assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013343255.1_ASM1334325v1	NZ_CP045257	Proteus mirabilis strain L90-1 chromosome, complete genome	1	2444777-2444932	1	CRISPRCasFinder	no		c2c9_V-U4,DEDDh,cas3,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,TnsE_C	Orphan	ATAATTGCCTTTAGGTTGATATTT	24	0	0	NA	NA	NA	2	2	Orphan	c2c9_V-U4,DEDDh,cas3,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,TnsE_C	NA|546aa|up_6|NZ_CP045257.1_2435258_2436896_-,NA|115aa|down_2|NZ_CP045257.1_2447505_2447850_-,NA|271aa|down_4|NZ_CP045257.1_2448541_2449354_-,NA|107aa|down_5|NZ_CP045257.1_2449322_2449643_-,NA|163aa|down_6|NZ_CP045257.1_2449655_2450144_-,NA|153aa|down_8|NZ_CP045257.1_2452532_2452991_-,NA|151aa|down_9|NZ_CP045257.1_2453050_2453503_-	NA|187aa|up_9|NZ_CP045257.1_2432933_2433494_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|286aa|up_8|NZ_CP045257.1_2433556_2434414_-	PRK06680, PRK06680, D-amino acid aminotransferase; Reviewed	NA|193aa|up_7|NZ_CP045257.1_2434600_2435179_+	PRK10209, PRK10209, HdeD family acid-resistance protein	NA|546aa|up_6|NZ_CP045257.1_2435258_2436896_-	NA	NA|419aa|up_5|NZ_CP045257.1_2437495_2438752_+	pfam00924, MS_channel, Mechanosensitive ion channel	NA|813aa|up_4|NZ_CP045257.1_2439104_2441543_+	TIGR02166, Putative_dimethyl_sulfoxide_reductase_chain_YnfE, anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family	NA|206aa|up_3|NZ_CP045257.1_2441554_2442172_+	TIGR02951, anaerobic_dimethyl_sulfoxide_reductase_subunit_B, DMSO reductase, iron-sulfur subunit	NA|259aa|up_2|NZ_CP045257.1_2442175_2442952_+	COG3302, DmsC, DMSO reductase anchor subunit [General function prediction only]	NA|181aa|up_1|NZ_CP045257.1_2443067_2443610_-	pfam06041, DUF924, Bacterial protein of unknown function (DUF924)	NA|60aa|up_0|NZ_CP045257.1_2444178_2444358_+	pfam10753, Toxin_GhoT_OrtT, Toxin GhoT_OrtT	NA|219aa|down_0|NZ_CP045257.1_2445672_2446329_-	pfam11041, DUF2612, Protein of unknown function (DUF2612)	NA|396aa|down_1|NZ_CP045257.1_2446325_2447513_-	pfam04865, Baseplate_J, Baseplate J-like protein	NA|115aa|down_2|NZ_CP045257.1_2447505_2447850_-	NA	NA|231aa|down_3|NZ_CP045257.1_2447846_2448539_-	pfam18352, Gp138_N, Phage protein Gp138 N-terminal domain	NA|271aa|down_4|NZ_CP045257.1_2448541_2449354_-	NA	NA|107aa|down_5|NZ_CP045257.1_2449322_2449643_-	NA	NA|163aa|down_6|NZ_CP045257.1_2449655_2450144_-	NA	NA|768aa|down_7|NZ_CP045257.1_2450146_2452450_-	COG5412, COG5412, Phage-related protein [Function unknown]	NA|153aa|down_8|NZ_CP045257.1_2452532_2452991_-	NA	NA|151aa|down_9|NZ_CP045257.1_2453050_2453503_-	NA
GCF_013343255.1_ASM1334325v1	NZ_CP045257	Proteus mirabilis strain L90-1 chromosome, complete genome	2	2522506-2522901	2,1,1	CRISPRCasFinder,PILER-CR,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	c2c9_V-U4,DEDDh,cas3,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,TnsE_C	Type I-E	CGGTTCATCCCCGTATACACGGGGAACAC,GTTCATCCCCGTATACACGGGGAACAC,CCCGTATACACGGGGAACAC	29,27,20	1	1	2522535-2522566	NZ_CP045257.1_1303736-1303767	I-E:NA:NA	6,6,6	6	TypeI-E	c2c9_V-U4,DEDDh,cas3,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,TnsE_C	NA,NA	NA|221aa|up_9|NZ_CP045257.1_2511241_2511904_-	PRK11587, PRK11587, putative phosphatase; Provisional	NA|165aa|up_8|NZ_CP045257.1_2511938_2512433_-	PRK05445, PRK05445, YfbU family protein	NA|152aa|up_7|NZ_CP045257.1_2512573_2513029_-	