The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP054440	Staphylococcus saprophyticus strain UTI-058y chromosome, complete genome	2550339	895408	911123	2550339	integrase,terminase	Staphylococcus_phage(66.67%)	25	897364:897383	912893:912912
WP_002482789.1|895408_895696_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	48.4	1.8e-13
WP_047503246.1|895758_897381_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	53.4	5.4e-155
897364:897383	attL	ATGCCAGGTATGATGTAAAA	NA	NA	NA	NA
WP_115338437.1|897492_898662_-|integrase	site-specific integrase	integrase	A0A1W6JPB2	Staphylococcus_phage	79.2	9.6e-178
WP_174543086.1|898662_899505_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_103301597.1|899648_899864_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_174543088.1|899878_900181_+	helix-turn-helix domain-containing protein	NA	A0A1W6JPE8	Staphylococcus_phage	81.7	2.1e-36
WP_174543090.1|900177_900354_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064205791.1|900358_900706_+	hypothetical protein	NA	A0A1W6JPD3	Staphylococcus_phage	40.0	4.9e-13
WP_174543092.1|900707_901016_+	hypothetical protein	NA	NA	NA	NA	NA
WP_174543094.1|901075_902692_+	phage resistance protein	NA	A0A1W6JPF4	Staphylococcus_phage	72.0	2.9e-225
WP_174543096.1|902858_903662_+	DNA primase	NA	A0A1W6JPC1	Staphylococcus_phage	77.7	1.8e-122
WP_064783239.1|903648_903933_+	hypothetical protein	NA	Q4ZE68	Staphylococcus_phage	63.3	1.3e-27
WP_145461619.1|903929_904343_+	hypothetical protein	NA	NA	NA	NA	NA
WP_145461620.1|904428_904635_+	hypothetical protein	NA	NA	NA	NA	NA
WP_174543098.1|904648_905266_+	hypothetical protein	NA	A0A1W6JPC6	Staphylococcus_phage	48.5	1.1e-44
WP_174543100.1|905277_905751_+	hypothetical protein	NA	A0A1W6JPF7	Staphylococcus_phage	41.4	6.7e-29
WP_064783232.1|906912_907386_+|terminase	phage terminase small subunit P27 family	terminase	A0A2H4JB21	uncultured_Caudovirales_phage	72.0	1.3e-53
WP_064783230.1|907426_907963_+	hypothetical protein	NA	A0A2H4JB26	uncultured_Caudovirales_phage	49.7	7.8e-42
WP_065581084.1|908007_908286_+	hypothetical protein	NA	A0A2H4JEA5	uncultured_Caudovirales_phage	52.2	7.4e-20
WP_064783228.1|908282_908618_+	hypothetical protein	NA	NA	NA	NA	NA
WP_174543102.1|908794_908986_+	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	90.5	5.0e-28
WP_048787476.1|908995_909406_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	98.5	1.7e-73
WP_002455578.1|909434_909923_-	ATP-binding protein	NA	A0A2H4JFX6	uncultured_Caudovirales_phage	100.0	3.2e-87
WP_048787477.1|910105_910609_-	hypothetical protein	NA	A0A0H3U2S7	Staphylococcus_phage	67.7	1.1e-26
WP_037554460.1|910601_911123_-	hypothetical protein	NA	A0A0H3U494	Staphylococcus_phage	83.2	1.0e-83
912893:912912	attR	ATGCCAGGTATGATGTAAAA	NA	NA	NA	NA
>prophage 2
NZ_CP054440	Staphylococcus saprophyticus strain UTI-058y chromosome, complete genome	2550339	1034439	1048665	2550339		Staphylococcus_phage(92.31%)	16	NA	NA
WP_041784790.1|1034439_1035822_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	61.3	5.3e-167
WP_061050592.1|1035841_1036846_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	49.4	2.9e-90
WP_011302826.1|1036835_1037087_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	81.1	4.2e-30
WP_011302827.1|1037146_1037623_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	53.5	4.8e-43
WP_172439364.1|1037606_1038398_+	prolyl oligopeptidase family serine peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	71.4	4.2e-100
WP_011302829.1|1038493_1040083_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	81.8	8.5e-262
WP_011302830.1|1040471_1041668_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	86.6	1.8e-195
WP_011302831.1|1041766_1042675_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	75.8	1.1e-101
WP_061050593.1|1042844_1043681_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	68.2	7.2e-111
WP_047504130.1|1043951_1044308_-	CrcB family protein	NA	NA	NA	NA	NA
WP_011302834.1|1044304_1044670_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	62.8	3.3e-36
WP_174543112.1|1044880_1045186_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011302836.1|1045470_1046184_+	transaldolase	NA	E3SKN5	Synechococcus_phage	36.3	2.9e-20
WP_011302838.1|1047299_1047749_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	47.5	1.3e-21
WP_011302839.1|1047756_1048182_-	competence protein ComK	NA	NA	NA	NA	NA
