assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013347285.1_ASM1334728v1	NZ_CP054619	Azospirillum oryzae strain KACC 14407 chromosome, complete genome	1	1273713-1274603	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas5,cas8c,cas7b	DEDDh,WYL,csa3,cas3,cas5,cas8c,cas7b	Type I-C, Type I-U?,Type I-U	TTGCCCCCACCCGGGGGCGTGGATTGAAAC,TTGCCCCCACCCGGGGGCGTGGATTGAAACA,NCCCCNCNCGGGGGCGTGGATTGAAAN	30,31,27	0	0	NA	NA	I-C:I-C:I-C	4,10,13	13	TypeI-C,TypeI-U?,TypeI-U	DEDDh,WYL,csa3,cas3,cas5,cas8c,cas7b,c2c9_V-U4,DinG,RT	NA|99aa|up_8|NZ_CP054619.1_1263747_1264044_+,NA|112aa|up_7|NZ_CP054619.1_1264087_1264423_-,NA|96aa|up_5|NZ_CP054619.1_1265997_1266285_-,NA|86aa|down_0|NZ_CP054619.1_1277724_1277982_-,NA|63aa|down_2|NZ_CP054619.1_1279067_1279256_-,NA|310aa|down_4|NZ_CP054619.1_1279729_1280659_-,NA|150aa|down_5|NZ_CP054619.1_1281381_1281831_+,NA|141aa|down_6|NZ_CP054619.1_1282008_1282431_-	NA|541aa|up_9|NZ_CP054619.1_1261446_1263069_+	pfam05272, VirE, Virulence-associated protein E	NA|99aa|up_8|NZ_CP054619.1_1263747_1264044_+	NA	NA|112aa|up_7|NZ_CP054619.1_1264087_1264423_-	NA	NA|233aa|up_6|NZ_CP054619.1_1264820_1265519_+	COG2944, COG2944, Predicted transcriptional regulator [Transcription]	NA|96aa|up_5|NZ_CP054619.1_1265997_1266285_-	NA	NA|128aa|up_4|NZ_CP054619.1_1266309_1266693_-	cd10440, GIY-YIG_COG3680, GIY-YIG domain of uncharacterized proteins from bacteria and their eukaryotic homologs	cas3|776aa|up_3|NZ_CP054619.1_1267308_1269636_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	cas5|238aa|up_2|NZ_CP054619.1_1269700_1270414_+	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|638aa|up_1|NZ_CP054619.1_1270403_1272317_+	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas7b|389aa|up_0|NZ_CP054619.1_1272352_1273519_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	NA|86aa|down_0|NZ_CP054619.1_1277724_1277982_-	NA	NA|235aa|down_1|NZ_CP054619.1_1278049_1278754_-	smart00857, Resolvase, Resolvase, N terminal domain	NA|63aa|down_2|NZ_CP054619.1_1279067_1279256_-	NA	NA|132aa|down_3|NZ_CP054619.1_1279286_1279682_-	PRK05590, PRK05590, hypothetical protein; Provisional	NA|310aa|down_4|NZ_CP054619.1_1279729_1280659_-	NA	NA|150aa|down_5|NZ_CP054619.1_1281381_1281831_+	NA	NA|141aa|down_6|NZ_CP054619.1_1282008_1282431_-	NA	NA|613aa|down_7|NZ_CP054619.1_1282518_1284357_-	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain	NA|130aa|down_8|NZ_CP054619.1_1284355_1284745_+	PRK09256, PRK09256, aminoacyl-tRNA hydrolase	NA|412aa|down_9|NZ_CP054619.1_1284878_1286114_+	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters
GCF_013347285.1_ASM1334728v1	NZ_CP054619	Azospirillum oryzae strain KACC 14407 chromosome, complete genome	2	1275914-1276460	2,2	CRT,PILER-CR	no	cas3,cas5,cas8c,cas7b	DEDDh,WYL,csa3,cas3,cas5,cas8c,cas7b	Type I-C, Type I-U?,Type I-U	NGGGGCGTGGATTGAAAC,GAGTTCGCCTCCACGCGGGGGCGTGGATTGAAACG	18,35	0	0	NA	NA	NA:I-C	8,2	8	TypeI-C,TypeI-U?,TypeI-U	DEDDh,WYL,csa3,cas3,cas5,cas8c,cas7b,c2c9_V-U4,DinG,RT	NA|99aa|up_8|NZ_CP054619.1_1263747_1264044_+,NA|112aa|up_7|NZ_CP054619.1_1264087_1264423_-,NA|96aa|up_5|NZ_CP054619.1_1265997_1266285_-,NA|86aa|down_0|NZ_CP054619.1_1277724_1277982_-,NA|63aa|down_2|NZ_CP054619.1_1279067_1279256_-,NA|310aa|down_4|NZ_CP054619.1_1279729_1280659_-,NA|150aa|down_5|NZ_CP054619.1_1281381_1281831_+,NA|141aa|down_6|NZ_CP054619.1_1282008_1282431_-	