The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP054491	Candidatus Reidiella endopervernicosa isolate Santa_Monica_outfall chromosome, complete genome	3446950	150991	160353	3446950	tRNA	Bacillus_phage(33.33%)	10	NA	NA
WP_135622274.1|150991_152287_-	phosphate regulon sensor histidine kinase PhoR	NA	W8CYF6	Bacillus_phage	33.8	1.5e-30
WP_078484047.1|152338_153031_-	phosphate regulon transcriptional regulator PhoB	NA	W8CYM9	Bacillus_phage	37.5	1.9e-32
WP_078484046.1|153120_153615_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_078484045.1|153616_153973_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_078484044.1|154077_154677_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_078484043.1|154673_155687_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	56.9	2.7e-104
WP_078484042.1|155837_156056_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_078484041.1|156083_156542_+	GatB/YqeY domain-containing protein	NA	A0A292GL36	Xanthomonas_phage	44.0	6.9e-23
WP_078484040.1|156638_158417_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	37.2	1.5e-73
WP_078484039.1|158511_160353_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.1	1.1e-34
>prophage 2
NZ_CP054491	Candidatus Reidiella endopervernicosa isolate Santa_Monica_outfall chromosome, complete genome	3446950	359899	367999	3446950		Hokovirus(16.67%)	11	NA	NA
WP_078484823.1|359899_361090_-	hypothetical protein	NA	A0A1V0SGX0	Hokovirus	36.6	3.5e-26
WP_174672610.1|361257_361575_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_174672611.1|361599_362139_-	GGDEF domain-containing protein	NA	G3MA91	Bacillus_virus	41.3	2.0e-05
WP_078484826.1|362265_362946_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078484827.1|363167_363497_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078484828.1|363611_363947_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078484829.1|363983_364619_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	42.9	1.3e-27
WP_078484830.1|364787_365666_+	bile acid:sodium symporter family protein	NA	NA	NA	NA	NA
WP_078484831.1|365688_366162_+	NADAR family protein	NA	A0A1L3KHN2	Beihai_sipunculid_worm_virus	30.1	7.7e-09
WP_078484832.1|366295_366499_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	73.0	3.5e-19
WP_078484833.1|366724_367999_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	A0A0B5JD48	Pandoravirus	26.4	1.8e-12
>prophage 3
NZ_CP054491	Candidatus Reidiella endopervernicosa isolate Santa_Monica_outfall chromosome, complete genome	3446950	1278502	1289222	3446950	tRNA	Enterobacteria_phage(42.86%)	9	NA	NA
WP_078483978.1|1278502_1281340_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	54.8	1.2e-306
WP_078483979.1|1281408_1282803_+	MFS transporter	NA	NA	NA	NA	NA
WP_078483980.1|1282878_1283352_+	single-stranded DNA-binding protein	NA	A0A0A0P1Q9	Enterobacteria_phage	67.5	1.4e-39
WP_078483209.1|1283384_1284458_+	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	47.3	3.5e-86
WP_078483208.1|1284454_1285333_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	57.6	1.3e-94
WP_078483207.1|1285329_1285893_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	53.6	2.6e-48
WP_078483206.1|1285901_1286795_+	dTDP-4-dehydrorhamnose reductase	NA	A0A1D7XFA3	Escherichia_phage	34.0	3.4e-26
WP_078483205.1|1286855_1288202_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_078483204.1|1288226_1289222_+	PhoH family protein	NA	W8D063	Erwinia_phage	43.4	2.6e-43
>prophage 4
NZ_CP054491	Candidatus Reidiella endopervernicosa isolate Santa_Monica_outfall chromosome, complete genome	3446950	1753056	1803751	3446950	tRNA,transposase,integrase	Shigella_phage(33.33%)	60	1752879:1752893	1804915:1804929
1752879:1752893	attL	TAAAGGCGTACTTCA	NA	NA	NA	NA
WP_174672767.1|1753056_1753365_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_174673740.1|1753540_1753768_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_174673085.1|1753764_1754220_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	52.4	1.4e-36
WP_078485066.1|1754225_1754672_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_078485065.1|1754763_1756899_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_174673086.1|1757027_1757258_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078485064.1|1757342_1757591_+	hypothetical protein	NA	NA	NA	NA	NA
WP_174673087.1|1757781_1758102_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078485067.1|1758145_1758826_+	type 1 glutamine amidotransferase domain-containing protein	NA	NA	NA	NA	NA
WP_174673088.1|1758867_1759476_-	hypothetical protein	NA	NA	NA	NA	NA
WP_174673089.1|1759590_1759812_-	hypothetical protein	NA	NA	NA	NA	NA
WP_174673090.1|1759772_1760099_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078485062.1|1760309_1760657_+	metalloregulator ArsR/SmtB family transcription factor	NA	A0A2H4J145	uncultured_Caudovirales_phage	52.4	4.6e-19