WP_174543113.1|1048221_1048665_-	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	44.8	3.5e-24
>prophage 3
NZ_CP054440	Staphylococcus saprophyticus strain UTI-058y chromosome, complete genome	2550339	1053104	1070192	2550339	tRNA	Staphylococcus_phage(100.0%)	15	NA	NA
WP_048787170.1|1053104_1054571_+	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	58.6	5.5e-13
WP_011302848.1|1055112_1056156_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	64.4	1.0e-130
WP_011302849.1|1056162_1056795_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	64.8	5.0e-72
WP_011302850.1|1056806_1057988_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	71.2	4.2e-165
WP_002482978.1|1058001_1058460_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	76.3	6.6e-58
WP_047504116.1|1058724_1059726_-	proline dehydrogenase family protein	NA	A0A2H4PQT6	Staphylococcus_phage	68.5	7.3e-126
WP_011302852.1|1059992_1060817_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_011302853.1|1061052_1062009_+	L-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_002482982.1|1062160_1062562_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011302854.1|1062680_1063241_-	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	63.8	9.5e-67
WP_011302855.1|1063237_1064191_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	83.3	7.3e-67
WP_011302856.1|1064300_1065470_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	77.4	2.0e-167
WP_011302857.1|1065998_1068413_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	85.6	0.0e+00
WP_002482987.1|1068431_1068743_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	68.9	4.5e-34
WP_011302858.1|1068923_1070192_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	77.2	1.5e-38
>prophage 4
NZ_CP054440	Staphylococcus saprophyticus strain UTI-058y chromosome, complete genome	2550339	1191961	1201086	2550339	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_047503974.1|1191961_1192966_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.9	1.7e-05
WP_047503971.1|1192968_1193994_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_011302950.1|1194014_1195160_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	45.0	2.5e-85
WP_011302951.1|1195175_1195436_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	44.1	7.4e-06
WP_047503968.1|1195817_1198094_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	34.6	1.7e-29
WP_048787235.1|1198275_1200555_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.4	2.9e-69
WP_002483102.1|1200567_1201086_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.2	6.6e-30
>prophage 5
NZ_CP054440	Staphylococcus saprophyticus strain UTI-058y chromosome, complete genome	2550339	1327387	1337354	2550339		uncultured_Mediterranean_phage(28.57%)	11	NA	NA
WP_002483230.1|1327387_1328275_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	31.4	5.1e-38
WP_011303058.1|1328342_1328849_-	DUF309 domain-containing protein	NA	NA	NA	NA	NA
WP_011303059.1|1328940_1329675_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	23.5	1.4e-09
WP_047503875.1|1329658_1330207_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	31.4	1.6e-10
WP_002483234.1|1330199_1330937_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_011303060.1|1331063_1331789_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	42.6	1.1e-46
WP_174538820.1|1331769_1333536_+	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	23.8	1.7e-21
WP_037538408.1|1333963_1334509_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_002483238.1|1334664_1334913_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	4.9e-15
WP_047503872.1|1335022_1335982_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_047503869.1|1335974_1337354_+	ATP-dependent DNA helicase RecQ	NA	M1PGQ0	Moumouvirus	32.4	5.4e-55
>prophage 6
NZ_CP054440	Staphylococcus saprophyticus strain UTI-058y chromosome, complete genome	2550339	1666856	1732757	2550339	plate,holin,transposase,portal,tRNA,terminase,tail,head	Staphylococcus_phage(43.24%)	73	NA	NA
WP_011303319.1|1666856_1669607_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	27.8	2.0e-88
WP_011303320.1|1669849_1670452_-	DivIVA domain-containing protein	NA	NA	NA	NA	NA
WP_104010417.1|1670591_1671371_-	RNA-binding protein	NA	NA	NA	NA	NA
WP_002483537.1|1671478_1671769_-	YggT family protein	NA	NA	NA	NA	NA
