The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP054575	Staphylococcus saprophyticus strain UTI-050 chromosome, complete genome	2601138	873204	889697	2601138	integrase,terminase	Staphylococcus_phage(58.82%)	23	875160:875179	891467:891486
WP_002482789.1|873204_873492_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	48.4	1.8e-13
WP_011302732.1|873554_875177_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	53.5	2.4e-155
875160:875179	attL	ATGCCAGGTATGATGTAAAA	NA	NA	NA	NA
WP_048787037.1|875244_876414_-|integrase	site-specific integrase	integrase	A0A1W6JPB2	Staphylococcus_phage	78.4	2.4e-176
WP_048787039.1|877345_877564_+	helix-turn-helix transcriptional regulator	NA	A0A2H4JB11	uncultured_Caudovirales_phage	59.7	2.7e-17
WP_048787040.1|877567_877876_+	helix-turn-helix domain-containing protein	NA	A0A1W6JPE8	Staphylococcus_phage	75.5	1.1e-35
WP_048787041.1|877872_878061_+	hypothetical protein	NA	NA	NA	NA	NA
WP_048787042.1|878062_878377_+	hypothetical protein	NA	NA	NA	NA	NA
WP_048787043.1|878477_879365_+	primase C-terminal domain-containing protein	NA	A0A1W6JQL5	Staphylococcus_phage	50.3	3.2e-77
WP_048787044.1|879378_881106_+	DUF927 domain-containing protein	NA	Q4ZE73	Staphylococcus_phage	43.4	4.0e-132
WP_104010426.1|881607_881850_+	hypothetical protein	NA	NA	NA	NA	NA
WP_048787045.1|881934_882141_+	hypothetical protein	NA	NA	NA	NA	NA
WP_048787046.1|882154_882772_+	hypothetical protein	NA	A0A1W6JPC6	Staphylococcus_phage	55.5	4.9e-56
WP_048787047.1|882783_883257_+	hypothetical protein	NA	A0A1W6JPF7	Staphylococcus_phage	43.9	3.5e-30
WP_048787048.1|884425_884899_+|terminase	phage terminase small subunit P27 family	terminase	A0A2H4JB21	uncultured_Caudovirales_phage	71.3	2.3e-53
WP_048787049.1|884939_885476_+	hypothetical protein	NA	A0A2H4JB26	uncultured_Caudovirales_phage	49.7	4.6e-42
WP_172439363.1|885472_885799_+	hypothetical protein	NA	A0A2H4JEA5	uncultured_Caudovirales_phage	45.8	1.9e-22
WP_048787050.1|885795_886131_+	hypothetical protein	NA	NA	NA	NA	NA
WP_048787051.1|886298_887267_+	Abi family protein	NA	NA	NA	NA	NA
WP_048787475.1|887368_887560_+	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	92.1	1.0e-28
WP_048787476.1|887569_887980_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	98.5	1.7e-73
WP_002455578.1|888008_888497_-	ATP-binding protein	NA	A0A2H4JFX6	uncultured_Caudovirales_phage	100.0	3.2e-87
WP_048787477.1|888679_889183_-	hypothetical protein	NA	A0A0H3U2S7	Staphylococcus_phage	67.7	1.1e-26
WP_037554460.1|889175_889697_-	hypothetical protein	NA	A0A0H3U494	Staphylococcus_phage	83.2	1.0e-83
891467:891486	attR	ATGCCAGGTATGATGTAAAA	NA	NA	NA	NA
>prophage 2
NZ_CP054575	Staphylococcus saprophyticus strain UTI-050 chromosome, complete genome	2601138	1014619	1037039	2601138	plate,holin	Staphylococcus_phage(80.0%)	25	NA	NA
WP_069794611.1|1014619_1015792_+|plate	BppU family phage baseplate upper protein	plate	A0A2H4JG05	uncultured_Caudovirales_phage	41.6	1.4e-83
WP_069794614.1|1015807_1016446_+	poly-gamma-glutamate hydrolase family protein	NA	W5R8K6	Staphylococcus_phage	48.7	2.4e-50
WP_069794616.1|1016482_1016905_+	hypothetical protein	NA	A0A2H4JID2	uncultured_Caudovirales_phage	77.1	2.5e-59
WP_069794618.1|1016891_1017290_+	hypothetical protein	NA	A0A2H4JCM1	uncultured_Caudovirales_phage	87.1	5.7e-58
WP_069794620.1|1017331_1017805_+|holin	phage holin	holin	U3PJ27	Staphylococcus_phage	73.9	2.2e-56
