assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013343055.1_ASM1334305v1	NZ_CP054575	Staphylococcus saprophyticus strain UTI-050 chromosome, complete genome	1	271022-271119	1	CRISPRCasFinder	no		csa3,WYL,DEDDh,cas3,DinG	Orphan	TTGCATAAGAATCACTAAGGAAATT	25	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DEDDh,cas3,DinG,Cas14u_CAS-V,cas14j	NA,NA|69aa|down_5|NZ_CP054575.1_277537_277744_+	NA|107aa|up_9|NZ_CP054575.1_261392_261713_+	cd05564, PTS_IIB_chitobiose_lichenan, PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|109aa|up_8|NZ_CP054575.1_261723_262050_+	pfam02255, PTS_IIA, PTS system, Lactose/Cellobiose specific IIA subunit	NA|265aa|up_7|NZ_CP054575.1_262283_263078_+	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|240aa|up_6|NZ_CP054575.1_263061_263781_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|244aa|up_5|NZ_CP054575.1_263777_264509_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|306aa|up_4|NZ_CP054575.1_265462_266380_-	PRK12921, PRK12921, oxidoreductase	NA|252aa|up_3|NZ_CP054575.1_266593_267349_+	pfam02517, Abi, CAAX protease self-immunity	NA|273aa|up_2|NZ_CP054575.1_267690_268509_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|311aa|up_1|NZ_CP054575.1_268552_269485_+	cd05290, LDH_3, A subgroup of L-lactate dehydrogenases	NA|357aa|up_0|NZ_CP054575.1_269650_270721_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|430aa|down_0|NZ_CP054575.1_271126_272416_-	COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]	NA|302aa|down_1|NZ_CP054575.1_272633_273539_+	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase	NA|382aa|down_2|NZ_CP054575.1_273535_274681_+	PRK07671, PRK07671, bifunctional cystathionine gamma-lyase/homocysteine desulfhydrase	NA|185aa|down_3|NZ_CP054575.1_276161_276716_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|157aa|down_4|NZ_CP054575.1_276889_277360_-	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|69aa|down_5|NZ_CP054575.1_277537_277744_+	NA	NA|281aa|down_6|NZ_CP054575.1_277830_278673_-	COG0829, UreH, Urease accessory protein UreH [Posttranslational modification, protein turnover, chaperones]	NA|205aa|down_7|NZ_CP054575.1_278673_279288_-	cd05540, UreG, urease accessory protein UreG	NA|230aa|down_8|NZ_CP054575.1_279301_279991_-	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones]	NA|151aa|down_9|NZ_CP054575.1_279983_280436_-	PRK13261, ureE, urease accessory protein UreE; Provisional
GCF_013343055.1_ASM1334305v1	NZ_CP054575	Staphylococcus saprophyticus strain UTI-050 chromosome, complete genome	2	1700349-1704124	1	CRT	no	csa3	csa3,WYL,DEDDh,cas3,DinG	Type I-A	TCNGATNCACTTACTGANGCTGAGTC	26	26	45	1700423-1700444|1700423-1700444|1700471-1700516|1700543-1700570|1700543-1700570|1700543-1700570|1700543-1700570|1700543-1700570|1700597-1700618|1700645-1700672|1700699-1700720|1700825-1700870|1701257-1701302|1701329-1701374|1701401-1701452|1701401-1701452|1701401-1701452|1701479-1701554|1701677-1701776|1702565-1702610|1702637-1702682|1702889-1702910|1702889-1702910|1702991-1703036|1703063-1703114|1703063-1703114|1703063-1703114|1703285-1703306|1703333-1703384|1703411-1703432|1703411-1703432|1703531-1703576|1703603-1703624|1703603-1703624|1703735-1703756|1703735-1703756|1703837-1703882|1703909-1703960|1703909-1703960|1703909-1703960|1704071-1704098|1704071-1704098|1704071-1704098|1704071-1704098|1704071-1704098	