assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013344605.1_ASM1334460v1	NZ_CP046108	Enterococcus faecalis strain 133170041-3 chromosome, complete genome	1	1030698-1030811	1	CRISPRCasFinder	no	csa3	WYL,csa3,cas3,DEDDh,DinG,cas14j,csn2,cas2,cas1,cas9	Type I-A	GAACAGTACAAGGTGACCAAAGGGAACGTTGT	32	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,DinG,cas14j,csn2,cas2,cas1,cas9	NA,NA	NA|286aa|up_9|NZ_CP046108.1_1022133_1022991_-	pfam03618, Kinase-PPPase, Kinase/pyrophosphorylase	NA|147aa|up_8|NZ_CP046108.1_1023089_1023530_+	cd07153, Fur_like, Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators	NA|59aa|up_7|NZ_CP046108.1_1023695_1023872_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|150aa|up_6|NZ_CP046108.1_1023897_1024347_+	pfam09424, YqeY, Yqey-like protein	NA|341aa|up_5|NZ_CP046108.1_1024481_1025504_+	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]	NA|733aa|up_4|NZ_CP046108.1_1025532_1027731_+	COG1480, COG1480, Predicted membrane-associated HD superfamily hydrolase [General function prediction only]	NA|160aa|up_3|NZ_CP046108.1_1027730_1028210_+	PRK00016, PRK00016, metal-binding heat shock protein; Provisional	NA|134aa|up_2|NZ_CP046108.1_1028193_1028595_+	cd14265, UDPK_IM_like, Integral membrane undecaprenol kinase and similar enzymes	NA|301aa|up_1|NZ_CP046108.1_1028608_1029511_+	PRK00089, era, GTPase Era; Reviewed	NA|263aa|up_0|NZ_CP046108.1_1029593_1030382_+	TIGR00613, DNA_repair_protein_RecO, DNA repair protein RecO	NA|303aa|down_0|NZ_CP046108.1_1031117_1032026_+	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated	NA|695aa|down_1|NZ_CP046108.1_1032027_1034112_+	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated	NA|64aa|down_2|NZ_CP046108.1_1034151_1034343_+	PRK07758, PRK07758, hypothetical protein; Provisional	NA|311aa|down_3|NZ_CP046108.1_1034376_1035309_-	PRK02463, PRK02463, OxaA-like protein precursor; Provisional	NA|92aa|down_4|NZ_CP046108.1_1035475_1035751_-	COG1254, AcyP, Acylphosphatases [Energy production and conversion]	NA|259aa|down_5|NZ_CP046108.1_1035857_1036634_+	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|146aa|down_6|NZ_CP046108.1_1036653_1037091_+	PRK10562, PRK10562, putative acetyltransferase; Provisional	NA|262aa|down_7|NZ_CP046108.1_1037274_1038060_+	PRK05299, rpsB, 30S ribosomal protein S2; Provisional	NA|294aa|down_8|NZ_CP046108.1_1038165_1039047_+	PRK09377, tsf, elongation factor Ts; Provisional	NA|241aa|down_9|NZ_CP046108.1_1039307_1040030_+	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)
GCF_013344605.1_ASM1334460v1	NZ_CP046108	Enterococcus faecalis strain 133170041-3 chromosome, complete genome	2	1234036-1234336	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no		WYL,csa3,cas3,DEDDh,DinG,cas14j,csn2,cas2,cas1,cas9	Orphan	GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC,GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT,GTTTTAGAGTCATGTTGTTNAGAATGGTACCAAAAC	36,37,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	3,4,4	4	Orphan	WYL,csa3,cas3,DEDDh,DinG,cas14j,csn2,cas2,cas1,cas9	NA,NA	NA|250aa|up_9|NZ_CP046108.1_1222615_1223365_-	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|325aa|up_8|NZ_CP046108.1_1223577_1224552_+	PRK02458, PRK02458, ribose-phosphate pyrophosphokinase; Provisional	NA|382aa|up_7|NZ_CP046108.1_1224708_1225854_+	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|115aa|up_6|NZ_CP046108.1_1225921_1226266_+	pfam08866, DUF1831, Putative amino acid metabolism	NA|375aa|up_5|NZ_CP046108.1_1226491_1227616_+	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|172aa|up_4|NZ_CP046108.1_1229037_1229553_-	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea	NA|190aa|up_3|NZ_CP046108.1_1229685_1230255_+	pfam13305, WHG, WHG domain	NA|122aa|up_2|NZ_CP046108.1_1230352_1230718_+	pfam06279, DUF1033, Protein of unknown function (DUF1033)	NA|750aa|up_1|NZ_CP046108.1_1230680_1232930_+	PRK07726, PRK07726, DNA topoisomerase 3	NA|288aa|up_0|NZ_CP046108.1_1233014_1233878_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|473aa|down_0|NZ_CP046108.1_1234741_1236160_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|338aa|down_1|NZ_CP046108.1_1236156_1237170_+	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II	NA|578aa|down_2|NZ_CP046108.1_1237174_1238908_+	TIGR02857, transport_ATP-binding_protein, thiol reductant ABC exporter, CydD subunit	NA|589aa|down_3|NZ_CP046108.1_1238904_1240671_+	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|327aa|down_4|NZ_CP046108.1_1240750_1241731_-	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|302aa|down_5|NZ_CP046108.1_1241852_1242758_+	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated	NA|404aa|down_6|NZ_CP046108.1_1242786_1243998_+	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|808aa|down_7|NZ_CP046108.1_1244311_1246735_+	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|234aa|down_8|NZ_CP046108.1_1246864_1247566_+	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|250aa|down_9|NZ_CP046108.1_1247683_1248433_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