NA|541aa|up_9|NZ_CP054619.1_1261446_1263069_+	pfam05272, VirE, Virulence-associated protein E	NA|99aa|up_8|NZ_CP054619.1_1263747_1264044_+	NA	NA|112aa|up_7|NZ_CP054619.1_1264087_1264423_-	NA	NA|233aa|up_6|NZ_CP054619.1_1264820_1265519_+	COG2944, COG2944, Predicted transcriptional regulator [Transcription]	NA|96aa|up_5|NZ_CP054619.1_1265997_1266285_-	NA	NA|128aa|up_4|NZ_CP054619.1_1266309_1266693_-	cd10440, GIY-YIG_COG3680, GIY-YIG domain of uncharacterized proteins from bacteria and their eukaryotic homologs	cas3|776aa|up_3|NZ_CP054619.1_1267308_1269636_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	cas5|238aa|up_2|NZ_CP054619.1_1269700_1270414_+	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|638aa|up_1|NZ_CP054619.1_1270403_1272317_+	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas7b|389aa|up_0|NZ_CP054619.1_1272352_1273519_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	NA|86aa|down_0|NZ_CP054619.1_1277724_1277982_-	NA	NA|235aa|down_1|NZ_CP054619.1_1278049_1278754_-	smart00857, Resolvase, Resolvase, N terminal domain	NA|63aa|down_2|NZ_CP054619.1_1279067_1279256_-	NA	NA|132aa|down_3|NZ_CP054619.1_1279286_1279682_-	PRK05590, PRK05590, hypothetical protein; Provisional	NA|310aa|down_4|NZ_CP054619.1_1279729_1280659_-	NA	NA|150aa|down_5|NZ_CP054619.1_1281381_1281831_+	NA	NA|141aa|down_6|NZ_CP054619.1_1282008_1282431_-	NA	NA|613aa|down_7|NZ_CP054619.1_1282518_1284357_-	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain	NA|130aa|down_8|NZ_CP054619.1_1284355_1284745_+	PRK09256, PRK09256, aminoacyl-tRNA hydrolase	NA|412aa|down_9|NZ_CP054619.1_1284878_1286114_+	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters
GCF_013347285.1_ASM1334728v1	NZ_CP054619	Azospirillum oryzae strain KACC 14407 chromosome, complete genome	3	1276511-1276724	3	PILER-CR	no	cas3,cas5,cas8c,cas7b	DEDDh,WYL,csa3,cas3,cas5,cas8c,cas7b	Type I-C, Type I-U?,Type I-U	GGGGCGTGGATTGAAAC	17	0	0	NA	NA	NA	3	3	TypeI-C,TypeI-U?,TypeI-U	DEDDh,WYL,csa3,cas3,cas5,cas8c,cas7b,c2c9_V-U4,DinG,RT	NA|99aa|up_8|NZ_CP054619.1_1263747_1264044_+,NA|112aa|up_7|NZ_CP054619.1_1264087_1264423_-,NA|96aa|up_5|NZ_CP054619.1_1265997_1266285_-,NA|86aa|down_0|NZ_CP054619.1_1277724_1277982_-,NA|63aa|down_2|NZ_CP054619.1_1279067_1279256_-,NA|310aa|down_4|NZ_CP054619.1_1279729_1280659_-,NA|150aa|down_5|NZ_CP054619.1_1281381_1281831_+,NA|141aa|down_6|NZ_CP054619.1_1282008_1282431_-	NA|541aa|up_9|NZ_CP054619.1_1261446_1263069_+	pfam05272, VirE, Virulence-associated protein E	NA|99aa|up_8|NZ_CP054619.1_1263747_1264044_+	NA	NA|112aa|up_7|NZ_CP054619.1_1264087_1264423_-	NA	NA|233aa|up_6|NZ_CP054619.1_1264820_1265519_+	COG2944, COG2944, Predicted transcriptional regulator [Transcription]	NA|96aa|up_5|NZ_CP054619.1_1265997_1266285_-	NA	NA|128aa|up_4|NZ_CP054619.1_1266309_1266693_-	cd10440, GIY-YIG_COG3680, GIY-YIG domain of uncharacterized proteins from bacteria and their eukaryotic homologs	cas3|776aa|up_3|NZ_CP054619.1_1267308_1269636_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	cas5|238aa|up_2|NZ_CP054619.1_1269700_1270414_+	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|638aa|up_1|NZ_CP054619.1_1270403_1272317_+	