assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013340745.1_ASM1334074v1	NZ_CP050183	Bacillus thuringiensis strain HER1410 chromosome, complete genome	1	1667951-1668033	1	CRISPRCasFinder	no		cas3,csa3,RT,WYL,DinG,cas14k,DEDDh	Orphan	CCCTGTCAAGTAGACAGTAATAAAA	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,RT,WYL,DinG,cas14k,DEDDh,cas14j	NA,NA|45aa|down_7|NZ_CP050183.1_1678005_1678140_-	NA|213aa|up_9|NZ_CP050183.1_1656592_1657231_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|367aa|up_8|NZ_CP050183.1_1657235_1658336_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|313aa|up_7|NZ_CP050183.1_1658472_1659411_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|370aa|up_6|NZ_CP050183.1_1659448_1660558_+	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|382aa|up_5|NZ_CP050183.1_1660559_1661705_+	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|313aa|up_4|NZ_CP050183.1_1661746_1662685_-	pfam02450, LCAT, Lecithin:cholesterol acyltransferase	NA|404aa|up_3|NZ_CP050183.1_1662802_1664014_+	TIGR04265, bac_cardiolipin, cardiolipin synthase	NA|248aa|up_2|NZ_CP050183.1_1664068_1664812_-	PRK14557, pyrH, uridylate kinase; Provisional	NA|424aa|up_1|NZ_CP050183.1_1665188_1666460_+	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional	NA|480aa|up_0|NZ_CP050183.1_1666484_1667924_+	PRK14515, PRK14515, aspartate ammonia-lyase; Provisional	NA|294aa|down_0|NZ_CP050183.1_1668041_1668923_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|103aa|down_1|NZ_CP050183.1_1668919_1669228_-	pfam13518, HTH_28, Helix-turn-helix domain	NA|402aa|down_2|NZ_CP050183.1_1669241_1670446_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|571aa|down_3|NZ_CP050183.1_1670593_1672306_+	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase	NA|433aa|down_4|NZ_CP050183.1_1672369_1673668_+	smart00387, HATPase_c, Histidine kinase-like ATPases	NA|311aa|down_5|NZ_CP050183.1_1673670_1674603_+	pfam08664, YcbB, YcbB domain	NA|1061aa|down_6|NZ_CP050183.1_1674721_1677904_+	COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	NA|45aa|down_7|NZ_CP050183.1_1678005_1678140_-	NA	NA|328aa|down_8|NZ_CP050183.1_1678877_1679861_+	PRK05425, PRK05425, asparagine synthetase AsnA; Provisional	NA|151aa|down_9|NZ_CP050183.1_1679919_1680372_-	cd08353, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family
GCF_013340745.1_ASM1334074v1	NZ_CP050183	Bacillus thuringiensis strain HER1410 chromosome, complete genome	2	2360460-2360553	2	CRISPRCasFinder	no	cas3	cas3,csa3,RT,WYL,DinG,cas14k,DEDDh	Unclear	TGAATTAATGCAACAAATTGCTCAG	25	0	0	NA	NA	NA	1	1	Unclear	cas3,csa3,RT,WYL,DinG,cas14k,DEDDh,cas14j	NA|120aa|up_9|NZ_CP050183.1_2350851_2351211_+,NA|84aa|up_7|NZ_CP050183.1_2351422_2351674_+,NA|129aa|up_5|NZ_CP050183.1_2353470_2353857_-,NA|155aa|up_4|NZ_CP050183.1_2354364_2354829_-,NA|67aa|up_0|NZ_CP050183.1_2359443_2359644_-,NA|71aa|down_0|NZ_CP050183.1_2361077_2361290_+,NA|43aa|down_8|NZ_CP050183.1_2368073_2368202_+,NA|59aa|down_9|NZ_CP050183.1_2368274_2368451_+	NA|120aa|up_9|NZ_CP050183.1_2350851_2351211_+	NA	NA|56aa|up_8|NZ_CP050183.1_2351229_2351397_+	