assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013343095.1_ASM1334309v1	NZ_CP054569	Achromobacter denitrificans strain FDAARGOS_787 chromosome, complete genome	1	660166-660262	1	CRISPRCasFinder	no		WYL,csa3,DEDDh,DinG,RT	Orphan	CGGCAGCATGGGTTTCGCGTGTTCGGC	27	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,DinG,RT	NA,NA	NA|418aa|up_9|NZ_CP054569.1_646881_648135_-	pfam13433, Peripla_BP_5, Periplasmic binding protein domain	NA|611aa|up_8|NZ_CP054569.1_648495_650328_+	PRK08186, PRK08186, allophanate hydrolase; Provisional	NA|1213aa|up_7|NZ_CP054569.1_650356_653995_+	TIGR02712, Includes:_Allophanate_hydrolase, urea carboxylase	NA|244aa|up_6|NZ_CP054569.1_653991_654723_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|272aa|up_5|NZ_CP054569.1_654733_655549_-	COG5662, COG5662, Predicted transmembrane transcriptional regulator (anti-sigma factor) [Transcription]	NA|171aa|up_4|NZ_CP054569.1_655550_656063_-	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|123aa|up_3|NZ_CP054569.1_656094_656463_-	COG4315, COG4315, Uncharacterized protein conserved in bacteria [Function unknown]	NA|151aa|up_2|NZ_CP054569.1_656553_657006_-	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|159aa|up_1|NZ_CP054569.1_657092_657569_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|327aa|up_0|NZ_CP054569.1_658288_659269_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|455aa|down_0|NZ_CP054569.1_660315_661680_-	COG4102, COG4102, Uncharacterized protein conserved in bacteria [Function unknown]	NA|522aa|down_1|NZ_CP054569.1_661927_663493_-	pfam08811, DUF1800, Protein of unknown function (DUF1800)	NA|235aa|down_2|NZ_CP054569.1_663593_664298_-	cd05344, BKR_like_SDR_like, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR	NA|439aa|down_3|NZ_CP054569.1_664404_665721_-	COG2133, COG2133, Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]	NA|109aa|down_4|NZ_CP054569.1_665778_666105_-	pfam13670, PepSY_2, Peptidase propeptide and YPEB domain	NA|116aa|down_5|NZ_CP054569.1_666298_666646_+	COG3212, COG3212, Predicted membrane protein [Function unknown]	NA|221aa|down_6|NZ_CP054569.1_666645_667308_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|460aa|down_7|NZ_CP054569.1_667304_668684_+	cd16954, HATPase_PhoQ-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli PhoQ and Providencia stuartii AarG	NA|143aa|down_8|NZ_CP054569.1_668698_669127_-	cd00293, USP_Like, Usp: Universal stress protein family	NA|142aa|down_9|NZ_CP054569.1_669144_669570_-	pfam00582, Usp, Universal stress protein family
GCF_013343095.1_ASM1334309v1	NZ_CP054569	Achromobacter denitrificans strain FDAARGOS_787 chromosome, complete genome	2	1395790-1395904	2	CRISPRCasFinder	no		WYL,csa3,DEDDh,DinG,RT	Orphan	CCCCCTCGGGGGGCAGCAAGCGCGCTCCGCG	31	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,DinG,RT	NA,NA	NA|416aa|up_9|NZ_CP054569.1_1385833_1387081_-	PRK10307, PRK10307, colanic acid biosynthesis glycosyltransferase WcaI	NA|187aa|up_8|NZ_CP054569.1_1387077_1387638_-	PRK10502, PRK10502, putative acyl transferase; Provisional	NA|296aa|up_7|NZ_CP054569.1_1387634_1388522_-	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide	NA|377aa|up_6|NZ_CP054569.1_1388535_1389666_-	cd03811, GT4_GT28_WabH-like, family 4 and family 28 glycosyltransferases similar to Klebsiella WabH	NA|431aa|up_5|NZ_CP054569.1_1389658_1390951_-	pfam04932, Wzy_C, O-Antigen ligase	NA|301aa|up_4|NZ_CP054569.1_1390978_1391881_-	cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen biosynthesis	NA|439aa|up_3|NZ_CP054569.1_1391901_1393218_-	