WP_069825649.1|1017794_1019219_+	SH3 domain-containing protein	NA	U3PDY3	Staphylococcus_phage	99.6	2.9e-269
WP_069794625.1|1019422_1019833_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	93.4	1.0e-70
WP_069794627.1|1019949_1021749_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_041784790.1|1022811_1024194_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	61.3	5.3e-167
WP_011302825.1|1024213_1025218_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	49.4	2.9e-90
WP_011302826.1|1025207_1025459_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	81.1	4.2e-30
WP_011302827.1|1025518_1025995_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	53.5	4.8e-43
WP_011302828.1|1025978_1026770_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	71.8	6.4e-101
WP_011302829.1|1026865_1028455_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	81.8	8.5e-262
WP_011302830.1|1028843_1030040_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	86.6	1.8e-195
WP_011302831.1|1030138_1031047_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	75.8	1.1e-101
WP_011302832.1|1031216_1032053_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	68.2	4.2e-111
WP_047504130.1|1032323_1032680_-	CrcB family protein	NA	NA	NA	NA	NA
WP_011302834.1|1032676_1033042_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	62.8	3.3e-36
WP_011302835.1|1033252_1033558_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011302836.1|1033842_1034556_+	transaldolase	NA	E3SKN5	Synechococcus_phage	36.3	2.9e-20
WP_174605051.1|1035090_1035573_+	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
WP_011302838.1|1035672_1036122_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	47.5	1.3e-21
WP_011302839.1|1036129_1036555_-	competence protein ComK	NA	NA	NA	NA	NA
WP_069794629.1|1036568_1037039_-	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	44.4	1.7e-24
>prophage 3
NZ_CP054575	Staphylococcus saprophyticus strain UTI-050 chromosome, complete genome	2601138	1041486	1058572	2601138	tRNA	Staphylococcus_phage(100.0%)	15	NA	NA
WP_011302847.1|1041486_1042953_+	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	58.6	5.5e-13
WP_011302848.1|1043494_1044538_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	64.4	1.0e-130
WP_011302849.1|1044544_1045177_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	64.8	5.0e-72
WP_011302850.1|1045188_1046370_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	71.2	4.2e-165
WP_002482978.1|1046383_1046842_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	76.3	6.6e-58
WP_174604983.1|1047036_1048107_-	proline dehydrogenase family protein	NA	A0A2H4PQT6	Staphylococcus_phage	70.4	3.9e-125
WP_069794635.1|1048373_1049198_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_011302853.1|1049433_1050390_+	L-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_002482982.1|1050541_1050943_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011302854.1|1051061_1051622_-	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	63.8	9.5e-67
WP_011302855.1|1051618_1052572_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	83.3	7.3e-67
WP_011302856.1|1052681_1053851_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	77.4	2.0e-167
WP_011302857.1|1054378_1056793_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	85.6	0.0e+00
WP_002482987.1|1056811_1057123_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	68.9	4.5e-34
