assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013347325.1_ASM1334732v1	NZ_CP054624	Cupriavidus gilardii strain FDAARGOS_639 chromosome 1, complete sequence	1	1421148-1421248	1	CRISPRCasFinder	no		csa3,DEDDh	Orphan	GCGGGAGAGGGAGCAGGTCGTCGCGG	26	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,WYL,cas3	NA|157aa|up_9|NZ_CP054624.1_1412004_1412475_-,NA|561aa|up_8|NZ_CP054624.1_1412516_1414199_-,NA|56aa|up_0|NZ_CP054624.1_1420719_1420887_+,NA|196aa|down_1|NZ_CP054624.1_1422347_1422935_+	NA|157aa|up_9|NZ_CP054624.1_1412004_1412475_-	NA	NA|561aa|up_8|NZ_CP054624.1_1412516_1414199_-	NA	NA|321aa|up_7|NZ_CP054624.1_1414264_1415227_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|233aa|up_6|NZ_CP054624.1_1415471_1416170_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|251aa|up_5|NZ_CP054624.1_1416259_1417012_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|218aa|up_4|NZ_CP054624.1_1417052_1417706_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|268aa|up_3|NZ_CP054624.1_1417773_1418577_-	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily	NA|294aa|up_2|NZ_CP054624.1_1418805_1419687_+	cd00789, KU_like, Ku-core domain, Ku-like subfamily; composed of prokaryotic homologs of the eukaryotic DNA binding protein Ku	NA|288aa|up_1|NZ_CP054624.1_1419683_1420547_+	sd00006, TPR, Tetratricopeptide repeat	NA|56aa|up_0|NZ_CP054624.1_1420719_1420887_+	NA	NA|287aa|down_0|NZ_CP054624.1_1421385_1422246_+	pfam03961, FapA, Flagellar Assembly Protein A	NA|196aa|down_1|NZ_CP054624.1_1422347_1422935_+	NA	NA|401aa|down_2|NZ_CP054624.1_1422989_1424192_-	PRK09257, PRK09257, aromatic amino acid transaminase	NA|462aa|down_3|NZ_CP054624.1_1424332_1425718_-	PRK10238, PRK10238, aromatic amino acid transporter AroP	NA|358aa|down_4|NZ_CP054624.1_1425914_1426988_-	TIGR01263, 4-hydroxyphenylpyruvate_dioxygenase, 4-hydroxyphenylpyruvate dioxygenase	NA|158aa|down_5|NZ_CP054624.1_1427250_1427724_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|233aa|down_6|NZ_CP054624.1_1427894_1428593_+	PRK12828, PRK12828, short chain dehydrogenase; Provisional	NA|317aa|down_7|NZ_CP054624.1_1428627_1429578_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|299aa|down_8|NZ_CP054624.1_1429641_1430538_-	TIGR02317, Methylisocitrate_lyase, methylisocitrate lyase	NA|382aa|down_9|NZ_CP054624.1_1430534_1431680_-	pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family
GCF_013347325.1_ASM1334732v1	NZ_CP054626	Cupriavidus gilardii strain FDAARGOS_639 chromosome 2, complete sequence	1	1180094-1180212	1	CRISPRCasFinder	no		csa3,DinG,DEDDh,WYL,cas3	Orphan	GCCGCCAAGGCCGCCAAGCCGGC	23	0	0	NA	NA	NA	2	2	Orphan	csa3,DEDDh,DinG,WYL,cas3	NA,NA|117aa|down_6|NZ_CP054626.1_1188883_1189234_-,NA|219aa|down_9|NZ_CP054626.1_1191935_1192592_-	NA|139aa|up_9|NZ_CP054626.1_1171603_1172020_-	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General    function prediction only]	NA|59aa|up_8|NZ_CP054626.1_1172059_1172236_-	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,	NA|273aa|up_7|NZ_CP054626.1_1172402_1173221_-	cd01639, IMPase, IMPase, inositol monophosphatase and related domains	NA|303aa|up_6|NZ_CP054626.1_1173417_1174326_+	COG0565, LasT, rRNA methylase [Translation, ribosomal structure and biogenesis]	NA|248aa|up_5|NZ_CP054626.1_1174686_1175430_+	TIGR01172, Serine_acetyltransferase, serine O-acetyltransferase	NA|261aa|up_4|NZ_CP054626.1_1175480_1176263_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|167aa|up_3|NZ_CP054626.1_1176379_1176880_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|206aa|up_2|NZ_CP054626.1_1176892_1177510_-	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]	NA|253aa|up_1|NZ_CP054626.1_1177662_1178421_-	sd00006, TPR, Tetratricopeptide repeat	NA|463aa|up_0|NZ_CP054626.1_1178684_1180073_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|324aa|down_0|NZ_CP054626.1_1181132_1182104_+	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|501aa|down_1|NZ_CP054626.1_1182069_1183572_+	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]	