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|318aa|up_2|NZ_CP054569.1_1393269_1394223_-	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs	NA|370aa|up_1|NZ_CP054569.1_1394229_1395339_-	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]	NA|121aa|up_0|NZ_CP054569.1_1395349_1395712_-	COG5652, COG5652, Predicted integral membrane protein [Function unknown]	NA|477aa|down_0|NZ_CP054569.1_1395923_1397354_-	TIGR01479, Mannose-1-phosphate_guanylyltransferase, mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA|151aa|down_1|NZ_CP054569.1_1397359_1397812_-	cd03430, GDPMH, GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily	NA|470aa|down_2|NZ_CP054569.1_1397861_1399271_-	TIGR03023, Sugar_transferase	NA|379aa|down_3|NZ_CP054569.1_1399521_1400658_+	PRK15078, PRK15078, polysaccharide export protein Wza; Provisional	NA|754aa|down_4|NZ_CP054569.1_1400719_1402981_+	TIGR01005, Putative_tyrosine-protein_kinase_EpsB, exopolysaccharide transport protein family	NA|468aa|down_5|NZ_CP054569.1_1403001_1404405_+	cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e	NA|556aa|down_6|NZ_CP054569.1_1404418_1406086_+	PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed	NA|350aa|down_7|NZ_CP054569.1_1406100_1407150_+	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs	NA|316aa|down_8|NZ_CP054569.1_1407335_1408283_+	TIGR01172, Serine_acetyltransferase, serine O-acetyltransferase	NA|273aa|down_9|NZ_CP054569.1_1408340_1409159_+	PRK05333, PRK05333, NAD-dependent protein deacetylase
GCF_013343095.1_ASM1334309v1	NZ_CP054569	Achromobacter denitrificans strain FDAARGOS_787 chromosome, complete genome	3	3727681-3727788	3	CRISPRCasFinder	no	csa3	WYL,csa3,DEDDh,DinG,RT	Type I-A	AAAAAAAGCCCCCACGCCGCGCAAGC	26	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,DinG,RT	NA,NA	NA|251aa|up_9|NZ_CP054569.1_3717734_3718487_-	PRK07478, PRK07478, short chain dehydrogenase; Provisional	NA|426aa|up_8|NZ_CP054569.1_3718587_3719865_-	pfam01694, Rhomboid, Rhomboid family	NA|144aa|up_7|NZ_CP054569.1_3720337_3720769_-	cd04765, HTH_MlrA-like_sg2, Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators	NA|114aa|up_6|NZ_CP054569.1_3720826_3721168_-	PRK00285, ihfA, integration host factor subunit alpha; Reviewed	NA|806aa|up_5|NZ_CP054569.1_3721171_3723589_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|341aa|up_4|NZ_CP054569.1_3723602_3724625_-	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated	NA|120aa|up_3|NZ_CP054569.1_3724702_3725062_-	PRK05185, rplT, 50S ribosomal protein L20; Provisional	NA|66aa|up_2|NZ_CP054569.1_3725077_3725275_-	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed	NA|509aa|up_1|NZ_CP054569.1_3725663_3727190_-	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]	NA|84aa|up_0|NZ_CP054569.1_3727361_3727613_-	pfam04380, BMFP, Membrane fusogenic activity	NA|312aa|down_0|NZ_CP054569.1_3727799_3728735_-	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|194aa|down_1|NZ_CP054569.1_3728829_3729411_+	COG5516, COG5516, Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding [General function prediction only]	NA|321aa|down_2|NZ_CP054569.1_3729421_3730384_-	cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	csa3|101aa|down_3|NZ_CP054569.1_3730447_3730750_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|113aa|down_4|NZ_CP054569.1_3731424_3731763_+	pfam00543, P-II, Nitrogen regulatory protein P-II	NA|413aa|down_5|NZ_CP054569.1_3731795_3733034_+	PRK10666, PRK10666, ammonium transporter AmtB	NA|585aa|down_6|NZ_CP054569.1_3733209_3734964_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|90aa|down_7|NZ_CP054569.1_3735022_3735292_-	pfam00381, PTS-HPr, PTS HPr component phosphorylation site	NA|134aa|down_8|NZ_CP054569.1_3735403_3735805_-	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|323aa|down_9|NZ_CP054569.1_3735821_3736790_-	PRK05246, PRK05246, glutathione synthetase; Provisional