WP_011302858.1|1057303_1058572_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	77.2	1.5e-38
>prophage 4
NZ_CP054575	Staphylococcus saprophyticus strain UTI-050 chromosome, complete genome	2601138	1180261	1189387	2601138	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_002483095.1|1180261_1181266_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.9	1.7e-05
WP_011302949.1|1181268_1182294_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_011302950.1|1182314_1183460_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	45.0	2.5e-85
WP_011302951.1|1183475_1183736_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	44.1	7.4e-06
WP_011302952.1|1184118_1186395_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	34.6	1.7e-29
WP_011302953.1|1186576_1188856_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.4	3.8e-69
WP_002483102.1|1188868_1189387_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.2	6.6e-30
>prophage 5
NZ_CP054575	Staphylococcus saprophyticus strain UTI-050 chromosome, complete genome	2601138	1315686	1325654	2601138		uncultured_Mediterranean_phage(28.57%)	11	NA	NA
WP_002483230.1|1315686_1316574_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	31.4	5.1e-38
WP_174604986.1|1316654_1317149_-	DUF309 domain-containing protein	NA	NA	NA	NA	NA
WP_011303059.1|1317240_1317975_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	23.5	1.4e-09
WP_002483233.1|1317958_1318507_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	31.4	2.1e-10
WP_069794687.1|1318499_1319237_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_011303060.1|1319363_1320089_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	42.6	1.1e-46
WP_174605053.1|1320069_1321836_+	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	23.8	1.7e-21
WP_069794689.1|1322263_1322809_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_002483238.1|1322964_1323213_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	4.9e-15
WP_011303062.1|1323322_1324282_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_069794691.1|1324274_1325654_+	ATP-dependent DNA helicase RecQ	NA	M1PGQ0	Moumouvirus	32.4	7.1e-55
>prophage 6
NZ_CP054575	Staphylococcus saprophyticus strain UTI-050 chromosome, complete genome	2601138	1851808	1903118	2601138	portal,integrase,tail,plate,terminase,capsid,protease,head	Staphylococcus_phage(62.71%)	72	1851114:1851133	1894260:1894279
1851114:1851133	attL	TTACGGAAACGGAGGGATTC	NA	NA	NA	NA
WP_174605001.1|1851808_1852219_-	YolD-like family protein	NA	A0A2H4JEH6	uncultured_Caudovirales_phage	80.1	1.8e-59
WP_174605054.1|1852318_1852579_-	hypothetical protein	NA	A0A1J0MFV7	Staphylococcus_phage	53.8	2.3e-15
WP_174605002.1|1852700_1853012_-	DUF3467 domain-containing protein	NA	Q4ZCY9	Staphylococcus_virus	66.7	6.1e-31
WP_174605003.1|1853284_1855015_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6JQL2	Staphylococcus_phage	72.3	1.5e-259
WP_069795294.1|1855011_1855317_-	hypothetical protein	NA	A0A0D4DCQ8	Staphylococcus_phage	75.5	2.7e-31
WP_174605004.1|1855367_1855586_-	hypothetical protein	NA	NA	NA	NA	NA
WP_174605005.1|1855587_1856292_-	hypothetical protein	NA	NA	NA	NA	NA
WP_174605055.1|1856295_1856775_-|plate	BppU family phage baseplate upper protein	plate	A0A1D6Z279	Staphylococcus_phage	57.7	4.5e-17
WP_174605006.1|1857052_1857451_-	hypothetical protein	NA	A0A2H4JCM1	uncultured_Caudovirales_phage	87.9	2.6e-58