WP_002483538.1|1671782_1672388_-	cell division protein SepF	NA	NA	NA	NA	NA
WP_011303322.1|1672393_1673068_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_047503513.1|1673085_1673874_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_002483541.1|1674320_1675493_-	cell division protein FtsZ	NA	NA	NA	NA	NA
WP_047503508.1|1675522_1676953_-	cell division protein FtsA	NA	NA	NA	NA	NA
WP_052190972.1|1677058_1677946_-	FtsQ-type POTRA domain-containing protein	NA	NA	NA	NA	NA
WP_002483544.1|1677961_1679311_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
WP_011303326.1|1679312_1680278_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
WP_047503505.1|1680471_1682706_-	penicillin-binding protein	NA	NA	NA	NA	NA
WP_011303328.1|1682686_1683079_-	cell division protein FtsL	NA	NA	NA	NA	NA
WP_011303329.1|1683093_1684029_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_011303330.1|1684043_1684475_-	division/cell wall cluster transcriptional repressor MraZ	NA	NA	NA	NA	NA
WP_048787295.1|1684624_1686238_-	bacillithiol biosynthesis cysteine-adding enzyme BshC	NA	NA	NA	NA	NA
WP_047503500.1|1686500_1686941_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_011303333.1|1687055_1687739_-	noncanonical pyrimidine nucleotidase, YjjG family	NA	NA	NA	NA	NA
WP_011303334.1|1687878_1688013_-	beta-class phenol-soluble modulin	NA	NA	NA	NA	NA
WP_048787296.1|1688051_1688186_-	beta-class phenol-soluble modulin	NA	NA	NA	NA	NA
WP_048787297.1|1688802_1690686_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_103314661.1|1693028_1695386_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	44.9	6.2e-160
WP_011303341.1|1695578_1695893_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011303342.1|1696033_1696942_-|transposase	IS3 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	43.5	8.0e-47
WP_011303343.1|1696902_1697586_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_115340783.1|1697669_1697747_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011303346.1|1698821_1699232_-	YolD-like family protein	NA	A0A2H4JEH6	uncultured_Caudovirales_phage	89.7	2.4e-67
WP_011303347.1|1699241_1699433_-	hypothetical protein	NA	A0A2H4JGI3	uncultured_Caudovirales_phage	95.2	7.0e-30
WP_061050614.1|1699528_1699777_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_061050616.1|1700369_1700879_-	DUF4065 domain-containing protein	NA	A8ATC0	Listeria_phage	53.7	6.0e-44
WP_061050681.1|1701259_1702207_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1P8CMK9	Staphylococcus_phage	52.4	1.0e-84
WP_041080397.1|1702634_1702892_-|holin	phage holin	holin	A0A2I6PF56	Staphylococcus_phage	51.9	1.7e-10
WP_104013924.1|1702945_1703044_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041080395.1|1703292_1703580_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061050617.1|1703614_1705498_-	glucosaminidase domain-containing protein	NA	B7T0E8	Staphylococcus_virus	53.0	9.0e-194
WP_061050618.1|1705551_1705884_-	DUF2977 domain-containing protein	NA	NA	NA	NA	NA
WP_061050619.1|1705883_1707749_-|plate	phage baseplate upper protein	plate	A0EWU3	Staphylococcus_virus	40.5	7.2e-127
WP_081095023.1|1707748_1709656_-	hypothetical protein	NA	A0A059T5B2	Staphylococcus_phage	58.1	1.7e-208
WP_061050620.1|1709670_1711527_-|tail	phage tail protein	tail	Q4ZC57	Staphylococcus_virus	53.2	2.3e-181
WP_061050621.1|1711537_1712464_-|tail	phage tail family protein	tail	Q4ZC58	Staphylococcus_virus	51.3	3.6e-79
WP_061050622.1|1712475_1715565_-	hypothetical protein	NA	Q4ZCD8	Staphylococcus_virus	56.3	6.5e-157
WP_061050623.1|1715567_1715876_-	hypothetical protein	NA	A0A2H4JC15	uncultured_Caudovirales_phage	62.7	1.1e-27
WP_061050624.1|1715938_1716433_-	hypothetical protein	NA	A0A2H4JI48	uncultured_Caudovirales_phage	72.0	1.1e-61
WP_061050625.1|1716485_1717031_-	hypothetical protein	NA	A0A1W6JPA3	Staphylococcus_phage	80.8	1.0e-73
WP_061050626.1|1717036_1717459_-	DUF3168 domain-containing protein	NA	A1BU61	Staphylococcus_virus	63.7	2.9e-44
WP_061050627.1|1717470_1717884_-	HK97 gp10 family phage protein	NA	A0A0N9BAY5	Staphylococcus_phage	74.3	7.8e-58
WP_061050628.1|1717870_1718206_-	hypothetical protein	NA	Q4ZCE5	Staphylococcus_virus	59.1	2.0e-35
WP_061050629.1|1718207_1718504_-|head,tail	phage head-tail adapter protein	head,tail	Q4ZC67	Staphylococcus_virus	63.3	4.9e-30
WP_061050630.1|1718503_1718797_-	Rho termination factor N-terminal domain-containing protein	NA	A0A1W6JQI6	Staphylococcus_phage	65.3	2.5e-26