GCF_013343095.1_ASM1334309v1	NZ_CP054569	Achromobacter denitrificans strain FDAARGOS_787 chromosome, complete genome	4	3994954-3995076	4	CRISPRCasFinder	no		WYL,csa3,DEDDh,DinG,RT	Orphan	TTTTCATCGCCGGGCCGCCCCAAGATGAAAACGCCCCCTT	40	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,DinG,RT	NA|77aa|up_5|NZ_CP054569.1_3988478_3988709_-,NA	NA|653aa|up_9|NZ_CP054569.1_3976009_3977968_+	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	NA|452aa|up_8|NZ_CP054569.1_3978018_3979374_+	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|488aa|up_7|NZ_CP054569.1_3985969_3987433_+	PRK11712, PRK11712, ribonuclease G; Provisional	NA|234aa|up_6|NZ_CP054569.1_3987639_3988341_+	pfam11254, DUF3053, Protein of unknown function (DUF3053)	NA|77aa|up_5|NZ_CP054569.1_3988478_3988709_-	NA	NA|602aa|up_4|NZ_CP054569.1_3988831_3990637_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|592aa|up_3|NZ_CP054569.1_3990797_3992573_-	TIGR02203, Lipid_A_export_ATP-binding/permease_protein_msbA	NA|324aa|up_2|NZ_CP054569.1_3992676_3993648_+	pfam01075, Glyco_transf_9, Glycosyltransferase family 9 (heptosyltransferase)	NA|255aa|up_1|NZ_CP054569.1_3993660_3994425_+	cd06259, YdcF-like, YdcF-like	NA|90aa|up_0|NZ_CP054569.1_3994470_3994740_+	pfam03692, CxxCxxCC, Putative zinc- or iron-chelating domain	NA|197aa|down_0|NZ_CP054569.1_3995164_3995755_+	cd00773, HisRS-like_core, Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain	NA|387aa|down_1|NZ_CP054569.1_3995751_3996912_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|242aa|down_2|NZ_CP054569.1_3996886_3997612_-	cd10918, CE4_NodB_like_5s_6s, Putative catalytic NodB homology domain of PgaB, IcaB, and similar proteins which consist of a deformed (beta/alpha)8 barrel fold with 5- or 6-strands	NA|370aa|down_3|NZ_CP054569.1_3997978_3999088_-	cd03819, GT4_WavL-like, Vibrio cholerae WavL and similar sequences	NA|251aa|down_4|NZ_CP054569.1_3999084_3999837_-	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide	NA|283aa|down_5|NZ_CP054569.1_3999833_4000682_-	cd10969, CE4_Ecf1_like_5s, Putative catalytic NodB homology domain of a hypothetical protein Ecf1 from Escherichia coli and similar proteins	NA|367aa|down_6|NZ_CP054569.1_4000678_4001779_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|1164aa|down_7|NZ_CP054569.1_4001778_4005270_-	PRK05673, dnaE, DNA polymerase III subunit alpha; Validated	NA|300aa|down_8|NZ_CP054569.1_4005385_4006285_+	NF033391, lipid_A_LpxO, lipid A hydroxylase LpxO	NA|1308aa|down_9|NZ_CP054569.1_4006342_4010266_-	TIGR01967, ATP-dependent_RNA_helicase_HrpA, RNA helicase HrpA
GCF_013343095.1_ASM1334309v1	NZ_CP054569	Achromobacter denitrificans strain FDAARGOS_787 chromosome, complete genome	5	4250560-4250673	5	CRISPRCasFinder	no	DEDDh	WYL,csa3,DEDDh,DinG,RT	Unclear	GGGGGGAAGCTAGCCCGCGCAGCGGGCG	28	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,DinG,RT	NA,NA	NA|481aa|up_9|NZ_CP054569.1_4240655_4242098_+	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|215aa|up_8|NZ_CP054569.1_4242130_4242775_-	TIGR01262, Maleylacetoacetate_isomerase, maleylacetoacetate isomerase	NA|326aa|up_7|NZ_CP054569.1_4242827_4243805_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|159aa|up_6|NZ_CP054569.1_4243804_4244281_-	