NA|417aa|down_2|NZ_CP054626.1_1183749_1185000_+	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|389aa|down_3|NZ_CP054626.1_1185363_1186530_-	pfam00924, MS_channel, Mechanosensitive ion channel	NA|398aa|down_4|NZ_CP054626.1_1186875_1188069_+	cd00567, ACAD, Acyl-CoA dehydrogenase	NA|279aa|down_5|NZ_CP054626.1_1188079_1188916_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|117aa|down_6|NZ_CP054626.1_1188883_1189234_-	NA	NA|452aa|down_7|NZ_CP054626.1_1189242_1190598_-	pfam07287, AtuA, Acyclic terpene utilisation family protein AtuA	NA|332aa|down_8|NZ_CP054626.1_1190740_1191736_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|219aa|down_9|NZ_CP054626.1_1191935_1192592_-	NA
GCF_013347325.1_ASM1334732v1	NZ_CP054626	Cupriavidus gilardii strain FDAARGOS_639 chromosome 2, complete sequence	2	2105551-2105641	2	CRISPRCasFinder	no		csa3,DinG,DEDDh,WYL,cas3	Orphan	GCGGGAGAGGGAGCACACACCGGGCAGT	28	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,WYL,cas3	NA,NA|119aa|down_7|NZ_CP054626.1_2112733_2113090_-	NA|322aa|up_9|NZ_CP054626.1_2085191_2086157_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|1959aa|up_8|NZ_CP054626.1_2086451_2092328_+	NF033203, entero_EhxA, enterohemolysin EhxA	NA|495aa|up_7|NZ_CP054626.1_2092582_2094067_+	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|782aa|up_6|NZ_CP054626.1_2094059_2096405_+	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family	NA|391aa|up_5|NZ_CP054626.1_2096409_2097582_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|684aa|up_4|NZ_CP054626.1_2097578_2099630_-	TIGR03648, Na_symport_lg, probable sodium:solute symporter, VC_2705 subfamily	NA|661aa|up_3|NZ_CP054626.1_2099722_2101705_-	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|342aa|up_2|NZ_CP054626.1_2102139_2103165_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|183aa|up_1|NZ_CP054626.1_2103175_2103724_+	PRK05208, PRK05208, hypothetical protein; Provisional	NA|508aa|up_0|NZ_CP054626.1_2103941_2105465_+	COG1951, TtdA, Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain [Energy production and conversion]	NA|279aa|down_0|NZ_CP054626.1_2105736_2106573_+	PRK00865, PRK00865, glutamate racemase; Provisional	NA|767aa|down_1|NZ_CP054626.1_2106673_2108974_-	COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]	NA|222aa|down_2|NZ_CP054626.1_2109563_2110229_+	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal	NA|243aa|down_3|NZ_CP054626.1_2110275_2111004_+	COG0811, TolQ, Biopolymer transport proteins [Intracellular trafficking and secretion]	NA|138aa|down_4|NZ_CP054626.1_2111042_2111456_+	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion]	NA|115aa|down_5|NZ_CP054626.1_2111695_2112040_+	pfam10636, hemP, Hemin uptake protein hemP	NA|136aa|down_6|NZ_CP054626.1_2112166_2112574_-	COG3193, GlcG, Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]	NA|119aa|down_7|NZ_CP054626.1_2112733_2113090_-	NA	NA|367aa|down_8|NZ_CP054626.1_2113397_2114498_-	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|310aa|down_9|NZ_CP054626.1_2114600_2115530_+	PRK10837, PRK10837, putative DNA-binding transcriptional regulator; Provisional
GCF_013347325.1_ASM1334732v1	NZ_CP054626	Cupriavidus gilardii strain FDAARGOS_639 chromosome 2, complete sequence	3	2348796-2349078	1	CRT	no		csa3,DinG,DEDDh,WYL,cas3	Orphan	ATCCCCGCCCCAATCCCC	18	0	0	NA	NA	NA	6	6	Orphan	csa3,DEDDh,DinG,WYL,cas3	NA|177aa|up_4|NZ_CP054626.1_2343161_2343692_+,NA|137aa|up_0|NZ_CP054626.1_2348249_2348660_-,NA|599aa|down_1|NZ_CP054626.1_2352798_2354595_-	NA|326aa|up_9|NZ_CP054626.1_2337529_2338507_-	TIGR03885, putative_dehydrogenase_protein, probable non-F420 flavinoid oxidoreductase	NA|133aa|up_8|NZ_CP054626.1_2338547_2338946_-	pfam07100, ASRT, Anabaena sensory rhodopsin transducer	NA|542aa|up_7|NZ_CP054626.1_2338995_2340621_-	cd11334, AmyAc_TreS, Alpha amylase catalytic domain found in Trehalose synthetase	NA|536aa|up_6|NZ_CP054626.1_2340690_2342298_-	cd11331, AmyAc_OligoGlu_like, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase) and related