assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013340825.1_ASM1334082v1	NZ_AP023205	Escherichia coli strain TUM18781	1	1176307-1176424	1	CRISPRCasFinder	no		c2c9_V-U4,DEDDh,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DinG	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,DEDDh,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DinG,WYL	NA,NA|55aa|down_0|NZ_AP023205.1_1176497_1176662_-	NA|115aa|up_9|NZ_AP023205.1_1164028_1164373_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|up_8|NZ_AP023205.1_1164561_1165500_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|NZ_AP023205.1_1165598_1166588_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|NZ_AP023205.1_1166609_1167941_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|NZ_AP023205.1_1167966_1169175_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|NZ_AP023205.1_1169208_1171503_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|NZ_AP023205.1_1171516_1171906_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|NZ_AP023205.1_1171977_1173342_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|NZ_AP023205.1_1173616_1174948_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|NZ_AP023205.1_1174975_1176286_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|NZ_AP023205.1_1176497_1176662_-	NA	NA|234aa|down_1|NZ_AP023205.1_1176684_1177386_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|NZ_AP023205.1_1177490_1178387_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|NZ_AP023205.1_1178437_1178794_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|NZ_AP023205.1_1179035_1179401_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_5|NZ_AP023205.1_1179693_1180680_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|161aa|down_6|NZ_AP023205.1_1180749_1181232_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_7|NZ_AP023205.1_1181327_1181627_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_8|NZ_AP023205.1_1181616_1182021_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_9|NZ_AP023205.1_1182023_1182329_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]
GCF_013340825.1_ASM1334082v1	NZ_AP023205	Escherichia coli strain TUM18781	2	1596846-1598216	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3	c2c9_V-U4,DEDDh,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DinG	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	22,22,22	22	Unclear	c2c9_V-U4,DEDDh,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DinG,WYL	NA|47aa|up_1|NZ_AP023205.1_1595555_1595696_-,NA	NA|434aa|up_9|NZ_AP023205.1_1586252_1587554_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_AP023205.1_1587601_1589836_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_AP023205.1_1589913_1590162_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_AP023205.1_1590161_1590497_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_AP023205.1_1590567_1591359_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_AP023205.1_1591586_1593224_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_AP023205.1_1593311_1594610_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_AP023205.1_1594669_1595542_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_AP023205.1_1595555_1595696_-	NA	NA|224aa|up_0|NZ_AP023205.1_1595834_1596506_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_AP023205.1_1598854_1600333_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_AP023205.1_1600359_1601637_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_AP023205.1_1601954_1602740_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_AP023205.1_1602809_1604264_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_AP023205.1_1604285_1605695_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_AP023205.1_1605672_1606452_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_AP023205.1_1606448_1607309_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_AP023205.1_1607456_1608032_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_AP023205.1_1608048_1608309_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_AP023205.1_1608299_1609571_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_013340825.1_ASM1334082v1	NZ_AP023205	Escherichia coli strain TUM18781	3	1623915-1624799	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	c2c9_V-U4,DEDDh,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	14,14,14	14	TypeI-E	c2c9_V-U4,DEDDh,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DinG,WYL	NA,NA	NA|245aa|up_9|NZ_AP023205.1_1613914_1614649_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_AP023205.1_1614913_1615066_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_7|NZ_AP023205.1_1615259_1617959_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_AP023205.1_1618056_1619619_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_AP023205.1_1619615_1620152_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|352aa|up_4|NZ_AP023205.1_1620163_1621219_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_AP023205.1_1621229_1621976_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_AP023205.1_1621957_1622608_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_AP023205.1_1622604_1623525_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_AP023205.1_1623524_1623818_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_AP023205.1_1624880_1625918_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_AP023205.1_1626169_1627078_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_AP023205.1_1627079_1628507_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_AP023205.1_1628506_1629112_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_AP023205.1_1629161_1629485_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_AP023205.1_1629678_1629990_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_AP023205.1_1630008_1630719_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_AP023205.1_1630718_1631198_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_AP023205.1_1631194_1632244_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_AP023205.1_1632224_1632986_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_013340825.1_ASM1334082v1	