pfam13128, DUF3954, Protein of unknown function (DUF3954)	NA|84aa|up_7|NZ_CP050183.1_2351422_2351674_+	NA	NA|170aa|up_6|NZ_CP050183.1_2351693_2352203_+	pfam08761, dUTPase_2, dUTPase	NA|129aa|up_5|NZ_CP050183.1_2353470_2353857_-	NA	NA|155aa|up_4|NZ_CP050183.1_2354364_2354829_-	NA	NA|161aa|up_3|NZ_CP050183.1_2356864_2357347_+	TIGR01637, Putative_autolysin_regulatory_protein_ArpU, phage transcriptional regulator, ArpU family	NA|181aa|up_2|NZ_CP050183.1_2357346_2357889_+	cd01192, INT_C_like_3, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain	NA|285aa|up_1|NZ_CP050183.1_2358415_2359270_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|67aa|up_0|NZ_CP050183.1_2359443_2359644_-	NA	NA|71aa|down_0|NZ_CP050183.1_2361077_2361290_+	NA	NA|237aa|down_1|NZ_CP050183.1_2362010_2362721_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|136aa|down_2|NZ_CP050183.1_2362838_2363246_+	cd06588, PhnB_like, Escherichia coli PhnB and similar proteins	NA|127aa|down_3|NZ_CP050183.1_2363267_2363648_+	TIGR00065, Cell_division_protein_FtsZ, cell division protein FtsZ	NA|562aa|down_4|NZ_CP050183.1_2363805_2365491_-	COG3961, COG3961, Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]	NA|161aa|down_5|NZ_CP050183.1_2365598_2366081_+	COG1846, MarR, Transcriptional regulators [Transcription]	NA|246aa|down_6|NZ_CP050183.1_2366247_2366985_+	PRK14115, gpmA, 2,3-diphosphoglycerate-dependent phosphoglycerate mutase	NA|246aa|down_7|NZ_CP050183.1_2367223_2367961_+	pfam14171, SpoIISA_toxin, Toxin SpoIISA, type II toxin-antitoxin system	NA|43aa|down_8|NZ_CP050183.1_2368073_2368202_+	NA	NA|59aa|down_9|NZ_CP050183.1_2368274_2368451_+	NA
GCF_013340745.1_ASM1334074v1	NZ_CP050183	Bacillus thuringiensis strain HER1410 chromosome, complete genome	3	3242826-3243349	1	CRT	no		cas3,csa3,RT,WYL,DinG,cas14k,DEDDh	Orphan	CCTTGNNNNCCTTGNGGACC	20	0	0	NA	NA	NA	8	8	Orphan	cas3,csa3,RT,WYL,DinG,cas14k,DEDDh,cas14j	NA|280aa|up_8|NZ_CP050183.1_3234146_3234986_-,NA|48aa|up_0|NZ_CP050183.1_3242151_3242295_+,NA|126aa|down_5|NZ_CP050183.1_3250589_3250967_+	NA|341aa|up_9|NZ_CP050183.1_3233034_3234057_-	pfam13350, Y_phosphatase3, Tyrosine phosphatase family	NA|280aa|up_8|NZ_CP050183.1_3234146_3234986_-	NA	NA|241aa|up_7|NZ_CP050183.1_3235037_3235760_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|280aa|up_6|NZ_CP050183.1_3235883_3236723_+	pfam10978, DUF2785, Protein of unknown function (DUF2785)	NA|333aa|up_5|NZ_CP050183.1_3237194_3238193_-	PRK12556, PRK12556, tryptophanyl-tRNA synthetase; Provisional	NA|386aa|up_4|NZ_CP050183.1_3238582_3239740_+	PRK12464, PRK12464, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional	NA|374aa|up_3|NZ_CP050183.1_3239769_3240891_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|83aa|up_2|NZ_CP050183.1_3240954_3241203_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|154aa|up_1|NZ_CP050183.1_3241412_3241874_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|48aa|up_0|NZ_CP050183.1_3242151_3242295_+	NA	NA|824aa|down_0|NZ_CP050183.1_3244069_3246541_-	pfam03157, Glutenin_hmw, High molecular weight glutenin subunit	NA|252aa|down_1|NZ_CP050183.1_3246687_3247443_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|181aa|down_2|NZ_CP050183.1_3247484_3248027_-	pfam11706, zf-CGNR, CGNR zinc finger	NA|394aa|down_3|NZ_CP050183.1_3248139_3249321_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|305aa|down_4|NZ_CP050183.1_3249375_3250290_-	sd00006, TPR, Tetratricopeptide repeat	NA|126aa|down_5|NZ_CP050183.1_3250589_3250967_+	NA	NA|80aa|down_6|NZ_CP050183.1_3251043_3251283_+	pfam13061, DUF3923, Protein of unknown function (DUF3923)	NA|183aa|down_7|NZ_CP050183.1_3251388_3251937_-	PRK04164, PRK04164, hypothetical protein; Provisional	NA|138aa|down_8|NZ_CP050183.1_3252135_3252549_-	pfam03899, ATP-synt_I, ATP synthase I chain	NA|443aa|down_9|NZ_CP050183.1_3252601_3253930_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]
GCF_013340745.1_ASM1334074v1	NZ_CP050183	Bacillus thuringiensis strain HER1410 chromosome, complete genome	4	4487112-4487839	2	CRT	no		cas3,csa3,RT,WYL,DinG,cas14k,DEDDh	Orphan	GTTGCTCCTGTTNNTCCTGTNGCNCCNGTTNNNCC	35	2	13	4487606-4487624|4487606-4487624|4487606-4487624|4487606-4487624|4487606-4487624|4487606-4487624|4487660-4487678|4487660-4487678|4487660-4487678|4487660-4487678|4487660-4487678|4487660-4487678|4487660-4487678	NZ_CP050183.1_4487111-4487129|NZ_CP050183.1_2323572-2323554|NZ_CP050183.1_2323635-2323617|NZ_CP050183.1_2323707-2323689|NZ_CP050183.1_2323725-2323707|NZ_CP050183.1_2323467-2323449|NZ_CP050183.1_1520154-1520136|NZ_CP050183.1_2323617-2323599|NZ_CP050183.1_2323743-2323725|NZ_CP050183.1_3245780-3245798|NZ_CP050183.1_4555135-4555153|NZ_CP050183.1_4684997-4685015|NZ_CP050183.1_4686017-4686035	NA	11	11	Orphan	cas3,csa3,RT,WYL,DinG,cas14k,DEDDh,cas14j	NA,NA|111aa|down_4|NZ_CP050183.1_4492827_4493160_+,NA|235aa|down_7|NZ_CP050183.1_4494852_4495557_-	NA|598aa|up_9|NZ_CP050183.1_4475685_4477479_-	PRK08641, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|209aa|up_8|NZ_CP050183.1_4477492_4478119_-	cd03497, SQR_TypeB_1_TM, Succinate:quinone oxidoreductase (SQR) Type B subfamily 1, transmembrane subunit; composed of proteins similar to Bacillus subtilis SQR	NA|150aa|up_7|NZ_CP050183.1_4478419_4478869_+	pfam10702, DUF2507, Protein of unknown function (DUF2507)	NA|595aa|up_6|NZ_CP050183.1_4478984_4480769_-	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|105aa|up_5|NZ_CP050183.1_4480918_4481233_-	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|326aa|up_4|NZ_CP050183.1_4481444_4482422_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|258aa|up_3|NZ_CP050183.1_4482458_4483232_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|259aa|up_2|NZ_CP050183.1_4483309_4484086_-	PRK07658, PRK07658, enoyl-CoA hydratase; Provisional	NA|211aa|up_1|NZ_CP050183.1_4484097_4484730_-	pfam08359, TetR_C_4, YsiA-like protein, C-terminal region	NA|562aa|up_0|NZ_CP050183.1_4484791_4486477_-	PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated	NA|325aa|down_0|NZ_CP050183.1_4488452_4489427_+	cd01146, FhuD, Fe3+-siderophore binding domain FhuD	NA|679aa|down_1|NZ_CP050183.1_4489434_4491471_+	PRK10577, PRK10577, Fe(3+)-hydroxamate ABC transporter permease FhuB	