WP_174605007.1|1857437_1857860_-	hypothetical protein	NA	A0A2H4JID2	uncultured_Caudovirales_phage	77.9	4.2e-59
WP_174605008.1|1857914_1859822_-	glucosaminidase domain-containing protein	NA	H9A0P7	Staphylococcus_phage	64.2	4.2e-215
WP_174605009.1|1859881_1860505_-	poly-gamma-glutamate hydrolase family protein	NA	H9A132	Staphylococcus_phage	62.4	1.7e-64
WP_174605010.1|1860518_1861862_-|plate	BppU family phage baseplate upper protein	plate	H9A0P5	Staphylococcus_phage	52.8	3.4e-118
WP_174605011.1|1861874_1863743_-	DUF2817 domain-containing protein	NA	H9A0P4	Staphylococcus_phage	67.6	4.1e-255
WP_174605012.1|1863742_1865206_-	hypothetical protein	NA	A0A1W6JNL7	Staphylococcus_phage	44.8	8.2e-102
WP_145461869.1|1865214_1866162_-|tail	phage tail family protein	tail	A0A1W6JNU3	Staphylococcus_phage	58.0	4.1e-102
WP_174605013.1|1866173_1869944_-|tail	phage tail protein	tail	H9A0W0	Staphylococcus_phage	70.6	7.2e-142
WP_129334834.1|1869961_1870306_-	hypothetical protein	NA	A0A1W6JNR9	Staphylococcus_phage	66.7	3.1e-36
WP_129334833.1|1870347_1870713_-|tail	phage tail protein	tail	H9A0V8	Staphylococcus_phage	75.2	4.6e-46
WP_174605014.1|1870780_1871329_-|tail	phage major tail protein, TP901-1 family	tail	H9A0V7	Staphylococcus_phage	65.4	3.6e-42
WP_174605015.1|1871388_1871778_-	hypothetical protein	NA	A0A1W6JNQ3	Staphylococcus_phage	63.6	9.6e-42
WP_174605016.1|1871789_1872137_-	HK97 gp10 family phage protein	NA	A0A2H4J1L1	uncultured_Caudovirales_phage	80.4	7.5e-46
WP_174605017.1|1872136_1872439_-	hypothetical protein	NA	A0A1W6JNQ9	Staphylococcus_phage	65.0	2.1e-28
WP_174605018.1|1872435_1872771_-|head,tail	phage head-tail connector protein	head,tail	A0A1W6JNH7	Staphylococcus_phage	64.8	1.3e-31
WP_129334828.1|1872772_1873042_-	hypothetical protein	NA	A0A2H4J5B2	uncultured_Caudovirales_phage	60.7	1.7e-21
WP_174605019.1|1873057_1873969_-|capsid	phage major capsid protein	capsid	A0A1W6JNT3	Staphylococcus_phage	83.6	6.4e-145
WP_145461874.1|1873985_1874615_-	DUF4355 domain-containing protein	NA	A0A1W6JNL4	Staphylococcus_phage	60.5	4.9e-19
WP_174605020.1|1874862_1875003_-	hypothetical protein	NA	NA	NA	NA	NA
WP_145461882.1|1875015_1875978_-|capsid	minor capsid protein	capsid	A0A2H4IYR8	uncultured_Caudovirales_phage	71.8	4.5e-125
WP_174605021.1|1875984_1877520_-|portal	phage portal protein	portal	A0A1W6JNG9	Staphylococcus_phage	66.7	3.1e-200
WP_069796326.1|1877531_1878812_-|terminase	PBSX family phage terminase large subunit	terminase	S4V685	Staphylococcus_phage	81.5	1.7e-207
WP_069796327.1|1878792_1879227_-	HNH endonuclease	NA	A5GYP7	Lactococcus_phage	46.1	2.7e-21
WP_069796328.1|1879401_1879842_-	transcriptional regulator	NA	A7TWI7	Staphylococcus_phage	65.8	1.9e-49
WP_141709937.1|1879957_1880089_-	transcriptional regulator	NA	U3PG58	Staphylococcus_phage	93.0	7.0e-13
WP_069796329.1|1880106_1880322_-	DUF1381 domain-containing protein	NA	U3PD04	Staphylococcus_phage	78.6	4.7e-22
WP_069796330.1|1880525_1881047_-	dUTP pyrophosphatase	NA	A0A2H4JCC3	uncultured_Caudovirales_phage	77.2	1.5e-66
WP_069796331.1|1881039_1881288_-	hypothetical protein	NA	A0A2H4JHN5	uncultured_Caudovirales_phage	92.3	1.4e-14
WP_069796332.1|1881277_1881583_-	hypothetical protein	NA	A0A2H4JB57	uncultured_Caudovirales_phage	64.8	5.8e-10
WP_069796333.1|1881678_1882191_-	hypothetical protein	NA	A0A2H4J4E7	uncultured_Caudovirales_phage	64.2	1.8e-19