NZ_AP023205	Escherichia coli strain TUM18781	4	2749817-2749940	4	CRISPRCasFinder	no	DEDDh	c2c9_V-U4,DEDDh,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,DEDDh,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DinG,WYL	NA,NA|30aa|down_7|NZ_AP023205.1_2758836_2758926_+	NA|471aa|up_9|NZ_AP023205.1_2739270_2740683_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_AP023205.1_2741239_2741449_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_AP023205.1_2741904_2742531_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_AP023205.1_2742551_2744654_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_AP023205.1_2744666_2745305_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_AP023205.1_2745368_2746037_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_AP023205.1_2746033_2746819_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_AP023205.1_2746822_2747635_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_AP023205.1_2747646_2749251_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_AP023205.1_2749376_2749682_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_AP023205.1_2750254_2751511_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_AP023205.1_2751551_2752925_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_AP023205.1_2753139_2753781_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_AP023205.1_2753820_2754969_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_AP023205.1_2755259_2756471_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_AP023205.1_2756583_2757516_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_AP023205.1_2757512_2758538_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_AP023205.1_2758836_2758926_+	NA	NA|390aa|down_8|NZ_AP023205.1_2759091_2760261_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_AP023205.1_2760406_2760988_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_013340825.1_ASM1334082v1	NZ_AP023205	Escherichia coli strain TUM18781	5	3423748-3423839	5	CRISPRCasFinder	no		c2c9_V-U4,DEDDh,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DinG	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,DEDDh,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DinG,WYL	NA|70aa|up_9|NZ_AP023205.1_3412823_3413033_-,NA	NA|70aa|up_9|NZ_AP023205.1_3412823_3413033_-	NA	NA|1321aa|up_8|NZ_AP023205.1_3413087_3417050_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_AP023205.1_3417089_3417728_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_AP023205.1_3418015_3419107_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_AP023205.1_3419106_3419799_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_AP023205.1_3419810_3420197_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_AP023205.1_3420204_3421005_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_AP023205.1_3421014_3421605_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_AP023205.1_3421615_3422110_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_AP023205.1_3422130_3423459_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_AP023205.1_3424262_3424859_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_AP023205.1_3424879_3425107_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_AP023205.1_3425144_3426386_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_AP023205.1_3426678_3427935_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_AP023205.1_3428195_3429116_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_AP023205.1_3429115_3429421_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_AP023205.1_3429513_3430113_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_AP023205.1_3430109_3432656_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_AP023205.1_3432655_3433828_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_AP023205.1_3433957_3434650_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_013340825.1_ASM1334082v1	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	1	9826-9919	1	CRISPRCasFinder	no			Orphan	CGATGTAACAACGCGCACAGATCAGTCCCC	30	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,DEDDh,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DinG,WYL	NA,NA|326aa|down_5|NZ_AP023208.1_14620_15598_+	NA|815aa|up_9|NZ_AP023208.1_7_2452_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|143aa|up_8|NZ_AP023208.1_3685_4114_-	pfam05130, FlgN, FlgN protein	NA|93aa|up_7|NZ_AP023208.1_4126_4405_-	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM	NA|246aa|up_6|NZ_AP023208.1_4485_5223_-	PRK06804, flgA, flagellar basal body P-ring formation protein FlgA	NA|112aa|up_5|NZ_AP023208.1_5304_5640_+	PRK12685, flgB, flagellar basal body rod protein FlgB; Reviewed	NA|144aa|up_4|NZ_AP023208.1_5642_6074_+	PRK06802, flgC, flagellar basal body rod protein FlgC; Reviewed	NA|238aa|up_3|NZ_AP023208.1_6073_6787_+	PRK09619, flgD, flagellar hook assembly protein FlgD	NA|401aa|up_2|NZ_AP023208.1_6946_8149_+	PRK06803, flgE, flagellar basal body protein FlaE	NA|246aa|up_1|NZ_AP023208.1_8148_8886_+	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed	NA|262aa|up_0|NZ_AP023208.1_8964_9750_+	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional	NA|222aa|down_0|NZ_AP023208.1_10021_10687_+	PRK12407, flgH, flagellar basal body L-ring protein FlgH	NA|367aa|down_1|NZ_AP023208.1_10701_11802_+	PRK05303, flgI, flagellar basal body P-ring protein FlgI	NA|100aa|down_2|NZ_AP023208.1_11801_12101_+	PRK12708, flgJ, peptidoglycan hydrolase; Reviewed	NA|459aa|down_3|NZ_AP023208.1_12283_13660_+	PRK07191, flgK, flagellar hook-associated protein FlgK; Validated	NA|310aa|down_4|NZ_AP023208.1_13674_14604_+	PRK07192, flgL, flagellar hook-associated protein FlgL; Reviewed	NA|326aa|down_5|NZ_AP023208.1_14620_15598_+	NA	NA|281aa|down_6|NZ_AP023208.1_15652_16495_-	COG3710, CadC, DNA-binding winged-HTH domains [Transcription]	NA|305aa|down_7|NZ_AP023208.1_16980_17895_+	NF033376, flg_lateral_LafA, lateral flagellin LafA	NA|439aa|down_8|NZ_AP023208.1_18100_19417_+	PRK08032, fliD, flagellar capping protein; Reviewed	NA|131aa|down_9|NZ_AP023208.1_19439_19832_+	pfam02561, FliS, Flagellar protein FliS
