ_CP054691.1_2990056_2990596_-	pfam12079, DUF3558, Protein of unknown function (DUF3558)	NA|295aa|up_6|NZ_CP054691.1_2990592_2991477_-	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]	NA|59aa|up_5|NZ_CP054691.1_2991717_2991894_-	COG3422, COG3422, Uncharacterized conserved protein [Function unknown]	NA|511aa|up_4|NZ_CP054691.1_2992078_2993611_-	smart00157, PRP, Major prion protein	NA|627aa|up_3|NZ_CP054691.1_2993891_2995772_-	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|322aa|up_2|NZ_CP054691.1_2996152_2997118_+	COG0627, COG0627, Predicted esterase [General function prediction only]	NA|241aa|up_1|NZ_CP054691.1_2997473_2998196_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|334aa|up_0|NZ_CP054691.1_2998338_2999340_+	pfam00665, rve, Integrase core domain	NA|1055aa|down_0|NZ_CP054691.1_2999480_3002645_-	pfam07971, Glyco_hydro_92, Glycosyl hydrolase family 92	NA|82aa|down_1|NZ_CP054691.1_3003099_3003345_-	NA	NA|75aa|down_2|NZ_CP054691.1_3003667_3003892_-	pfam03621, MbtH, MbtH-like protein	NA|380aa|down_3|NZ_CP054691.1_3003972_3005112_-	cd01162, IBD, Isobutyryl-CoA dehydrogenase	NA|150aa|down_4|NZ_CP054691.1_3005189_3005639_+	PRK09004, PRK09004, FMN-binding protein MioC; Provisional	NA|292aa|down_5|NZ_CP054691.1_3005670_3006546_-	pfam05653, Mg_trans_NIPA, Magnesium transporter NIPA	NA|123aa|down_6|NZ_CP054691.1_3006580_3006949_-	NA	NA|266aa|down_7|NZ_CP054691.1_3007117_3007915_+	PRK08317, PRK08317, hypothetical protein; Provisional	NA|90aa|down_8|NZ_CP054691.1_3007963_3008233_+	TIGR00172, Maf-like_protein_HP_1240, MAF protein	NA|161aa|down_9|NZ_CP054691.1_3008229_3008712_+	COG2062, SixA, Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
GCF_013348785.1_ASM1334878v1	NZ_CP054691	Gordonia sp. X0973 chromosome, complete genome	6	3643623-3643728	6	CRISPRCasFinder	no		WYL,cas3,csa3,DinG,DEDDh,cas4	Orphan	GGTGGTCGAGTGCCGGCGAGGCGCTAG	27	1	2	3643650-3643701|3643650-3643701	NZ_CP054691.1_240316-240265|NZ_CP054691.1_240395-240344	NA	1	1	Orphan	WYL,cas3,csa3,DinG,DEDDh,cas4	NA|233aa|up_9|NZ_CP054691.1_3633488_3634187_-,NA|251aa|up_8|NZ_CP054691.1_3635087_3635840_-,NA|126aa|up_7|NZ_CP054691.1_3636206_3636584_-,NA|108aa|up_6|NZ_CP054691.1_3636794_3637118_+,NA|151aa|down_8|NZ_CP054691.1_3654775_3655228_+	NA|233aa|up_9|NZ_CP054691.1_3633488_3634187_-	NA	NA|251aa|up_8|NZ_CP054691.1_3635087_3635840_-	NA	NA|126aa|up_7|NZ_CP054691.1_3636206_3636584_-	NA	NA|108aa|up_6|NZ_CP054691.1_3636794_3637118_+	NA	NA|382aa|up_5|NZ_CP054691.1_3637201_3638347_-	PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional	NA|497aa|up_4|NZ_CP054691.1_3638585_3640076_-	PRK07121, PRK07121, FAD-binding protein	NA|153aa|up_3|NZ_CP054691.1_3640126_3640585_-	TIGR00026, Hypothetical_protein_Rv1261c/MT1299/Mb1292c	NA|117aa|up_2|NZ_CP054691.1_3640592_3640943_-	pfam02583, Trns_repr_metal, Metal-sensitive transcriptional repressor	NA|234aa|up_1|NZ_CP054691.1_3640992_3641694_-	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|572aa|up_0|NZ_CP054691.1_3641756_3643472_-	PRK07804, PRK07804, L-aspartate oxidase; Provisional	NA|280aa|down_0|NZ_CP054691.1_3644884_3645724_-	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase	NA|445aa|down_1|NZ_CP054691.1_3645828_3647163_+	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]	NA|472aa|down_2|NZ_CP054691.1_3647199_3648615_+	pfam11271, DUF3068, Protein of unknown function (DUF3068)	NA|251aa|down_3|NZ_CP054691.1_3648616_3649369_-	COG2119, COG2119, Predicted membrane protein [Function unknown]	NA|340aa|down_4|NZ_CP054691.1_3649573_3650593_-	COG0627, COG0627, Predicted esterase [General function prediction only]	NA|281aa|down_5|NZ_CP054691.1_3650980_3651823_+	PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydrogenase; Validated	NA|355aa|down_6|NZ_CP054691.1_3651900_3652965_-	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|558aa|down_7|NZ_CP054691.1_3653046_3654720_+	PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed	NA|151aa|down_8|NZ_CP054691.1_3654775_3655228_+	NA	NA|341aa|down_9|NZ_CP054691.1_3655336_3656359_+	pfam04261, Dyp_perox, Dyp-type peroxidase family