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]	NA|226aa|up_5|NZ_CP054569.1_4244331_4245009_+	PRK00024, PRK00024, DNA repair protein RadC	NA|209aa|up_4|NZ_CP054569.1_4245104_4245731_+	TIGR03035, trp_arylform, arylformamidase	NA|283aa|up_3|NZ_CP054569.1_4245933_4246782_+	TIGR03036, trp_2_3_diox, tryptophan 2,3-dioxygenase	NA|89aa|up_2|NZ_CP054569.1_4246977_4247244_+	PRK01678, rpmE2, type B 50S ribosomal protein L31	NA|577aa|up_1|NZ_CP054569.1_4247368_4249099_+	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]	NA|467aa|up_0|NZ_CP054569.1_4249095_4250496_+	cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM	NA|438aa|down_0|NZ_CP054569.1_4250701_4252015_-	TIGR02155, Phenylacetate-coenzyme_A_ligase, phenylacetate-CoA ligase	NA|157aa|down_1|NZ_CP054569.1_4252126_4252597_-	TIGR02286, Acyl-coenzyme_A_thioesterase_PaaI, phenylacetic acid degradation protein PaaD	NA|263aa|down_2|NZ_CP054569.1_4252596_4253385_-	PRK08140, PRK08140, enoyl-CoA hydratase; Provisional	NA|555aa|down_3|NZ_CP054569.1_4253518_4255183_-	cd07127, ALDH_PAD-PaaZ, Phenylacetic acid degradation proteins PaaZ (Escherichia coli) and PaaN (Pseudomonas putida)-like	NA|363aa|down_4|NZ_CP054569.1_4255230_4256319_-	TIGR02160, 12-phenylacetyl-CoA_epoxidase_subunit_E, phenylacetate-CoA oxygenase/reductase, PaaK subunit	NA|169aa|down_5|NZ_CP054569.1_4256332_4256839_-	TIGR02159, Putative_12-phenylacetyl-CoA_epoxidase_subunit_D, phenylacetate-CoA oxygenase, PaaJ subunit	NA|255aa|down_6|NZ_CP054569.1_4256835_4257600_-	pfam05138, PaaA_PaaC, Phenylacetic acid catabolic protein	NA|95aa|down_7|NZ_CP054569.1_4257618_4257903_-	PRK13781, paaB, phenylacetate-CoA oxygenase subunit PaaB; Provisional	NA|330aa|down_8|NZ_CP054569.1_4258099_4259089_-	PRK13778, paaA, phenylacetate-CoA oxygenase subunit PaaA; Provisional	NA|310aa|down_9|NZ_CP054569.1_4259262_4260192_+	TIGR02277, Transcriptional_repressor_PaaX, phenylacetic acid degradation operon negative regulatory protein PaaX
GCF_013343095.1_ASM1334309v1	NZ_CP054569	Achromobacter denitrificans strain FDAARGOS_787 chromosome, complete genome	6	4774783-4774854	6	CRISPRCasFinder	no		WYL,csa3,DEDDh,DinG,RT	Orphan	CCGGCGTTCTTGCCCTGCGCCAG	23	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,DinG,RT	NA|127aa|up_6|NZ_CP054569.1_4765443_4765824_-,NA|57aa|down_1|NZ_CP054569.1_4777786_4777957_-	NA|234aa|up_9|NZ_CP054569.1_4758742_4759444_-	pfam18160, SLATT_5, SMODS and SLOG-associating 2TM effector domain family 5	NA|1548aa|up_8|NZ_CP054569.1_4759657_4764301_-	pfam03797, Autotransporter, Autotransporter beta-domain	NA|290aa|up_7|NZ_CP054569.1_4764506_4765376_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|127aa|up_6|NZ_CP054569.1_4765443_4765824_-	NA	NA|119aa|up_5|NZ_CP054569.1_4766470_4766827_-	pfam01381, HTH_3, Helix-turn-helix	NA|400aa|up_4|NZ_CP054569.1_4767118_4768318_-	COG2200, Rtn, c-di-GMP phosphodiesterase class I (EAL domain) [Signal    transduction mechanisms]	NA|330aa|up_3|NZ_CP054569.1_4769171_4770161_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|392aa|up_2|NZ_CP054569.1_4770270_4771446_-	pfam01070, FMN_dh, FMN-dependent dehydrogenase	NA|466aa|up_1|NZ_CP054569.1_4771442_4772840_-	cd16348, VOC_YdcJ_like, uncharacterized metal-dependent enzyme similar to Shigella flexneri YdcJ	NA|314aa|up_0|NZ_CP054569.1_4772921_4773863_-	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|752aa|down_0|NZ_CP054569.1_4775493_4777749_-	TIGR03396, PC_PLC, phospholipase C, phosphocholine-specific, Pseudomonas-type	NA|57aa|down_1|NZ_CP054569.1_4777786_4777957_-	NA	NA|335aa|down_2|NZ_CP054569.1_4778046_4779051_-	