GCF_013344605.1_ASM1334460v1	NZ_CP046108	Enterococcus faecalis strain 133170041-3 chromosome, complete genome	3	2514314-2515141	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	WYL,csa3,cas3,DEDDh,DinG,cas14j,csn2,cas2,cas1,cas9	Type II-A,Type II-B,Type II-C	GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC,GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC,GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	12,12,6	12	TypeII-A,TypeII-B,TypeII-C	WYL,csa3,cas3,DEDDh,DinG,cas14j,csn2,cas2,cas1,cas9	NA,NA|78aa|down_4|NZ_CP046108.1_2521572_2521806_-	NA|412aa|up_9|NZ_CP046108.1_2502183_2503419_-	cd00840, MPP_Mre11_N, Mre11 nuclease, N-terminal metallophosphatase domain	NA|114aa|up_8|NZ_CP046108.1_2503574_2503916_-	PRK13676, PRK13676, YlbF/YmcA family competence regulator	NA|729aa|up_7|NZ_CP046108.1_2503978_2506165_-	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family	NA|284aa|up_6|NZ_CP046108.1_2506519_2507371_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|185aa|up_5|NZ_CP046108.1_2507494_2508049_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|507aa|up_4|NZ_CP046108.1_2508059_2509580_-	PLN02371, PLN02371, phosphoglucosamine mutase family protein	NA|152aa|up_3|NZ_CP046108.1_2509613_2510069_-	COG1438, ArgR, Arginine repressor [Transcription]	NA|506aa|up_2|NZ_CP046108.1_2510210_2511728_-	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|318aa|up_1|NZ_CP046108.1_2511728_2512682_-	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|338aa|up_0|NZ_CP046108.1_2512918_2513932_+	COG3594, NolL, Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]	csn2|220aa|down_0|NZ_CP046108.1_2515233_2515893_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|110aa|down_1|NZ_CP046108.1_2515893_2516223_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|289aa|down_2|NZ_CP046108.1_2516219_2517086_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1338aa|down_3|NZ_CP046108.1_2517086_2521100_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|78aa|down_4|NZ_CP046108.1_2521572_2521806_-	NA	NA|472aa|down_5|NZ_CP046108.1_2521950_2523366_-	TIGR01886, Beta-Ala-Xaa_dipeptidase, dipeptidase PepV	NA|245aa|down_6|NZ_CP046108.1_2523499_2524234_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|550aa|down_7|NZ_CP046108.1_2524342_2525992_-	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|515aa|down_8|NZ_CP046108.1_2526171_2527716_+	PRK14022, PRK14022, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase	NA|141aa|down_9|NZ_CP046108.1_2527844_2528267_+	COG0295, Cdd, Cytidine deaminase [Nucleotide transport and metabolism]
GCF_013344605.1_ASM1334460v1	NZ_CP046109	Enterococcus faecalis strain 133170041-3 plasmid pAD1, complete sequence	1	426-557	1,1	CRISPRCasFinder,PILER-CR	no			Orphan	TTTCGAAAGTGGGAAAAACCAAC,TTCGTTCGAAAGTGGGAAAAACCAACC	23,27	0	0	NA	NA	NA:NA	2,2	2	Orphan	WYL,csa3,cas3,DEDDh,DinG,cas14j,csn2,cas2,cas1,cas9	NA,NA|119aa|down_3|NZ_CP046109.1_5723_6080_+,NA|102aa|down_4|NZ_CP046109.1_6661_6967_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|546aa|down_0|NZ_CP046109.1_1166_2804_+	cd08504, PBP2_OppA, The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold	NA|385aa|down_1|NZ_CP046109.1_2814_3969_+	COG1916, COG1916, Uncharacterized homolog of PrgY (pheromone shutdown protein) [Function unknown]	NA|318aa|down_2|NZ_CP046109.1_4001_4955_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|119aa|down_3|NZ_CP046109.1_5723_6080_+	NA	NA|102aa|down_4|NZ_CP046109.1_6661_6967_+	NA	NA|892aa|down_5|NZ_CP046109.1_6977_9653_+	TIGR04320, hypothetical_protein, SEC10/PgrA surface exclusion domain	NA|93aa|down_6|NZ_CP046109.1_9672_9951_+	TIGR01981, UPF0051_protein_Rv1462/MT1509, FeS assembly protein SufD	NA|112aa|down_7|NZ_CP046109.1_10410_10746_+	pfam17400, DUF5406, Family of unknown function (DUF5406)	NA|1309aa|down_8|NZ_CP046109.1_11052_14979_+	pfam08363, GbpC, Glucan-binding protein C	NA|119aa|down_9|NZ_CP046109.1_15039_15396_+	pfam09627, PrgU, PrgU-like protein