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas7b|389aa|up_0|NZ_CP054619.1_1272352_1273519_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	NA|86aa|down_0|NZ_CP054619.1_1277724_1277982_-	NA	NA|235aa|down_1|NZ_CP054619.1_1278049_1278754_-	smart00857, Resolvase, Resolvase, N terminal domain	NA|63aa|down_2|NZ_CP054619.1_1279067_1279256_-	NA	NA|132aa|down_3|NZ_CP054619.1_1279286_1279682_-	PRK05590, PRK05590, hypothetical protein; Provisional	NA|310aa|down_4|NZ_CP054619.1_1279729_1280659_-	NA	NA|150aa|down_5|NZ_CP054619.1_1281381_1281831_+	NA	NA|141aa|down_6|NZ_CP054619.1_1282008_1282431_-	NA	NA|613aa|down_7|NZ_CP054619.1_1282518_1284357_-	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain	NA|130aa|down_8|NZ_CP054619.1_1284355_1284745_+	PRK09256, PRK09256, aminoacyl-tRNA hydrolase	NA|412aa|down_9|NZ_CP054619.1_1284878_1286114_+	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters
GCF_013347285.1_ASM1334728v1	NZ_CP054619	Azospirillum oryzae strain KACC 14407 chromosome, complete genome	4	1277222-1277573	3	CRT	no	cas3,cas5,cas8c,cas7b	DEDDh,WYL,csa3,cas3,cas5,cas8c,cas7b	Type I-C, Type I-U?,Type I-U	GTTCGCCCCCACGCGGGGG	19	0	0	NA	NA	NA	5	5	TypeI-C,TypeI-U?,TypeI-U	DEDDh,WYL,csa3,cas3,cas5,cas8c,cas7b,c2c9_V-U4,DinG,RT	NA|99aa|up_8|NZ_CP054619.1_1263747_1264044_+,NA|112aa|up_7|NZ_CP054619.1_1264087_1264423_-,NA|96aa|up_5|NZ_CP054619.1_1265997_1266285_-,NA|86aa|down_0|NZ_CP054619.1_1277724_1277982_-,NA|63aa|down_2|NZ_CP054619.1_1279067_1279256_-,NA|310aa|down_4|NZ_CP054619.1_1279729_1280659_-,NA|150aa|down_5|NZ_CP054619.1_1281381_1281831_+,NA|141aa|down_6|NZ_CP054619.1_1282008_1282431_-	NA|541aa|up_9|NZ_CP054619.1_1261446_1263069_+	pfam05272, VirE, Virulence-associated protein E	NA|99aa|up_8|NZ_CP054619.1_1263747_1264044_+	NA	NA|112aa|up_7|NZ_CP054619.1_1264087_1264423_-	NA	NA|233aa|up_6|NZ_CP054619.1_1264820_1265519_+	COG2944, COG2944, Predicted transcriptional regulator [Transcription]	NA|96aa|up_5|NZ_CP054619.1_1265997_1266285_-	NA	NA|128aa|up_4|NZ_CP054619.1_1266309_1266693_-	cd10440, GIY-YIG_COG3680, GIY-YIG domain of uncharacterized proteins from bacteria and their eukaryotic homologs	cas3|776aa|up_3|NZ_CP054619.1_1267308_1269636_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	cas5|238aa|up_2|NZ_CP054619.1_1269700_1270414_+	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|638aa|up_1|NZ_CP054619.1_1270403_1272317_+	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas7b|389aa|up_0|NZ_CP054619.1_1272352_1273519_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	NA|86aa|down_0|NZ_CP054619.1_1277724_1277982_-	NA	NA|235aa|down_1|NZ_CP054619.1_1278049_1278754_-	smart00857, Resolvase, Resolvase, N terminal domain	NA|63aa|down_2|NZ_CP054619.1_1279067_1279256_-	NA	NA|132aa|down_3|NZ_CP054619.1_1279286_1279682_-	PRK05590, PRK05590, hypothetical protein; Provisional	NA|310aa|down_4|NZ_CP054619.1_1279729_1280659_-	NA	NA|150aa|down_5|NZ_CP054619.1_1281381_1281831_+	NA	NA|141aa|down_6|NZ_CP054619.1_1282008_1282431_-	NA	NA|613aa|down_7|NZ_CP054619.1_1282518_1284357_-	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain	NA|130aa|down_8|NZ_CP054619.1_1284355_1284745_+	PRK09256, PRK09256, aminoacyl-tRNA hydrolase	NA|412aa|down_9|NZ_CP054619.1_1284878_1286114_+	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters
GCF_013347285.1_ASM1334728v1	NZ_CP054619	Azospirillum oryzae strain KACC 14407 chromosome, complete genome	5	2269490-2269587	2	CRISPRCasFinder	no		DEDDh,WYL,csa3,cas3,cas5,cas8c,cas7b	Orphan	GCGGCGGAAGCCGGGCGCAAGGG	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,csa3,cas3,cas5,cas8c,cas7b,c2c9_V-U4,DinG,RT	NA|236aa|up_9|NZ_CP054619.1_2253905_2254613_-,NA|335aa|up_5|NZ_CP054619.1_2258778_2259783_-,NA|555aa|down_2|NZ_CP054619.1_2271847_2273512_+,NA|68aa|down_5|NZ_CP054619.1_2275121_2275325_-,NA|201aa|down_6|NZ_CP054619.1_2275340_2275943_-	NA|236aa|up_9|NZ_CP054619.1_2253905_2254613_-	NA	NA|344aa|up_8|NZ_CP054619.1_2254727_2255759_-	COG4127, COG4127, Uncharacterized conserved protein [Function unknown]	NA|486aa|up_7|NZ_CP054619.1_2255834_2257292_-	cd17246, RMtype1_S_SonII-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Shewanella oneidensis MR-1 S subunit (S	NA|484aa|up_6|NZ_CP054619.1_2257330_2258782_-	pfam02384, N6_Mtase, N-6 DNA Methylase	NA|335aa|up_5|NZ_CP054619.1_2258778_2259783_-	NA	NA|1182aa|up_4|NZ_CP054619.1_2259797_2263343_-	PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional	NA|391aa|up_3|NZ_CP054619.1_2263537_2264710_-	COG1485, COG1485, Predicted ATPase [General function prediction only]	NA|736aa|up_2|NZ_CP054619.1_2264989_2267197_+	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS	NA|287aa|up_1|NZ_CP054619.1_2267253_2268114_-	PRK05756, PRK05756, pyridoxal kinase PdxY	NA|294aa|up_0|NZ_CP054619.1_2268317_2269199_+	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism]	NA|372aa|down_0|NZ_CP054619.1_2269747_2270863_-	PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional	NA|204aa|down_1|NZ_CP054619.1_2270934_2271546_-	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit	NA|555aa|down_2|NZ_CP054619.1_2271847_2273512_+	NA	NA|325aa|down_3|NZ_CP054619.1_2273666_2274641_+	TIGR04182, glyco_TIGR04182, glycosyltransferase, TIGR04182 family	NA|143aa|down_4|NZ_CP054619.1_2274640_2275069_+	pfam04138, GtrA, GtrA-like protein	NA|68aa|down_5|NZ_CP054619.1_2275121_2275325_-	NA	NA|201aa|down_6|NZ_CP054619.1_2275340_2275943_-	NA	NA|284aa|down_7|NZ_CP054619.1_2276060_2276912_+	PRK00450, dapF, diaminopimelate epimerase; Provisional	NA|424aa|down_8|NZ_CP054619.1_2276908_2278180_+	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|439aa|down_9|NZ_CP054619.1_2278202_2279519_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional
GCF_013347285.1_ASM1334728v1	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	1	97027-97206	1	PILER-CR	no		c2c9_V-U4	Orphan	ATCGGCGGCACGGGCACCGACGTCGTCACCATCGGC	36	1	1	97063-97104	NZ_CP054615.1_97990-98031	NA	2	2	Orphan	DEDDh,WYL,csa3,cas3,cas5,cas8c,cas7b,c2c9_V-U4,DinG,RT	NA|355aa|up_6|NZ_CP054615.1_82339_83404_+,NA|143aa|down_0|NZ_CP054615.1_102240_102669_-	NA|457aa|up_9|NZ_CP054615.1_78912_80283_+	PRK15407, PRK15407, lipopolysaccharide biosynthesis protein RfbH; Provisional	NA|323aa|up_8|NZ_CP054615.1_80296_81265_+	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|341aa|up_7|NZ_CP054615.1_81252_82275_+	cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, extended (e) SDRs	NA|355aa|up_6|NZ_CP054615.1_82339_83404_+	NA	NA|616aa|up_5|NZ_CP054615.1_83433_85281_+	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|301aa|up_4|NZ_CP054615.1_85327_86230_+	