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|283aa|down_3|NZ_CP054569.1_4779047_4779896_-	cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system	NA|313aa|down_4|NZ_CP054569.1_4779919_4780858_-	cd01071, PBP2_PhnD_like, Substrate binding domain of phosphonate uptake system-like, a member of the type 2 periplasmic-binding fold superfamily	NA|282aa|down_5|NZ_CP054569.1_4781087_4781933_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|278aa|down_6|NZ_CP054569.1_4781926_4782760_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|166aa|down_7|NZ_CP054569.1_4782887_4783385_-	PRK06870, secG, preprotein translocase subunit SecG; Reviewed	NA|249aa|down_8|NZ_CP054569.1_4783406_4784153_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|326aa|down_9|NZ_CP054569.1_4784273_4785251_-	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase
GCF_013343095.1_ASM1334309v1	NZ_CP054569	Achromobacter denitrificans strain FDAARGOS_787 chromosome, complete genome	7	4775170-4775240	7	CRISPRCasFinder	no		WYL,csa3,DEDDh,DinG,RT	Orphan	CCGGCGTTCTTGCCCTGCGCCAG	23	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,DinG,RT	NA|127aa|up_6|NZ_CP054569.1_4765443_4765824_-,NA|57aa|down_1|NZ_CP054569.1_4777786_4777957_-	NA|234aa|up_9|NZ_CP054569.1_4758742_4759444_-	pfam18160, SLATT_5, SMODS and SLOG-associating 2TM effector domain family 5	NA|1548aa|up_8|NZ_CP054569.1_4759657_4764301_-	pfam03797, Autotransporter, Autotransporter beta-domain	NA|290aa|up_7|NZ_CP054569.1_4764506_4765376_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|127aa|up_6|NZ_CP054569.1_4765443_4765824_-	NA	NA|119aa|up_5|NZ_CP054569.1_4766470_4766827_-	pfam01381, HTH_3, Helix-turn-helix	NA|400aa|up_4|NZ_CP054569.1_4767118_4768318_-	COG2200, Rtn, c-di-GMP phosphodiesterase class I (EAL domain) [Signal    transduction mechanisms]	NA|330aa|up_3|NZ_CP054569.1_4769171_4770161_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|392aa|up_2|NZ_CP054569.1_4770270_4771446_-	pfam01070, FMN_dh, FMN-dependent dehydrogenase	NA|466aa|up_1|NZ_CP054569.1_4771442_4772840_-	cd16348, VOC_YdcJ_like, uncharacterized metal-dependent enzyme similar to Shigella flexneri YdcJ	NA|314aa|up_0|NZ_CP054569.1_4772921_4773863_-	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|752aa|down_0|NZ_CP054569.1_4775493_4777749_-	TIGR03396, PC_PLC, phospholipase C, phosphocholine-specific, Pseudomonas-type	NA|57aa|down_1|NZ_CP054569.1_4777786_4777957_-	NA	NA|335aa|down_2|NZ_CP054569.1_4778046_4779051_-	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|283aa|down_3|NZ_CP054569.1_4779047_4779896_-	cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system	NA|313aa|down_4|NZ_CP054569.1_4779919_4780858_-	cd01071, PBP2_PhnD_like, Substrate binding domain of phosphonate uptake system-like, a member of the type 2 periplasmic-binding fold superfamily	NA|282aa|down_5|NZ_CP054569.1_4781087_4781933_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|278aa|down_6|NZ_CP054569.1_4781926_4782760_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|166aa|down_7|NZ_CP054569.1_4782887_4783385_-	PRK06870, secG, preprotein translocase subunit SecG; Reviewed	NA|249aa|down_8|NZ_CP054569.1_4783406_4784153_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|326aa|down_9|NZ_CP054569.1_4784273_4785251_-	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase
GCF_013343095.1_ASM1334309v1	NZ_CP054569	Achromobacter denitrificans strain FDAARGOS_787 chromosome, complete genome	8	4832687-4832775	8	CRISPRCasFinder	no		WYL,csa3,DEDDh,DinG,RT	Orphan	CCCGCGCCGGTGTACGTGGCGCC	23	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,DinG,RT	NA|66aa|up_1|NZ_CP054569.1_4831379_4831577_-,NA|53aa|down_0|NZ_CP054569.1_4833017_4833176_-,NA|83aa|down_1|NZ_CP054569.1_4833162_4833411_-	NA|551aa|up_9|NZ_CP054569.1_4821513_4823166_-	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|283aa|up_8|NZ_CP054569.1_4823338_4824187_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|529aa|up_7|NZ_CP054569.1_4824245_4825832_-	COG4943, COG4943, Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]	NA|327aa|up_6|NZ_CP054569.1_4826002_4826983_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|302aa|up_5|NZ_CP054569.1_4827021_4827927_-	cd00408, DHDPS-like, Dihydrodipicolinate synthase family	NA|376aa|up_4|NZ_CP054569.1_4827942_4829070_-	cd03316, MR_like, Mandelate racemase (MR)-like subfamily of the enolase superfamily	NA|293aa|up_3|NZ_CP054569.1_4829231_4830110_+	cd08427, PBP2_LTTR_like_2, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|398aa|up_2|NZ_CP054569.1_4830122_4831316_-	PRK05985, PRK05985, cytosine deaminase; Provisional	NA|66aa|up_1|NZ_CP054569.1_4831379_4831577_-	NA	NA|168aa|up_0|NZ_CP054569.1_4831768_4832272_+	cd06552, ASCH_yqfb_like, ASC-1 homology domain, subfamily similar to Escherichia coli Yqfb	NA|53aa|down_0|NZ_CP054569.1_4833017_4833176_-	NA	NA|83aa|down_1|NZ_CP054569.1_4833162_4833411_-	NA	NA|449aa|down_2|NZ_CP054569.1_4833641_4834988_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|447aa|down_3|NZ_CP054569.1_4835030_4836371_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|264aa|down_4|NZ_CP054569.1_4836448_4837240_-	cd07581, nitrilase_3, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|423aa|down_5|NZ_CP054569.1_4837393_4838662_+	cd06818, PLPDE_III_cryptic_DSD, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase	NA|520aa|down_6|NZ_CP054569.1_4838812_4840372_+	cd08502, PBP2_NikA_DppA_OppA_like_16, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|326aa|down_7|NZ_CP054569.1_4840796_4841774_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|314aa|down_8|NZ_CP054569.1_4841808_4842750_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|290aa|down_9|NZ_CP054569.1_4842882_4843752_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
GCF_013343095.1_ASM1334309v1	NZ_CP054569	Achromobacter denitrificans strain FDAARGOS_787 chromosome, complete genome	9	4892123-4892340	9	CRISPRCasFinder	no		WYL,csa3,DEDDh,DinG,RT	Orphan	GCCCCCACGCCGCGCCCCTTCCGGGGCTAGCTGGCCCCCCAAGGGGGCTTTTTT	54	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,DinG,RT	NA|79aa|up_4|NZ_CP054569.1_4887014_4887251_-,NA|64aa|down_5|NZ_CP054569.1_4897046_4897238_-	NA|342aa|up_9|NZ_CP054569.1_4881530_4882556_-	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|375aa|up_8|NZ_CP054569.1_4882669_4883794_-	PRK10767, PRK10767, chaperone protein DnaJ; Provisional	NA|642aa|up_7|NZ_CP054569.1_4883903_4885829_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|135aa|up_6|NZ_CP054569.1_4885909_4886314_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|185aa|up_5|NZ_CP054569.1_4886328_4886883_-	PRK14139, PRK14139, heat shock protein GrpE; Provisional	NA|79aa|up_4|NZ_CP054569.1_4887014_4887251_-	NA	NA|364aa|up_3|NZ_CP054569.1_4887263_4888355_-	PRK00035, hemH, ferrochelatase; Reviewed	NA|335aa|up_2|NZ_CP054569.1_4888401_4889406_-	PRK00082, hrcA, heat-inducible transcription repressor; Provisional	NA|300aa|up_1|NZ_CP054569.1_4889544_4890444_+	PRK02155, ppnK, NAD kinase	NA|554aa|up_0|NZ_CP054569.1_4890457_4892119_+	