WP_061050631.1|1718810_1719743_-	hypothetical protein	NA	A0A1W6JPD7	Staphylococcus_phage	79.7	6.8e-142
WP_061050632.1|1719755_1720280_-	phage scaffolding protein	NA	Q4ZBR6	Staphylococcus_phage	59.4	3.7e-20
WP_160279508.1|1720399_1720564_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157822572.1|1720630_1720777_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081095024.1|1720773_1722366_-	hypothetical protein	NA	A0A2H4JC26	uncultured_Caudovirales_phage	76.7	1.3e-132
WP_061050633.1|1722325_1723738_-|portal	phage portal protein	portal	A0A0H4IPW9	Staphylococcus_phage	73.9	2.2e-208
WP_061050634.1|1723750_1724959_-|terminase	PBSX family phage terminase large subunit	terminase	R4IG95	Staphylococcus_phage	82.0	2.7e-199
WP_061050635.1|1724951_1725473_-|terminase	terminase small subunit	terminase	I1W650	Staphylococcus_phage	62.7	1.6e-36
WP_061050636.1|1725538_1725871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061050637.1|1726132_1726555_-	transcriptional regulator	NA	A0A0F6N3E5	Staphylococcus_phage	80.6	1.6e-58
WP_164972273.1|1726569_1726713_-	hypothetical protein	NA	Q4ZC01	Staphylococcus_virus	52.2	6.9e-06
WP_061050638.1|1726897_1727368_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061050639.1|1727383_1727737_-	hypothetical protein	NA	Q4ZC91	Staphylococcus_virus	29.6	2.2e-05
WP_061050640.1|1727736_1727922_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061050641.1|1727934_1728141_-	hypothetical protein	NA	A0A1W6JPS2	Staphylococcus_phage	47.8	2.3e-10
WP_061050642.1|1728118_1728319_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081095027.1|1728315_1729119_-	ATP-binding protein	NA	A0A2I6PDV5	Staphylococcus_phage	46.2	3.5e-62
WP_061050644.1|1729216_1730068_-	DnaD domain protein	NA	A0A1Q1PVU4	Staphylococcus_phage	44.8	9.4e-50
WP_061050645.1|1730109_1730925_-	recombinase RecT	NA	S6AVW6	Thermus_phage	48.9	2.1e-59
WP_061050682.1|1730936_1731848_-	YqaJ viral recombinase family protein	NA	A6XMH8	Bacillus_virus	50.5	6.1e-79
WP_061050646.1|1731892_1732192_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061050647.1|1732266_1732446_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061050648.1|1732451_1732757_-	DUF771 domain-containing protein	NA	Q4ZD49	Staphylococcus_phage	45.5	8.4e-17
>prophage 7
NZ_CP054440	Staphylococcus saprophyticus strain UTI-058y chromosome, complete genome	2550339	1817517	1825992	2550339		Synechococcus_phage(16.67%)	9	NA	NA
WP_011303433.1|1817517_1818084_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	38.2	9.7e-27
WP_011303434.1|1818086_1819115_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	44.5	4.6e-67
WP_011303435.1|1819107_1820595_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	1.6e-44
WP_011303436.1|1820573_1822763_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.6	1.4e-137
WP_011303437.1|1822755_1823427_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_011303438.1|1823426_1823687_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_011303439.1|1823689_1824391_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A1D7SE76	Cyanophage	42.5	6.8e-46
WP_011303440.1|1824395_1825523_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_011303441.1|1825509_1825992_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.0	2.6e-20
>prophage 8
NZ_CP054440	Staphylococcus saprophyticus strain UTI-058y chromosome, complete genome	2550339	2063973	2082703	2550339		uncultured_Caudovirales_phage(33.33%)	14	NA	NA
WP_011303647.1|2063973_2064942_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.3	2.6e-136
WP_002483928.1|2065355_2066324_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	94.4	2.2e-175
WP_048787330.1|2066447_2068553_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	90.0	0.0e+00
WP_002483930.1|2068515_2068914_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	76.5	8.6e-54
WP_011303649.1|2069640_2070528_+	DMT family transporter	NA	NA	NA	NA	NA
WP_002483932.1|2070541_2071042_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	72.3	2.0e-52
WP_061050308.1|2071223_2072738_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	35.8	5.6e-69
WP_061050309.1|2073105_2074611_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.0	2.4e-64
WP_104013913.1|2075080_2076028_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	23.6	3.9e-12