NZ_CP054575.1_1700213-1700234|NZ_CP054575.1_1700135-1700156|NZ_CP054575.1_1700087-1700132|NZ_CP054575.1_1700027-1700054|NZ_CP054575.1_1700183-1700210|NZ_CP054575.1_1700261-1700288|NZ_CP054575.1_1700291-1700318|NZ_CP054575.1_1700321-1700348|NZ_CP054575.1_1700111-1700132|NZ_CP054575.1_1700057-1700084|NZ_CP054575.1_1700111-1700132|NZ_CP054575.1_1700111-1700156|NZ_CP054575.1_1700087-1700132|NZ_CP054575.1_1700111-1700156|NZ_CP054575.1_1700003-1700054|NZ_CP054575.1_1700159-1700210|NZ_CP054575.1_1700237-1700288|NZ_CP054575.1_1700321-1700396|NZ_CP054575.1_1700057-1700156|NZ_CP054575.1_1700111-1700156|NZ_CP054575.1_1700111-1700156|NZ_CP054575.1_1700213-1700234|NZ_CP054575.1_1700135-1700156|NZ_CP054575.1_1700111-1700156|NZ_CP054575.1_1700003-1700054|NZ_CP054575.1_1700159-1700210|NZ_CP054575.1_1700237-1700288|NZ_CP054575.1_1700135-1700156|NZ_CP054575.1_1700321-1700372|NZ_CP054575.1_1700213-1700234|NZ_CP054575.1_1700135-1700156|NZ_CP054575.1_1700087-1700132|NZ_CP054575.1_1700213-1700234|NZ_CP054575.1_1700135-1700156|NZ_CP054575.1_1700213-1700234|NZ_CP054575.1_1700135-1700156|NZ_CP054575.1_1700111-1700156|NZ_CP054575.1_1700003-1700054|NZ_CP054575.1_1700159-1700210|NZ_CP054575.1_1700237-1700288|NZ_CP054575.1_1700027-1700054|NZ_CP054575.1_1700183-1700210|NZ_CP054575.1_1700261-1700288|NZ_CP054575.1_1700291-1700318|NZ_CP054575.1_1700321-1700348	NA	50	50	Orphan	csa3,WYL,DEDDh,cas3,DinG,Cas14u_CAS-V,cas14j	NA,NA|168aa|down_0|NZ_CP054575.1_1704389_1704893_-,NA|57aa|down_2|NZ_CP054575.1_1705694_1705865_-	NA|786aa|up_9|NZ_CP054575.1_1681505_1683863_-	COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism]	csa3|105aa|up_8|NZ_CP054575.1_1684055_1684370_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|303aa|up_7|NZ_CP054575.1_1684510_1685419_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|109aa|up_6|NZ_CP054575.1_1685379_1685706_-	pfam13518, HTH_28, Helix-turn-helix domain	NA|225aa|up_5|NZ_CP054575.1_1685854_1686529_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|31aa|up_4|NZ_CP054575.1_1687976_1688069_-	pfam03904, DUF334, Domain of unknown function (DUF334)	NA|204aa|up_3|NZ_CP054575.1_1688618_1689230_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|447aa|up_2|NZ_CP054575.1_1689481_1690822_-	TIGR02919, conserved_hypothetical_protein, accessory Sec system glycosyltransferase GtfB	NA|504aa|up_1|NZ_CP054575.1_1690814_1692326_-	TIGR02918, lipopolysaccharide_biosynthesis_protein, accessory Sec system glycosylation protein GtfA	NA|398aa|up_0|NZ_CP054575.1_1698363_1699557_-	PRK12417, secY, preprotein translocase subunit SecY; Reviewed	NA|168aa|down_0|NZ_CP054575.1_1704389_1704893_-	NA	NA|215aa|down_1|NZ_CP054575.1_1704970_1705615_-	PTZ00121, PTZ00121, MAEBL; Provisional	NA|57aa|down_2|NZ_CP054575.1_1705694_1705865_-	