WP_061050558.1|1882205_1882481_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061050557.1|1882495_1882705_-	hypothetical protein	NA	A0A2H4J6Y0	uncultured_Caudovirales_phage	53.6	1.5e-09
WP_061050556.1|1882710_1882896_-	Lar family restriction alleviation protein	NA	A0A2R3ZXL0	Staphylococcus_phage	78.7	4.3e-24
WP_069973593.1|1883096_1883402_-	DUF1140 family protein	NA	A0A2H4JAZ4	uncultured_Caudovirales_phage	98.0	1.1e-48
WP_174605056.1|1883402_1883756_-	DUF3310 domain-containing protein	NA	A0A2H4JE87	uncultured_Caudovirales_phage	88.0	5.1e-58
WP_069796335.1|1884094_1884472_-	hypothetical protein	NA	A0A2H4J2U6	uncultured_Caudovirales_phage	100.0	1.1e-63
WP_069796336.1|1884485_1884689_-	hypothetical protein	NA	A0A2H4JC77	uncultured_Caudovirales_phage	97.0	5.4e-28
WP_069796337.1|1884648_1885092_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A2H4J5E6	uncultured_Caudovirales_phage	66.1	3.4e-43
WP_069796338.1|1885102_1885324_-	DUF3269 family protein	NA	A0A2H4J2U2	uncultured_Caudovirales_phage	76.8	6.0e-25
WP_069796339.1|1885482_1886268_-	ATP-binding protein	NA	A0A1W6JPS4	Staphylococcus_phage	72.4	1.4e-108
WP_069796340.1|1886279_1887068_-	phage replisome organizer N-terminal domain-containing protein	NA	D2JGK4	Staphylococcus_phage	83.2	7.2e-52
WP_069796341.1|1887039_1887306_-	helix-turn-helix transcriptional regulator	NA	A0A1W6JNL6	Staphylococcus_phage	44.7	7.6e-14
WP_174605022.1|1887302_1887971_-	hypothetical protein	NA	U3PDZ6	Staphylococcus_phage	82.8	8.6e-107
WP_145441193.1|1887984_1888425_-	single-stranded DNA-binding protein	NA	U3PJ41	Staphylococcus_phage	87.7	1.7e-63
WP_145441195.1|1888421_1889066_-	ERF family protein	NA	D2JGK1	Staphylococcus_phage	56.6	3.9e-56
WP_145441197.1|1889066_1889558_-	siphovirus Gp157 family protein	NA	A0A1J0MFN6	Staphylococcus_phage	58.3	2.7e-41
WP_174605023.1|1889634_1889793_-	hypothetical protein	NA	A0A2H4J9L2	uncultured_Caudovirales_phage	80.0	3.1e-15
WP_174605024.1|1889794_1890001_-	hypothetical protein	NA	NA	NA	NA	NA
WP_174605025.1|1890013_1890223_-	DUF771 domain-containing protein	NA	B7T098	Staphylococcus_virus	60.9	5.7e-17
WP_174605026.1|1890212_1890791_-	hypothetical protein	NA	NA	NA	NA	NA
WP_174605027.1|1890826_1891045_-	helix-turn-helix transcriptional regulator	NA	A0A1W6JQ34	Staphylococcus_phage	80.6	1.1e-26
WP_174605028.1|1891206_1891524_+	helix-turn-helix transcriptional regulator	NA	A0A1W6JQ26	Staphylococcus_phage	63.1	1.5e-29
WP_174605057.1|1891528_1892014_+	ImmA/IrrE family metallo-endopeptidase	NA	H9A0K3	Staphylococcus_phage	52.0	7.3e-39
WP_174605029.1|1892010_1892988_+	DUF5067 domain-containing protein	NA	H9A0K2	Staphylococcus_phage	63.9	6.8e-60
WP_174605030.1|1893046_1894120_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1J0MFS3	Staphylococcus_phage	67.6	2.9e-136
WP_011303464.1|1894581_1895148_-	competence protein ComK	NA	NA	NA	NA	NA
1894260:1894279	attR	TTACGGAAACGGAGGGATTC	NA	NA	NA	NA
WP_011303465.1|1895399_1895618_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_002483734.1|1895699_1896689_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_002483735.1|1896889_1897075_+	DUF2187 family protein	NA	NA	NA	NA	NA
WP_002483736.1|1897080_1897683_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_011303467.1|1898273_1899782_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_011303468.1|1899947_1901306_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_011303469.1|1901324_1903118_-|protease	serine protease	protease	W5SAB9	Pithovirus	26.6	3.8e-08
>prophage 7