WP_174673741.1|1760723_1761755_+	ACR3 family arsenite efflux transporter	NA	NA	NA	NA	NA
WP_078485061.1|1761805_1762720_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_078485060.1|1762794_1763796_+	ArsJ-associated glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_078485059.1|1763798_1765019_+	organoarsenical effux MFS transporter ArsJ	NA	NA	NA	NA	NA
WP_174673091.1|1765027_1765498_+	hypothetical protein	NA	NA	NA	NA	NA
WP_174673092.1|1765440_1765935_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_078485172.1|1766219_1766822_+	hypothetical protein	NA	NA	NA	NA	NA
WP_078485171.1|1767037_1767586_+	HPP family protein	NA	NA	NA	NA	NA
WP_174673093.1|1767572_1769063_-	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_174673094.1|1769168_1769306_-	hypothetical protein	NA	NA	NA	NA	NA
WP_174673095.1|1769263_1770202_-	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_078485199.1|1770567_1771536_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	38.0	1.1e-17
WP_078485200.1|1771545_1771929_+	hypothetical protein	NA	NA	NA	NA	NA
WP_078485201.1|1771978_1772362_+	YkgJ family cysteine cluster protein	NA	NA	NA	NA	NA
WP_078484982.1|1772722_1773139_+	ester cyclase	NA	NA	NA	NA	NA
WP_078484981.1|1773207_1774539_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_078484980.1|1774541_1777505_-	GHKL domain-containing protein	NA	NA	NA	NA	NA
WP_078484979.1|1777494_1777695_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078484978.1|1777811_1779503_+	ABC-ATPase domain-containing protein	NA	NA	NA	NA	NA
WP_078484977.1|1779669_1780011_+	hypothetical protein	NA	NA	NA	NA	NA
WP_174673096.1|1779940_1780372_-	hypothetical protein	NA	NA	NA	NA	NA
WP_174673097.1|1780469_1780664_-	hypothetical protein	NA	NA	NA	NA	NA
WP_174673098.1|1783023_1783932_-|tRNA	tRNA glutamyl-Q(34) synthetase GluQRS	tRNA	NA	NA	NA	NA
WP_078484701.1|1783949_1784627_-	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	33.5	1.0e-30
WP_078484700.1|1784722_1785082_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_078484698.1|1785523_1786285_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_078484697.1|1786274_1787468_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_078484696.1|1787645_1788617_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_174673099.1|1789521_1790319_+	MinD/ParA family protein	NA	NA	NA	NA	NA
WP_078484693.1|1790448_1790682_+	hypothetical protein	NA	NA	NA	NA	NA
WP_174673100.1|1790849_1791734_+	radical SAM protein	NA	NA	NA	NA	NA
WP_174673101.1|1791746_1791938_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_174673742.1|1791922_1792630_-	GGDEF domain-containing protein	NA	G3MA91	Bacillus_virus	42.9	1.1e-16
WP_174673102.1|1793268_1793937_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_174673103.1|1794360_1794759_-	hypothetical protein	NA	NA	NA	NA	NA
WP_174673104.1|1797230_1797470_+	hypothetical protein	NA	NA	NA	NA	NA
WP_174673105.1|1797418_1798177_+	DUF560 domain-containing protein	NA	NA	NA	NA	NA
WP_174673106.1|1798738_1799116_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_174673107.1|1799232_1799631_+	CHASE2 domain-containing protein	NA	NA	NA	NA	NA
WP_174673108.1|1799648_1799816_+	hypothetical protein	NA	NA	NA	NA	NA
WP_174673109.1|1799845_1800682_+	CHASE2 domain-containing protein	NA	NA	NA	NA	NA
WP_174673110.1|1800681_1801386_+	adenylate/guanylate cyclase domain-containing protein	NA	NA	NA	NA	NA
WP_174673111.1|1802104_1802527_-	hypothetical protein	NA	NA	NA	NA	NA
WP_174673112.1|1802478_1802703_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_174673743.1|1803020_1803140_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_174673113.1|1803265_1803499_-	hypothetical protein	NA	NA	NA	NA	NA
WP_174673114.1|1803550_1803751_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	U5P429	Shigella_phage	39.0	2.0e-06
1804915:1804929	attR	TGAAGTACGCCTTTA	NA	NA	NA	NA
>prophage 5
NZ_CP054491	Candidatus Reidiella endopervernicosa isolate Santa_Monica_outfall chromosome, complete genome	3446950	2741168	2751286	3446950		Staphylococcus_phage(50.0%)	7	NA	NA
WP_078484713.1|2741168_2741645_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	45.0	1.6e-30
WP_078484712.1|2741698_2742817_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	38.4	2.5e-66
WP_078484711.1|2742845_2743514_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	34.1	7.5e-26
WP_078484729.1|2743529_2744612_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	35.2	6.6e-48
WP_078484710.1|2744638_2745145_-	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_078484709.1|2745172_2746426_-	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	50.5	6.4e-95
WP_078484708.1|2747110_2751286_-	response regulator	NA	A0A1V0SGX0	Hokovirus	30.6	2.2e-54