proteins	NA|97aa|up_5|NZ_CP054626.1_2342652_2342943_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|177aa|up_4|NZ_CP054626.1_2343161_2343692_+	NA	NA|755aa|up_3|NZ_CP054626.1_2343791_2346056_-	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|153aa|up_2|NZ_CP054626.1_2346075_2346534_-	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|378aa|up_1|NZ_CP054626.1_2346849_2347983_-	pfam01637, ATPase_2, ATPase domain predominantly from Archaea	NA|137aa|up_0|NZ_CP054626.1_2348249_2348660_-	NA	NA|1147aa|down_0|NZ_CP054626.1_2349329_2352770_+	PRK09776, PRK09776, putative diguanylate cyclase; Provisional	NA|599aa|down_1|NZ_CP054626.1_2352798_2354595_-	NA	NA|171aa|down_2|NZ_CP054626.1_2354924_2355437_+	COG3450, COG3450, Predicted enzyme of the cupin superfamily [General function prediction only]	NA|437aa|down_3|NZ_CP054626.1_2355855_2357166_+	COG1301, GltP, Na+/H+-dicarboxylate symporters [Energy production and conversion]	NA|613aa|down_4|NZ_CP054626.1_2357525_2359364_+	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	NA|443aa|down_5|NZ_CP054626.1_2359344_2360673_+	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|252aa|down_6|NZ_CP054626.1_2361181_2361937_+	cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others	NA|223aa|down_7|NZ_CP054626.1_2362179_2362848_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|423aa|down_8|NZ_CP054626.1_2362895_2364164_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|390aa|down_9|NZ_CP054626.1_2364355_2365525_-	PRK15057, PRK15057, UDP-glucose 6-dehydrogenase; Provisional
GCF_013347325.1_ASM1334732v1	NZ_CP054626	Cupriavidus gilardii strain FDAARGOS_639 chromosome 2, complete sequence	4	2430020-2430123	3	CRISPRCasFinder	no		csa3,DinG,DEDDh,WYL,cas3	Orphan	CGCCAGCCGTCCCCGATTGTGTTCTCCCTC	30	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,WYL,cas3	NA|576aa|up_2|NZ_CP054626.1_2425001_2426729_-,NA	NA|462aa|up_9|NZ_CP054626.1_2418176_2419562_-	PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed	NA|207aa|up_8|NZ_CP054626.1_2420525_2421146_+	COG0811, TolQ, Biopolymer transport proteins [Intracellular trafficking and secretion]	NA|143aa|up_7|NZ_CP054626.1_2421161_2421590_+	pfam02472, ExbD, Biopolymer transport protein ExbD/TolR	NA|372aa|up_6|NZ_CP054626.1_2421810_2422926_+	PRK01906, PRK01906, tetraacyldisaccharide 4'-kinase; Provisional	NA|63aa|up_5|NZ_CP054626.1_2422906_2423095_+	COG2835, COG2835, Uncharacterized conserved protein [Function unknown]	NA|270aa|up_4|NZ_CP054626.1_2423106_2423916_+	PRK05450, PRK05450, 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional	NA|222aa|up_3|NZ_CP054626.1_2424260_2424926_+	PRK00279, adk, adenylate kinase; Reviewed	NA|576aa|up_2|NZ_CP054626.1_2425001_2426729_-	NA	NA|253aa|up_1|NZ_CP054626.1_2427079_2427838_+	cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydrogenase type 10 (HSD10)-like, classical (c) SDRs	NA|642aa|up_0|NZ_CP054626.1_2427994_2429920_+	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism]	NA|298aa|down_0|NZ_CP054626.1_2430170_2431064_-	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|340aa|down_1|NZ_CP054626.1_2431227_2432247_+	pfam13593, SBF_like, SBF-like CPA transporter family (DUF4137)	NA|507aa|down_2|NZ_CP054626.1_2432419_2433940_-	PRK10319, PRK10319, N-acetylmuramoyl-L-alanine amidase AmiA	NA|171aa|down_3|NZ_CP054626.1_2433933_2434446_-	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only]	NA|403aa|down_4|NZ_CP054626.1_2434462_2435671_+	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|298aa|down_5|NZ_CP054626.1_2435741_2436635_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|214aa|down_6|NZ_CP054626.1_2436872_2437514_+	pfam16036, Chalcone_3, Chalcone isomerase-like	NA|324aa|down_7|NZ_CP054626.1_2437626_2438598_+	cd13577, PBP2_BugE_Glu, Glutamate transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold	NA|153aa|down_8|NZ_CP054626.1_2438853_2439312_+	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|299aa|down_9|NZ_CP054626.1_2439404_2440301_+	PRK00283, xerD, tyrosine recombinase