NZ_CP054575	Staphylococcus saprophyticus strain UTI-050 chromosome, complete genome	2601138	2042478	2052342	2601138	terminase	uncultured_Caudovirales_phage(44.44%)	13	NA	NA
WP_069794941.1|2042478_2042898_-	FosB/FosD family fosfomycin resistance bacillithiol transferase	NA	Q2LI91	Bacillus_phage	63.2	1.2e-37
WP_112368858.1|2043188_2043551_+	glyoxalase	NA	NA	NA	NA	NA
WP_069794939.1|2043612_2044023_-	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	69.1	3.1e-51
WP_041079981.1|2044137_2044869_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(44)v	NA	E4ZFQ0	Streptococcus_phage	49.4	4.1e-62
WP_174605032.1|2044945_2045278_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_069794509.1|2045274_2045553_-	hypothetical protein	NA	A0A2H4JEA5	uncultured_Caudovirales_phage	46.7	1.8e-18
WP_041079931.1|2045597_2046134_-	hypothetical protein	NA	A0A2H4JB26	uncultured_Caudovirales_phage	50.8	2.4e-43
WP_041079930.1|2046159_2046633_-|terminase	phage terminase small subunit P27 family	terminase	A0A2H4JB21	uncultured_Caudovirales_phage	72.6	3.7e-56
WP_174605033.1|2047755_2048229_-	hypothetical protein	NA	A0A1W6JPF7	Staphylococcus_phage	40.1	1.3e-29
WP_145460672.1|2048244_2048862_-	M3 family metallopeptidase	NA	A0A1W6JPC6	Staphylococcus_phage	51.7	8.9e-50
WP_174605058.1|2048876_2049083_-	hypothetical protein	NA	NA	NA	NA	NA
WP_174605034.1|2049168_2049582_-	hypothetical protein	NA	NA	NA	NA	NA
WP_174605035.1|2049999_2052342_-	DNA primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	37.3	1.1e-119
>prophage 8
NZ_CP054575	Staphylococcus saprophyticus strain UTI-050 chromosome, complete genome	2601138	2072276	2088795	2601138	integrase,terminase	Staphylococcus_phage(53.33%)	24	2073074:2073095	2088914:2088935
WP_002483889.1|2072276_2072861_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	55.8	3.7e-53
2073074:2073095	attL	CCCTTCGAGGGGACTAATAAGT	NA	NA	NA	NA
WP_069803760.1|2073265_2074105_-	aminoglycoside 6-adenylyltransferase	NA	A0A1X9I6F2	Streptococcus_phage	41.0	3.1e-53
WP_069825611.1|2074448_2074991_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_069825612.1|2075001_2075421_-	FosB/FosD family fosfomycin resistance bacillithiol transferase	NA	Q2LI91	Bacillus_phage	63.3	2.4e-38
WP_069825613.1|2075657_2076245_+	hypothetical protein	NA	A0A1D6Z277	Staphylococcus_phage	68.4	1.4e-12
WP_069825614.1|2076306_2076717_-	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	87.5	2.9e-65
WP_069825615.1|2076767_2077358_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064783228.1|2077456_2077792_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069820004.1|2077788_2078067_-	hypothetical protein	NA	A0A2H4JEA5	uncultured_Caudovirales_phage	51.1	1.6e-19
WP_174605040.1|2078111_2078648_-	pathogenicity island protein	NA	A0A2H4JB26	uncultured_Caudovirales_phage	49.2	7.8e-42
WP_064783232.1|2078688_2079162_-|terminase	phage terminase small subunit P27 family	terminase	A0A2H4JB21	uncultured_Caudovirales_phage	72.0	1.3e-53
WP_145441222.1|2080331_2080805_-	hypothetical protein	NA	A0A1W6JPF7	Staphylococcus_phage	40.8	8.7e-29
WP_069825632.1|2080820_2081438_-	hypothetical protein	NA	A0A1W6JPC6	Staphylococcus_phage	52.7	3.6e-51
WP_081325549.1|2081434_2081656_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081325548.1|2081739_2082153_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069825630.1|2082546_2084067_-	nucleoside triphosphatase	NA	A0A1P8BMT9	Lactococcus_phage	44.8	9.1e-104