WP_002483937.1|2076198_2076747_-	5'-3'-deoxyribonucleotidase	NA	A0A0A0PKY7	Bacillus_phage	39.0	2.0e-29
WP_061050311.1|2076924_2077980_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	27.2	2.3e-21
WP_002483939.1|2078138_2079656_-	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA	NA
WP_048787328.1|2079652_2080615_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.5	4.8e-26
WP_047502733.1|2080924_2082703_-	DNA helicase RecQ	NA	K7YHB4	Megavirus	36.4	2.2e-77
>prophage 9
NZ_CP054440	Staphylococcus saprophyticus strain UTI-058y chromosome, complete genome	2550339	2091006	2098556	2550339		Pandoravirus(16.67%)	9	NA	NA
WP_011303663.1|2091006_2092149_-	aminodeoxychorismate synthase component I	NA	S4VNU7	Pandoravirus	36.7	5.4e-24
WP_011303664.1|2092132_2092726_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	41.5	1.9e-36
WP_002483950.1|2092981_2093653_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	54.9	1.2e-63
WP_011303665.1|2093654_2094080_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_002483952.1|2094072_2094789_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.4	2.5e-51
WP_011303666.1|2095029_2095623_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002483954.1|2095691_2095943_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_011303667.1|2096160_2097222_-	glycosyltransferase family 2 protein	NA	A0A192Y8W7	Salmonella_phage	42.3	8.7e-61
WP_002483956.1|2097716_2098556_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	40.2	1.2e-52
>prophage 10
NZ_CP054440	Staphylococcus saprophyticus strain UTI-058y chromosome, complete genome	2550339	2422223	2434143	2550339	integrase,terminase	Staphylococcus_phage(50.0%)	15	2418465:2418479	2438303:2438317
2418465:2418479	attL	AACTATTTGTTTGTT	NA	NA	NA	NA
WP_061050388.1|2422223_2422709_-|terminase	terminase small subunit	terminase	A0A1S5S7Z2	Streptococcus_phage	45.8	1.3e-19
WP_061050389.1|2422726_2423290_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061050390.1|2423303_2423540_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061050391.1|2423536_2423959_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061050392.1|2424126_2424606_-	HNH endonuclease	NA	NA	NA	NA	NA
WP_142351111.1|2424668_2424896_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_061050394.1|2425016_2425256_-	hypothetical protein	NA	NA	NA	NA	NA
WP_174543135.1|2425608_2426703_-	virulence-associated protein E	NA	A0A1W6JQD6	Staphylococcus_phage	44.4	4.1e-90
WP_061050396.1|2426992_2427832_-	primase C-terminal domain-containing protein	NA	Q4ZE74	Staphylococcus_phage	36.2	1.5e-44
WP_061050397.1|2428139_2428412_-	hypothetical protein	NA	Q4ZE77	Staphylococcus_phage	41.8	2.3e-10
WP_069844463.1|2428752_2429298_+	helix-turn-helix transcriptional regulator	NA	A0A0E3U244	Fusobacterium_phage	51.7	2.2e-07
WP_061050399.1|2429300_2430503_+|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	45.8	1.5e-93
WP_061050400.1|2430503_2431019_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002484263.1|2431112_2432654_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	31.6	1.8e-22
WP_002484264.1|2432676_2434143_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.9	7.2e-98
2438303:2438317	attR	AACAAACAAATAGTT	NA	NA	NA	NA
>prophage 1
NZ_CP054441	Staphylococcus saprophyticus strain UTI-058y plasmid pUTI-058y-1, complete sequence	42714	29160	39458	42714	transposase	Staphylococcus_phage(57.14%)	9	NA	NA
WP_031884083.1|29160_29787_+	recombinase family protein	NA	A0A1V0E035	Clostridioides_phage	33.8	3.7e-19
WP_095312408.1|30487_31774_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031884086.1|31809_32199_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078091644.1|32237_32570_-	YolD-like family protein	NA	A0A2H4JEH6	uncultured_Caudovirales_phage	47.3	2.2e-15
WP_001106019.1|32603_33278_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	100.0	8.1e-129
WP_000282655.1|33377_34334_+	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	100.0	1.1e-190
WP_000175735.1|34375_34861_+	trimethoprim-resistant dihydrofolate reductase DfrC	NA	A0A0N9S8H6	Staphylococcus_phage	100.0	1.1e-90
WP_001106022.1|35324_35999_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9SKD3	Staphylococcus_phage	100.0	6.2e-129
WP_031896209.1|37886_39458_-	ABC-F type ribosomal protection protein	NA	A0A1B0RXA0	Streptococcus_phage	34.6	5.8e-69