PRK01816, PRK01816, hypothetical protein; Provisional	NA|401aa|up_6|NZ_CP045257.1_2513420_2514623_+	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|715aa|up_5|NZ_CP045257.1_2514700_2516845_+	PRK05632, PRK05632, phosphate acetyltransferase; Reviewed	NA|48aa|up_4|NZ_CP045257.1_2517181_2517325_+	pfam01848, HOK_GEF, Hok/gef family	NA|48aa|up_3|NZ_CP045257.1_2517722_2517866_+	pfam01848, HOK_GEF, Hok/gef family	NA|48aa|up_2|NZ_CP045257.1_2518262_2518406_+	pfam01848, HOK_GEF, Hok/gef family	NA|800aa|up_1|NZ_CP045257.1_2518636_2521036_+	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family	NA|408aa|up_0|NZ_CP045257.1_2521113_2522337_-	PRK13340, PRK13340, alanine racemase; Reviewed	cas2|99aa|down_0|NZ_CP045257.1_2522959_2523256_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP045257.1_2523258_2524179_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|226aa|down_2|NZ_CP045257.1_2524179_2524857_-	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas5|246aa|down_3|NZ_CP045257.1_2524856_2525594_-	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|345aa|down_4|NZ_CP045257.1_2525606_2526641_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|196aa|down_5|NZ_CP045257.1_2526707_2527295_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|533aa|down_6|NZ_CP045257.1_2527281_2528880_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|898aa|down_7|NZ_CP045257.1_2528876_2531570_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|419aa|down_8|NZ_CP045257.1_2532764_2534021_-	PRK09410, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed	NA|96aa|down_9|NZ_CP045257.1_2534031_2534319_-	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)
GCF_013343255.1_ASM1334325v1	NZ_CP045257	Proteus mirabilis strain L90-1 chromosome, complete genome	3	2531815-2532636	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	c2c9_V-U4,DEDDh,cas3,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,TnsE_C	Type I-E	CGGTTCATCCCCGTGCATACGGGGAACAC,CGGTTCATCCCCGTGCATACGGGGAACAC,CGGTTCATCCCCGTGCATACGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	13,13,13	13	TypeI-E	c2c9_V-U4,DEDDh,cas3,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,TnsE_C	NA,NA	NA|800aa|up_9|NZ_CP045257.1_2518636_2521036_+	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family	NA|408aa|up_8|NZ_CP045257.1_2521113_2522337_-	PRK13340, PRK13340, alanine racemase; Reviewed	cas2|99aa|up_7|NZ_CP045257.1_2522959_2523256_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|up_6|NZ_CP045257.1_2523258_2524179_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|226aa|up_5|NZ_CP045257.1_2524179_2524857_-	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas5|246aa|up_4|NZ_CP045257.1_2524856_2525594_-	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|345aa|up_3|NZ_CP045257.1_2525606_2526641_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|196aa|up_2|NZ_CP045257.1_2526707_2527295_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|533aa|up_1|NZ_CP045257.1_2527281_2528880_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|898aa|up_0|NZ_CP045257.1_2528876_2531570_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|419aa|down_0|NZ_CP045257.1_2532764_2534021_-	PRK09410, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed	NA|96aa|down_1|NZ_CP045257.1_2534031_2534319_-	