WP_069803851.1|2084079_2084967_-	primase C-terminal domain-containing protein	NA	A0A1W6JQL5	Staphylococcus_phage	50.2	9.4e-77
WP_069825629.1|2085068_2085380_-	hypothetical protein	NA	NA	NA	NA	NA
WP_174605041.1|2085381_2085558_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069803855.1|2085567_2085828_-	DUF771 domain-containing protein	NA	NA	NA	NA	NA
WP_069819948.1|2085845_2086487_-	Bro-N domain-containing protein	NA	A0A1W6JPC3	Staphylococcus_phage	54.2	6.0e-57
WP_174605042.1|2086499_2086661_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_069825628.1|2086875_2087736_+	helix-turn-helix transcriptional regulator	NA	Q4ZE79	Staphylococcus_phage	30.2	3.7e-09
WP_069803862.1|2087745_2088795_+|integrase	site-specific integrase	integrase	U3PJ31	Staphylococcus_phage	39.9	5.6e-68
2088914:2088935	attR	CCCTTCGAGGGGACTAATAAGT	NA	NA	NA	NA
>prophage 9
NZ_CP054575	Staphylococcus saprophyticus strain UTI-050 chromosome, complete genome	2601138	2129874	2148604	2601138		uncultured_Caudovirales_phage(33.33%)	14	NA	NA
WP_011303647.1|2129874_2130843_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.3	2.6e-136
WP_002483928.1|2131256_2132225_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	94.4	2.2e-175
WP_047502731.1|2132348_2134454_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	90.0	0.0e+00
WP_002483930.1|2134416_2134815_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	76.5	8.6e-54
WP_011303649.1|2135541_2136429_+	DMT family transporter	NA	NA	NA	NA	NA
WP_002483932.1|2136442_2136943_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	72.3	2.0e-52
WP_011303650.1|2137125_2138640_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	35.8	9.5e-69
WP_011303651.1|2139010_2140516_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	6.3e-65
WP_011303653.1|2140985_2141933_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	23.6	1.5e-11
WP_002483937.1|2142103_2142652_-	5'-3'-deoxyribonucleotidase	NA	A0A0A0PKY7	Bacillus_phage	39.0	2.0e-29
WP_011303654.1|2142829_2143885_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	27.2	2.3e-21
WP_002483939.1|2144043_2145561_-	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA	NA
WP_011303655.1|2145557_2146520_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.5	4.8e-26
WP_011303656.1|2146825_2148604_-	DNA helicase RecQ	NA	M1PGQ0	Moumouvirus	36.8	5.9e-78
>prophage 10
NZ_CP054575	Staphylococcus saprophyticus strain UTI-050 chromosome, complete genome	2601138	2156907	2164457	2601138		Pandoravirus(16.67%)	9	NA	NA
WP_011303663.1|2156907_2158050_-	aminodeoxychorismate synthase component I	NA	S4VNU7	Pandoravirus	36.7	5.4e-24
WP_011303664.1|2158033_2158627_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	41.5	1.9e-36
WP_002483950.1|2158882_2159554_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	54.9	1.2e-63
WP_011303665.1|2159555_2159981_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_002483952.1|2159973_2160690_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.4	2.5e-51
WP_011303666.1|2160930_2161524_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002483954.1|2161592_2161844_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_011303667.1|2162061_2163123_-	glycosyltransferase family 2 protein	NA	A0A192Y8W7	Salmonella_phage	42.3	8.7e-61
WP_002483956.1|2163617_2164457_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	40.2	1.2e-52