NA|57aa|down_2|NZ_CP050183.1_4491823_4491994_-	PRK06811, PRK06811, RNA polymerase factor sigma-70; Validated	NA|168aa|down_3|NZ_CP050183.1_4492187_4492691_+	pfam05163, DinB, DinB family	NA|111aa|down_4|NZ_CP050183.1_4492827_4493160_+	NA	NA|232aa|down_5|NZ_CP050183.1_4493223_4493919_-	COG1277, NosY, ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]	NA|290aa|down_6|NZ_CP050183.1_4493945_4494815_-	pfam13349, DUF4097, Putative adhesin	NA|235aa|down_7|NZ_CP050183.1_4494852_4495557_-	NA	NA|308aa|down_8|NZ_CP050183.1_4495715_4496639_-	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter	NA|312aa|down_9|NZ_CP050183.1_4496764_4497700_-	cd16947, HATPase_YcbM-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Bacillus subtilis YcbM
GCF_013340745.1_ASM1334074v1	NZ_CP050183	Bacillus thuringiensis strain HER1410 chromosome, complete genome	5	5362794-5362927	3	CRISPRCasFinder	no		cas3,csa3,RT,WYL,DinG,cas14k,DEDDh	Orphan	GTTGATTTCTCTTCTTTTTGAGA	23	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,RT,WYL,DinG,cas14k,DEDDh,cas14j	NA|45aa|up_0|NZ_CP050183.1_5362471_5362606_-,NA	NA|227aa|up_9|NZ_CP050183.1_5354449_5355130_-	pfam02397, Bac_transf, Bacterial sugar transferase	NA|295aa|up_8|NZ_CP050183.1_5355142_5356027_-	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|256aa|up_7|NZ_CP050183.1_5356268_5357036_-	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|234aa|up_6|NZ_CP050183.1_5357147_5357849_-	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|248aa|up_5|NZ_CP050183.1_5357838_5358582_-	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|226aa|up_4|NZ_CP050183.1_5358843_5359521_-	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|145aa|up_3|NZ_CP050183.1_5359865_5360300_-	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ	NA|334aa|up_2|NZ_CP050183.1_5360729_5361731_-	PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional	NA|91aa|up_1|NZ_CP050183.1_5361891_5362164_-	pfam12116, SpoIIID, Stage III sporulation protein D	NA|45aa|up_0|NZ_CP050183.1_5362471_5362606_-	NA	NA|235aa|down_0|NZ_CP050183.1_5363815_5364520_-	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|281aa|down_1|NZ_CP050183.1_5364519_5365362_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|336aa|down_2|NZ_CP050183.1_5365543_5366551_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|340aa|down_3|NZ_CP050183.1_5366651_5367671_-	TIGR02870, Stage_II_sporulation_protein_D, stage II sporulation protein D	NA|435aa|down_4|NZ_CP050183.1_5367877_5369182_-	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated	NA|237aa|down_5|NZ_CP050183.1_5369221_5369932_-	pfam08680, DUF1779, TATA-box binding	NA|79aa|down_6|NZ_CP050183.1_5369977_5370214_-	COG4836, COG4836, Predicted membrane protein [Function unknown]	NA|507aa|down_7|NZ_CP050183.1_5370416_5371937_-	PRK05777, PRK05777, NADH-quinone oxidoreductase subunit NuoN	NA|501aa|down_8|NZ_CP050183.1_5371938_5373441_-	PRK05846, PRK05846, NADH:ubiquinone oxidoreductase subunit M; Reviewed	NA|621aa|down_9|NZ_CP050183.1_5373437_5375300_-	PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L; Reviewed
