assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013340725.1_ASM1334072v1	NZ_CP046161	Ruminococcaceae bacterium LAM 19011 chromosome, complete genome	1	48-3599	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		WYL,DEDDh,cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,csa3,cas8c	Orphan	GTCGCTCCCTACACGGGAGCGTGGATTGAAAT,GTCGCTCCCTACACGGGAGCGTGGATTGAAAT,GTCGCTCCCTACACGGGAGCGTGGATTGAAAT	32,32,32	0	0	NA	NA	I-C:I-C:I-C	53,53,53	53	Orphan	WYL,DEDDh,cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,csa3,cas8c	NA,NA|100aa|down_0|NZ_CP046161.1_3706_4006_-,NA|61aa|down_3|NZ_CP046161.1_6660_6843_-,NA|67aa|down_5|NZ_CP046161.1_11631_11832_-	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|100aa|down_0|NZ_CP046161.1_3706_4006_-	NA	NA|568aa|down_1|NZ_CP046161.1_4204_5908_-	TIGR01641, Uncharacterized_protein_MJ0329, phage putative head morphogenesis protein, SPP1 gp7 family	NA|189aa|down_2|NZ_CP046161.1_5921_6488_-	pfam06810, Phage_GP20, Phage minor structural protein GP20	NA|61aa|down_3|NZ_CP046161.1_6660_6843_-	NA	NA|521aa|down_4|NZ_CP046161.1_6845_8408_-	TIGR01641, Uncharacterized_protein_MJ0329, phage putative head morphogenesis protein, SPP1 gp7 family	NA|67aa|down_5|NZ_CP046161.1_11631_11832_-	NA	NA|125aa|down_6|NZ_CP046161.1_12148_12523_-	COG1321, TroR, Mn-dependent transcriptional regulator [Transcription]	NA|57aa|down_7|NZ_CP046161.1_12586_12757_-	pfam12669, P12, Virus attachment protein p12 family	NA|834aa|down_8|NZ_CP046161.1_12790_15292_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|74aa|down_9|NZ_CP046161.1_15368_15590_-	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism]
GCF_013340725.1_ASM1334072v1	NZ_CP046161	Ruminococcaceae bacterium LAM 19011 chromosome, complete genome	2	8516-11522	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no		WYL,DEDDh,cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,csa3,cas8c	Orphan	GTCGCTCCCTACACGGGAGCGTGGATTGAAAT,GTCGCTCCCTACACGGGAGCGTGGATTGAAAT,GTCGCTCCCTACACGGGAGCGTGGATTGAAAT	32,32,32	0	0	NA	NA	I-C:I-C:I-C	44,45,45	45	Orphan	WYL,DEDDh,cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,csa3,cas8c	NA|100aa|up_4|NZ_CP046161.1_3706_4006_-,NA|61aa|up_1|NZ_CP046161.1_6660_6843_-,NA|67aa|down_0|NZ_CP046161.1_11631_11832_-,NA|126aa|down_7|NZ_CP046161.1_16769_17147_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|100aa|up_4|NZ_CP046161.1_3706_4006_-	NA	NA|568aa|up_3|NZ_CP046161.1_4204_5908_-	TIGR01641, Uncharacterized_protein_MJ0329, phage putative head morphogenesis protein, SPP1 gp7 family	NA|189aa|up_2|NZ_CP046161.1_5921_6488_-	pfam06810, Phage_GP20, Phage minor structural protein GP20	NA|61aa|up_1|NZ_CP046161.1_6660_6843_-	NA	NA|521aa|up_0|NZ_CP046161.1_6845_8408_-	TIGR01641, Uncharacterized_protein_MJ0329, phage putative head morphogenesis protein, SPP1 gp7 family	NA|67aa|down_0|NZ_CP046161.1_11631_11832_-	NA	NA|125aa|down_1|NZ_CP046161.1_12148_12523_-	COG1321, TroR, Mn-dependent transcriptional regulator [Transcription]	NA|57aa|down_2|NZ_CP046161.1_12586_12757_-	pfam12669, P12, Virus attachment protein p12 family	NA|834aa|down_3|NZ_CP046161.1_12790_15292_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|74aa|down_4|NZ_CP046161.1_15368_15590_-	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism]	NA|71aa|down_5|NZ_CP046161.1_15632_15845_-	pfam04023, FeoA, FeoA domain	NA|85aa|down_6|NZ_CP046161.1_16354_16609_-	pfam06419, COG6, Conserved oligomeric complex COG6	NA|126aa|down_7|NZ_CP046161.1_16769_17147_+	NA	NA|333aa|down_8|NZ_CP046161.1_17204_18203_-	pfam13189, Cytidylate_kin2, Cytidylate kinase-like family	NA|471aa|down_9|NZ_CP046161.1_18233_19646_-	pfam16980, CitMHS_2, Putative citrate transport
GCF_013340725.1_ASM1334072v1	NZ_CP046161	Ruminococcaceae bacterium LAM 19011 chromosome, complete genome	3	226491-232727	3,3,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6	WYL,DEDDh,cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,csa3,cas8c	Unclear	ATTTACATTCCAGTATGGAGAGATTAAAAG,ATTTACATTCCAGTATGGAGAGATTAAAAG,ATTTACATTCCAGTATGGAGAGATTAAAAG	30,30,30	0	0	NA	NA	NA:NA:NA	94,94,87	94	Unclear	WYL,DEDDh,cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,csa3,cas8c	NA|105aa|up_9|NZ_CP046161.1_215207_215522_-,NA|189aa|up_5|NZ_CP046161.1_217492_218059_-,NA|88aa|up_0|NZ_CP046161.1_225827_226091_+,NA|74aa|down_8|NZ_CP046161.1_241541_241763_+	NA|105aa|up_9|NZ_CP046161.1_215207_215522_-	NA	NA|249aa|up_8|NZ_CP046161.1_215962_216709_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|122aa|up_7|NZ_CP046161.1_216801_217167_-	