NA	NA|225aa|down_3|NZ_CP054575.1_1706171_1706846_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|183aa|down_4|NZ_CP054575.1_1709031_1709580_-	TIGR03127, RuMP_HxlB, 6-phospho 3-hexuloisomerase	NA|211aa|down_5|NZ_CP054575.1_1709582_1710215_-	TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synthase	NA|471aa|down_6|NZ_CP054575.1_1711055_1712468_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|304aa|down_7|NZ_CP054575.1_1712592_1713504_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|214aa|down_8|NZ_CP054575.1_1718548_1719190_-	TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synthase	NA|247aa|down_9|NZ_CP054575.1_1719481_1720222_-	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
GCF_013343055.1_ASM1334305v1	NZ_CP054575	Staphylococcus saprophyticus strain UTI-050 chromosome, complete genome	3	2082406-2082514	2	CRISPRCasFinder	no		csa3,WYL,DEDDh,cas3,DinG	Orphan	ATATCAGTGTTTATAGGTGTGACCGAAATAA	31	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DEDDh,cas3,DinG,Cas14u_CAS-V,cas14j	NA|197aa|up_8|NZ_CP054575.1_2076767_2077358_-,NA|112aa|up_7|NZ_CP054575.1_2077456_2077792_-,NA|93aa|up_6|NZ_CP054575.1_2077788_2078067_-,NA|179aa|up_5|NZ_CP054575.1_2078111_2078648_-,NA|158aa|up_3|NZ_CP054575.1_2080331_2080805_-,NA|206aa|up_2|NZ_CP054575.1_2080820_2081438_-,NA|74aa|up_1|NZ_CP054575.1_2081434_2081656_-,NA|138aa|up_0|NZ_CP054575.1_2081739_2082153_-,NA|104aa|down_2|NZ_CP054575.1_2085068_2085380_-,NA|59aa|down_3|NZ_CP054575.1_2085381_2085558_-	NA|137aa|up_9|NZ_CP054575.1_2076306_2076717_-	pfam08863, YolD, YolD-like protein	NA|197aa|up_8|NZ_CP054575.1_2076767_2077358_-	NA	NA|112aa|up_7|NZ_CP054575.1_2077456_2077792_-	NA	NA|93aa|up_6|NZ_CP054575.1_2077788_2078067_-	NA	NA|179aa|up_5|NZ_CP054575.1_2078111_2078648_-	NA	NA|158aa|up_4|NZ_CP054575.1_2078688_2079162_-	COG3747, COG3747, Phage terminase, small subunit [DNA replication, recombination, and repair]	NA|158aa|up_3|NZ_CP054575.1_2080331_2080805_-	NA	NA|206aa|up_2|NZ_CP054575.1_2080820_2081438_-	NA	NA|74aa|up_1|NZ_CP054575.1_2081434_2081656_-	NA	NA|138aa|up_0|NZ_CP054575.1_2081739_2082153_-	NA	NA|507aa|down_0|NZ_CP054575.1_2082546_2084067_-	TIGR01613, putative_primase, phage/plasmid primase, P4 family, C-terminal domain	NA|296aa|down_1|NZ_CP054575.1_2084079_2084967_-	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1)	NA|104aa|down_2|NZ_CP054575.1_2085068_2085380_-	NA	NA|59aa|down_3|NZ_CP054575.1_2085381_2085558_-	NA	NA|87aa|down_4|NZ_CP054575.1_2085567_2085828_-	pfam05595, DUF771, Domain of unknown function (DUF771)	NA|214aa|down_5|NZ_CP054575.1_2085845_2086487_-	smart01040, Bro-N, BRO family, N-terminal domain	NA|54aa|down_6|NZ_CP054575.1_2086499_2086661_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|287aa|down_7|NZ_CP054575.1_2086875_2087736_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|350aa|down_8|NZ_CP054575.1_2087745_2088795_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|282aa|down_9|NZ_CP054575.1_2090020_2090866_-	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]