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|294aa|up_3|NZ_CP054615.1_86243_87125_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|323aa|up_2|NZ_CP054615.1_87121_88090_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|997aa|up_1|NZ_CP054615.1_88206_91197_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|718aa|up_0|NZ_CP054615.1_91241_93395_-	COG0457, NrfG, FOG: TPR repeat [General function prediction only]	NA|143aa|down_0|NZ_CP054615.1_102240_102669_-	NA	NA|332aa|down_1|NZ_CP054615.1_102709_103705_-	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]	NA|352aa|down_2|NZ_CP054615.1_103750_104806_-	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]	NA|650aa|down_3|NZ_CP054615.1_105132_107082_+	sd00006, TPR, Tetratricopeptide repeat	NA|253aa|down_4|NZ_CP054615.1_107136_107895_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|307aa|down_5|NZ_CP054615.1_107887_108808_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|540aa|down_6|NZ_CP054615.1_108834_110454_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|609aa|down_7|NZ_CP054615.1_110666_112493_+	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|229aa|down_8|NZ_CP054615.1_112587_113274_-	cd08369, FMT_core, Formyltransferase, catalytic core domain	NA|399aa|down_9|NZ_CP054615.1_113299_114496_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase
GCF_013347285.1_ASM1334728v1	NZ_CP054620	Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence	1	39405-39493	1	CRISPRCasFinder	no		DEDDh	Orphan	TCGGGATCGTTCTTGAAGTTGCC	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,csa3,cas3,cas5,cas8c,cas7b,c2c9_V-U4,DinG,RT	NA,NA|67aa|down_9|NZ_CP054620.1_52362_52563_+	NA|1166aa|up_9|NZ_CP054620.1_24273_27771_+	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS	NA|218aa|up_8|NZ_CP054620.1_27807_28461_-	COG0800, Eda, 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]	NA|309aa|up_7|NZ_CP054620.1_28460_29387_-	PRK11302, PRK11302, DNA-binding transcriptional regulator HexR; Provisional	NA|719aa|up_6|NZ_CP054620.1_29565_31722_-	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|392aa|up_5|NZ_CP054620.1_32230_33406_-	PRK13289, PRK13289, NO-inducible flavohemoprotein	NA|531aa|up_4|NZ_CP054620.1_33539_35132_+	PRK05022, PRK05022, nitric oxide reductase transcriptional regulator NorR	NA|89aa|up_3|NZ_CP054620.1_35128_35395_+	pfam07369, DUF1488, Protein of unknown function (DUF1488)	NA|428aa|up_2|NZ_CP054620.1_35391_36675_-	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]	NA|180aa|up_1|NZ_CP054620.1_36671_37211_-	pfam04290, DctQ, Tripartite ATP-independent periplasmic transporters, DctQ component	NA|616aa|up_0|NZ_CP054620.1_37290_39138_-	pfam16927, HisKA_7TM, N-terminal 7TM region of histidine kinase	NA|492aa|down_0|NZ_CP054620.1_39756_41232_+	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|399aa|down_1|NZ_CP054620.1_41248_42445_-	PRK03906, PRK03906, mannonate dehydratase; Provisional	NA|426aa|down_2|NZ_CP054620.1_42490_43768_-	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]	NA|168aa|down_3|NZ_CP054620.1_43764_44268_-	COG3090, DctM, TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism]	NA|342aa|down_4|NZ_CP054620.1_44346_45372_-	cd13603, PBP2_TRAP_Siap_TeaA_like, Substrate-binding domain of a sialic acid binding Tripartite ATP-independent  Periplasmic transport system (SiaP) and related proteins; the type 2 periplasmic-binding protein fold	NA|343aa|down_5|NZ_CP054620.1_45443_46472_-	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family	NA|505aa|down_6|NZ_CP054620.1_46511_48026_-	COG0246, MtlD, Mannitol-1-phosphate/altronate dehydrogenases [Carbohydrate transport and metabolism]	NA|253aa|down_7|NZ_CP054620.1_48209_48968_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|924aa|down_8|NZ_CP054620.1_49308_52080_+	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed	NA|67aa|down_9|NZ_CP054620.1_52362_52563_+	NA
GCF_013347285.1_ASM1334728v1	NZ_CP054620	Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence	2	248665-248862	1,1	CRT,PILER-CR	no		DEDDh	Orphan	NTGAACTTTGGTGACGCC,GGCGTCACCAAAGTTCA	18,17	0	0	NA	NA	NA:NA	4,3	4	Orphan	DEDDh,WYL,csa3,cas3,cas5,cas8c,cas7b,c2c9_V-U4,DinG,RT	NA,NA	NA|266aa|up_9|NZ_CP054620.1_234857_235655_-	cd10917, CE4_NodB_like_6s_7s, Catalytic NodB homology domain of rhizobial NodB-like proteins	NA|507aa|up_8|NZ_CP054620.1_235789_237310_-	PRK07514, PRK07514, malonyl-CoA synthase; Validated	NA|1001aa|up_7|NZ_CP054620.1_237650_240653_+	cd14731, LodA_like_1, Uncharacterized proteins similar to L-lysine epsilon-oxidase from Marinomonas mediterranea	NA|379aa|up_6|NZ_CP054620.1_240649_241786_+	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]	NA|392aa|up_5|NZ_CP054620.1_241876_243052_+	pfam13683, rve_3, Integrase core domain	NA|300aa|up_4|NZ_CP054620.1_243129_244029_-	cd08474, PBP2_CrgA_like_5, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|478aa|up_3|NZ_CP054620.1_244132_245566_+	cd07138, ALDH_CddD_SSP0762, Rhodococcus ruber 6-oxolauric acid dehydrogenase-like	NA|308aa|up_2|NZ_CP054620.1_245562_246486_-	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|342aa|up_1|NZ_CP054620.1_246475_247501_-	pfam13614, AAA_31, AAA domain	NA|337aa|up_0|NZ_CP054620.1_247576_248587_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|310aa|down_0|NZ_CP054620.1_249435_250365_+	pfam04796, RepA_C, Plasmid encoded RepA protein	NA|283aa|down_1|NZ_CP054620.1_250454_251303_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|336aa|down_2|NZ_CP054620.1_251417_252425_+	cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|397aa|down_3|NZ_CP054620.1_252778_253969_-	COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms]	NA|152aa|down_4|NZ_CP054620.1_254132_254588_+	cd01110, HTH_SoxR, Helix-Turn-Helix DNA binding domain of the SoxR transcription regulator	NA|388aa|down_5|NZ_CP054620.1_254726_255890_+	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]	NA|246aa|down_6|NZ_CP054620.1_255937_256675_-	COG3971, COG3971, 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|351aa|down_7|NZ_CP054620.1_256671_257724_-	cd06289, PBP1_MalI-like, ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria	NA|313aa|down_8|NZ_CP054620.1_257823_258762_-	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase	NA|248aa|down_9|NZ_CP054620.1_258792_259536_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
GCF_013347285.1_ASM1334728v1	NZ_CP054622	Azospirillum oryzae strain KACC 14407 plasmid unnamed7, complete sequence	1	66496-66575	1	CRISPRCasFinder	no		RT	Orphan	CCATTTACCCGACGTCGGGTAAA	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,csa3,cas3,cas5,cas8c,cas7b,c2c9_V-U4,DinG,RT	NA|75aa|up_3|NZ_CP054622.1_62672_62897_+,NA|283aa|up_2|NZ_CP054622.1_62902_63751_+,NA|170aa|down_4|NZ_CP054622.1_70992_71502_-,NA|92aa|down_6|NZ_CP054622.1_72358_72634_-,NA|157aa|down_7|NZ_CP054622.1_72792_73263_-,NA|60aa|down_9|NZ_CP054622.1_74762_74942_-	NA|217aa|up_9|NZ_CP054622.1_57384_58035_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|192aa|up_8|NZ_CP054622.1_58441_59017_+	pfam05280, FlhC, Flagellar transcriptional activator (FlhC)	NA|86aa|up_7|NZ_CP054622.1_59071_59329_+	pfam13467, RHH_4, Ribbon-helix-helix domain	NA|548aa|up_6|NZ_CP054622.1_59548_61192_-	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|116aa|up_5|NZ_CP054622.1_61271_61619_-	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|137aa|up_4|NZ_CP054622.1_61615_62026_-	pfam01527, HTH_Tnp_1, Transposase	NA|75aa|up_3|NZ_CP054622.1_62672_62897_+	NA	NA|283aa|up_2|NZ_CP054622.1_62902_63751_+	NA	NA|361aa|up_1|NZ_CP054622.1_64488_65571_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|295aa|up_0|NZ_CP054622.1_65563_66448_+	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|433aa|down_0|NZ_CP054622.1_66774_68073_+	COG0433, COG0433,  HerA helicase [Replication, recombination, and repair]	NA|65aa|down_1|NZ_CP054622.1_68297_68492_+	pfam07799, DUF1643, Protein of unknown function (DUF1643)	NA|82aa|down_2|NZ_CP054622.1_69375_69621_-	pfam13763, DUF4167, Domain of unknown function (DUF4167)	NA|158aa|down_3|NZ_CP054622.1_70317_70791_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|170aa|down_4|NZ_CP054622.1_70992_71502_-	NA	NA|214aa|down_5|NZ_CP054622.1_71675_72317_-	pfam07510, DUF1524, Protein of unknown function (DUF1524)	NA|92aa|down_6|NZ_CP054622.1_72358_72634_-	NA	NA|157aa|down_7|NZ_CP054622.1_72792_73263_-	NA	NA|468aa|down_8|NZ_CP054622.1_73331_74735_-	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|60aa|down_9|NZ_CP054622.1_74762_74942_-	NA
GCF_013347285.1_ASM1334728v1	NZ_CP054622	Azospirillum oryzae strain KACC 14407 plasmid unnamed7, complete sequence	2	136640-136765	2	CRISPRCasFinder	no		RT	Orphan	CGACCAATCCGGTGACGGAGAGGGCGACGATGGTGGCGATAGCTC	45	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,csa3,cas3,cas5,cas8c,cas7b,c2c9_V-U4,DinG,RT	NA|75aa|up_9|NZ_CP054622.1_128079_128304_+,NA|48aa|up_7|NZ_CP054622.1_129014_129158_+,NA|88aa|up_6|NZ_CP054622.1_129252_129516_+,NA|73aa|up_4|NZ_CP054622.1_130876_131095_+,NA|266aa|up_1|NZ_CP054622.1_133223_134021_+,NA|232aa|down_0|NZ_CP054622.1_137887_138583_+,NA|103aa|down_1|NZ_CP054622.1_138683_138992_+,NA|132aa|down_2|NZ_CP054622.1_140199_140595_+,NA|101aa|down_3|NZ_CP054622.1_140969_141272_+,NA|89aa|down_6|NZ_CP054622.1_144235_144502_+,NA|177aa|down_7|NZ_CP054622.1_144560_145091_-,NA|190aa|down_9|NZ_CP054622.1_146195_146765_+	NA|75aa|up_9|NZ_CP054622.1_128079_128304_+	NA	NA|182aa|up_8|NZ_CP054622.1_128389_128935_+	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)	NA|48aa|up_7|NZ_CP054622.1_129014_129158_+	NA	NA|88aa|up_6|NZ_CP054622.1_129252_129516_+	NA	NA|385aa|up_5|NZ_CP054622.1_129627_130782_+	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet	NA|73aa|up_4|NZ_CP054622.1_130876_131095_+	NA	NA|336aa|up_3|NZ_CP054622.1_131175_132183_+	TIGR03033, hypothetical_protein, putative phage-type endonuclease	NA|317aa|up_2|NZ_CP054622.1_132273_133224_+	TIGR01650, PD_CobS, cobaltochelatase, CobS subunit	NA|266aa|up_1|NZ_CP054622.1_133223_134021_+	NA	NA|481aa|up_0|NZ_CP054622.1_134134_135577_+	pfam11348, DUF3150, Protein of unknown function (DUF3150)	NA|232aa|down_0|NZ_CP054622.1_137887_138583_+	NA	NA|103aa|down_1|NZ_CP054622.1_138683_138992_+	NA	NA|132aa|down_2|NZ_CP054622.1_140199_140595_+	NA	NA|101aa|down_3|NZ_CP054622.1_140969_141272_+	NA	NA|453aa|down_4|NZ_CP054622.1_141349_142708_+	pfam13362, Toprim_3, Toprim domain	NA|313aa|down_5|NZ_CP054622.1_143035_143974_-	cd07335, M48B_HtpX_like, Peptidase M48 subfamily B HtpX-like membrane-bound metallopeptidase	NA|89aa|down_6|NZ_CP054622.1_144235_144502_+	NA	NA|177aa|down_7|NZ_CP054622.1_144560_145091_-	NA	NA|314aa|down_8|NZ_CP054622.1_145096_146038_-	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti	NA|190aa|down_9|NZ_CP054622.1_146195_146765_+	NA
GCF_013347285.1_ASM1334728v1	NZ_CP054622	Azospirillum oryzae strain KACC 14407 plasmid unnamed7, complete sequence	3	167731-167972	3	CRISPRCasFinder	no		RT	Orphan	ATCTGCGCAGCCCCCCCGGTCTGCGCAAATCATGATCTGCGCAGACC	47	0	0	NA	NA	NA	2	2	Orphan	DEDDh,WYL,csa3,cas3,cas5,cas8c,cas7b,c2c9_V-U4,DinG,RT	NA,NA|170aa|down_0|NZ_CP054622.1_168072_168582_+,NA|99aa|down_1|NZ_CP054622.1_168689_168986_+,NA|157aa|down_2|NZ_CP054622.1_169024_169495_+,NA|183aa|down_3|NZ_CP054622.1_170158_170707_+,NA|243aa|down_5|NZ_CP054622.1_172085_172814_+,NA|88aa|down_6|NZ_CP054622.1_172893_173157_+	NA|231aa|up_9|NZ_CP054622.1_157827_158520_+	cd13400, LT_IagB-like, Escherichia coli invasion protein IagB and similar proteins	NA|96aa|up_8|NZ_CP054622.1_158523_158811_+	pfam05247, FlhD, Flagellar transcriptional activator (FlhD)	NA|215aa|up_7|NZ_CP054622.1_158823_159468_+	pfam05280, FlhC, Flagellar transcriptional activator (FlhC)	NA|314aa|up_6|NZ_CP054622.1_159944_160886_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|348aa|up_5|NZ_CP054622.1_160918_161962_+	cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|175aa|up_4|NZ_CP054622.1_162327_162852_+	cd00569, HTH_Hin_like, Helix-turn-helix domain of Hin and related proteins	NA|315aa|up_3|NZ_CP054622.1_163001_163946_-	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|333aa|up_2|NZ_CP054622.1_164129_165128_+	pfam00665, rve, Integrase core domain	NA|244aa|up_1|NZ_CP054622.1_165114_165846_+	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|332aa|up_0|NZ_CP054622.1_166422_167418_-	cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins	NA|170aa|down_0|NZ_CP054622.1_168072_168582_+	NA	NA|99aa|down_1|NZ_CP054622.1_168689_168986_+	NA	NA|157aa|down_2|NZ_CP054622.1_169024_169495_+	NA	NA|183aa|down_3|NZ_CP054622.1_170158_170707_+	NA	NA|258aa|down_4|NZ_CP054622.1_170879_171653_+	pfam13455, MUG113, Meiotically up-regulated gene 113	NA|243aa|down_5|NZ_CP054622.1_172085_172814_+	NA	NA|88aa|down_6|NZ_CP054622.1_172893_173157_+	NA	NA|226aa|down_7|NZ_CP054622.1_173518_174196_+	COG4245, TerY, Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]	NA|265aa|down_8|NZ_CP054622.1_174201_174996_+	pfam13672, PP2C_2, Protein phosphatase 2C	NA|633aa|down_9|NZ_CP054622.1_174995_176894_+	COG4248, COG4248, Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]