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|140aa|down_0|NZ_CP054569.1_4892456_4892876_-	pfam01475, FUR, Ferric uptake regulator family	NA|179aa|down_1|NZ_CP054569.1_4893029_4893566_+	pfam04355, SmpA_OmlA, SmpA / OmlA family	NA|264aa|down_2|NZ_CP054569.1_4893582_4894374_+	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|345aa|down_3|NZ_CP054569.1_4894464_4895499_-	PRK00046, murB, UDP-N-acetylmuramate dehydrogenase	NA|308aa|down_4|NZ_CP054569.1_4896008_4896932_-	cd08417, PBP2_Nitroaromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold	NA|64aa|down_5|NZ_CP054569.1_4897046_4897238_-	NA	NA|235aa|down_6|NZ_CP054569.1_4897194_4897899_+	cd02588, HAD_L2-DEX, L-2-haloacid dehalogenase	NA|404aa|down_7|NZ_CP054569.1_4897900_4899112_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|149aa|down_8|NZ_CP054569.1_4899104_4899551_+	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|323aa|down_9|NZ_CP054569.1_4899633_4900602_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold
GCF_013343095.1_ASM1334309v1	NZ_CP054569	Achromobacter denitrificans strain FDAARGOS_787 chromosome, complete genome	10	5786848-5786965	10	CRISPRCasFinder	no		WYL,csa3,DEDDh,DinG,RT	Orphan	GCCGCCCCAAGGCGGCGCAGCCCCCCCGGGGGGCAGCAAGC	41	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,DinG,RT	NA,NA|230aa|down_0|NZ_CP054569.1_5786995_5787685_-,NA|247aa|down_2|NZ_CP054569.1_5788845_5789586_+	NA|210aa|up_9|NZ_CP054569.1_5774291_5774921_-	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold	NA|274aa|up_8|NZ_CP054569.1_5774962_5775784_-	cd06662, SURF1, SURF1 superfamily	NA|67aa|up_7|NZ_CP054569.1_5775820_5776021_+	pfam11137, DUF2909, Protein of unknown function (DUF2909)	NA|292aa|up_6|NZ_CP054569.1_5776102_5776978_-	cd01665, Cyt_c_Oxidase_III, Cytochrome c oxidase subunit III	NA|75aa|up_5|NZ_CP054569.1_5777016_5777241_-	pfam11174, DUF2970, Protein of unknown function (DUF2970)	NA|536aa|up_4|NZ_CP054569.1_5777407_5779015_-	cd01663, Cyt_c_Oxidase_I, Cytochrome C oxidase subunit I	NA|386aa|up_3|NZ_CP054569.1_5779120_5780278_-	COG1622, CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]	NA|271aa|up_2|NZ_CP054569.1_5780567_5781380_+	cd03676, Nudix_hydrolase_3, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|280aa|up_1|NZ_CP054569.1_5784298_5785138_+	PRK11148, PRK11148, cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional	NA|295aa|up_0|NZ_CP054569.1_5785738_5786623_-	PRK06596, PRK06596, RNA polymerase factor sigma-32; Reviewed	NA|230aa|down_0|NZ_CP054569.1_5786995_5787685_-	NA	NA|289aa|down_1|NZ_CP054569.1_5787745_5788612_-	TIGR02821, S-formylglutathione_hydrolase, S-formylglutathione hydrolase	NA|247aa|down_2|NZ_CP054569.1_5788845_5789586_+	NA	NA|1580aa|down_3|NZ_CP054569.1_5789994_5794734_+	PRK11750, gltB, glutamate synthase subunit alpha; Provisional	NA|489aa|down_4|NZ_CP054569.1_5794742_5796209_+	PRK12810, gltD, glutamate synthase subunit beta; Reviewed	NA|213aa|down_5|NZ_CP054569.1_5796402_5797041_+	PRK10959, PRK10959, outer membrane protein W; Provisional	NA|291aa|down_6|NZ_CP054569.1_5797078_5797951_-	cd08442, PBP2_YofA_SoxR_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators, YofA and SoxR, contains the type 2 periplasmic binding fold	NA|421aa|down_7|NZ_CP054569.1_5798016_5799279_+	cd06180, MFS_YjiJ, Uncharacterized protein YjiJ and similar proteins of the Major Facilitator Superfamily of transporters	NA|326aa|down_8|NZ_CP054569.1_5799275_5800253_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|354aa|down_9|NZ_CP054569.1_5800271_5801333_+	cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites