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|148aa|down_2|NZ_CP045257.1_2534348_2534792_-	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|349aa|down_3|NZ_CP045257.1_2535018_2536065_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|181aa|down_4|NZ_CP045257.1_2536061_2536604_-	PRK15393, PRK15393, NUDIX hydrolase YfcD; Provisional	NA|205aa|down_5|NZ_CP045257.1_2536800_2537415_+	PRK13972, PRK13972, GSH-dependent disulfide bond oxidoreductase; Provisional	NA|302aa|down_6|NZ_CP045257.1_2537479_2538385_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|194aa|down_7|NZ_CP045257.1_2538404_2538986_-	PRK06029, PRK06029, UbiX family flavin prenyltransferase	NA|506aa|down_8|NZ_CP045257.1_2539107_2540625_-	PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional	NA|164aa|down_9|NZ_CP045257.1_2540655_2541147_-	PRK10845, PRK10845, colicin V production protein; Provisional
GCF_013343255.1_ASM1334325v1	NZ_CP045257	Proteus mirabilis strain L90-1 chromosome, complete genome	4	2776435-2776577	4	CRISPRCasFinder	no		c2c9_V-U4,DEDDh,cas3,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,TnsE_C	Orphan	GGTGATATCAATTTCACAGGTGG	23	0	0	NA	NA	NA	2	2	Orphan	c2c9_V-U4,DEDDh,cas3,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,TnsE_C	NA|74aa|up_8|NZ_CP045257.1_2767105_2767327_+,NA|143aa|up_7|NZ_CP045257.1_2767394_2767823_+,NA|49aa|up_1|NZ_CP045257.1_2774372_2774519_+,NA|68aa|up_0|NZ_CP045257.1_2774519_2774723_+,NA	NA|300aa|up_9|NZ_CP045257.1_2766003_2766903_+	PRK03635, PRK03635, ArgP/LysG family DNA-binding transcriptional regulator	NA|74aa|up_8|NZ_CP045257.1_2767105_2767327_+	NA	NA|143aa|up_7|NZ_CP045257.1_2767394_2767823_+	NA	NA|245aa|up_6|NZ_CP045257.1_2767990_2768725_-	PRK11087, PRK11087, oxidative stress defense protein; Provisional	NA|208aa|up_5|NZ_CP045257.1_2768815_2769439_-	PRK09304, PRK09304, arginine exporter ArgO	NA|287aa|up_4|NZ_CP045257.1_2769607_2770468_-	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS	NA|124aa|up_3|NZ_CP045257.1_2770559_2770931_-	PRK05248, PRK05248, hypothetical protein; Provisional	NA|866aa|up_2|NZ_CP045257.1_2771101_2773699_-	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated	NA|49aa|up_1|NZ_CP045257.1_2774372_2774519_+	NA	NA|68aa|up_0|NZ_CP045257.1_2774519_2774723_+	NA	NA|476aa|down_0|NZ_CP045257.1_2789026_2790454_-	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed	NA|622aa|down_1|NZ_CP045257.1_2790655_2792521_-	PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated	NA|889aa|down_2|NZ_CP045257.1_2792533_2795200_-	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed	NA|262aa|down_3|NZ_CP045257.1_2795363_2796149_-	PRK09464, pdhR, pyruvate dehydrogenase complex transcriptional repressor PdhR	NA|181aa|down_4|NZ_CP045257.1_2796460_2797003_-	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA|148aa|down_5|NZ_CP045257.1_2797213_2797657_+	PRK10574, PRK10574, putative major pilin subunit; Provisional	NA|368aa|down_6|NZ_CP045257.1_2797756_2798860_+	PRK10436, PRK10436, hypothetical protein; Provisional	NA|400aa|down_7|NZ_CP045257.1_2798856_2800056_+	PRK10573, PRK10573, protein transport protein HofC	NA|205aa|down_8|NZ_CP045257.1_2800333_2800948_+	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|251aa|down_9|NZ_CP045257.1_2800950_2801703_+	PRK05287, PRK05287, cell division protein ZapD