pfam13518, HTH_28, Helix-turn-helix domain	NA|105aa|up_6|NZ_CP046161.1_217109_217424_-	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|189aa|up_5|NZ_CP046161.1_217492_218059_-	NA	NA|275aa|up_4|NZ_CP046161.1_219877_220702_-	cd07572, nit, Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases)	NA|516aa|up_3|NZ_CP046161.1_220969_222517_+	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]	NA|713aa|up_2|NZ_CP046161.1_222550_224689_+	PRK05443, PRK05443, polyphosphate kinase; Provisional	NA|358aa|up_1|NZ_CP046161.1_224739_225813_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|88aa|up_0|NZ_CP046161.1_225827_226091_+	NA	cas2|94aa|down_0|NZ_CP046161.1_232889_233171_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|331aa|down_1|NZ_CP046161.1_233176_234169_-	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas4|157aa|down_2|NZ_CP046161.1_234176_234647_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|771aa|down_3|NZ_CP046161.1_234685_236998_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|254aa|down_4|NZ_CP046161.1_237057_237819_-	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas7|292aa|down_5|NZ_CP046161.1_237823_238699_-	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas8b2|554aa|down_6|NZ_CP046161.1_238695_240357_-	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas6|224aa|down_7|NZ_CP046161.1_240374_241046_-	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	NA|74aa|down_8|NZ_CP046161.1_241541_241763_+	NA	NA|400aa|down_9|NZ_CP046161.1_242181_243381_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
GCF_013340725.1_ASM1334072v1	NZ_CP046161	Ruminococcaceae bacterium LAM 19011 chromosome, complete genome	4	519603-519717	4	CRISPRCasFinder	no		WYL,DEDDh,cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,csa3,cas8c	Orphan	CGGAAGAAGGCACTTCAGAGGAAGC	25	0	0	NA	NA	NA	2	2	Orphan	WYL,DEDDh,cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,csa3,cas8c	NA,NA|144aa|down_1|NZ_CP046161.1_520913_521345_-	NA|89aa|up_9|NZ_CP046161.1_507143_507410_-	pfam12652, CotJB, CotJB protein	NA|64aa|up_8|NZ_CP046161.1_507406_507598_-	pfam11007, CotJA, Spore coat associated protein JA (CotJA)	NA|426aa|up_7|NZ_CP046161.1_507794_509072_-	TIGR02909, conserved_hypothetical_protein, uncharacterized protein, YkwD family	NA|105aa|up_6|NZ_CP046161.1_509809_510124_+	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|326aa|up_5|NZ_CP046161.1_510116_511094_+	pfam08006, DUF1700, Protein of unknown function (DUF1700)	NA|219aa|up_4|NZ_CP046161.1_511176_511833_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|314aa|up_3|NZ_CP046161.1_512064_513006_+	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1	NA|190aa|up_2|NZ_CP046161.1_513106_513676_-	cd00004, Sortase, Sortase domain	NA|344aa|up_1|NZ_CP046161.1_513717_514749_-	pfam05738, Cna_B, Cna protein B-type domain	NA|289aa|up_0|NZ_CP046161.1_514745_515612_-	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|202aa|down_0|NZ_CP046161.1_520414_521020_-	TIGR02227, Inactive_signal_peptidase_IA	NA|144aa|down_1|NZ_CP046161.1_520913_521345_-	NA	NA|435aa|down_2|NZ_CP046161.1_521711_523016_-	cd16935, HATPase_AgrC-ComD-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Staphylococcus aureus AgrC and Streptococcus pneumoniae ComD which are involved in quorum sensing	NA|248aa|down_3|NZ_CP046161.1_523015_523759_-	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|595aa|down_4|NZ_CP046161.1_524303_526088_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|586aa|down_5|NZ_CP046161.1_526084_527842_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|219aa|down_6|NZ_CP046161.1_527954_528611_-	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|363aa|down_7|NZ_CP046161.1_528861_529950_+	cd03319, L-Ala-DL-Glu_epimerase, L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides	NA|156aa|down_8|NZ_CP046161.1_530044_530512_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|318aa|down_9|NZ_CP046161.1_530546_531500_-	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional
GCF_013340725.1_ASM1334072v1	NZ_CP046161	Ruminococcaceae bacterium LAM 19011 chromosome, complete genome	5	1871959-1880124	5,4,4	CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	WYL,DEDDh,cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,csa3,cas8c	Type I-C, Type I-U?,Type I-U	GTCGCTCCCTACACGGGAGCGTGGATTGAAAT,GTCGCTCCCTACACGGGAGCGTGGATTGAAAT,GTCGCTCCCTACACGGGAGCGTGGATTGAAAT	32,32,32	0	0	NA	NA	I-C:I-C:I-C	123,123,46	123	TypeI-C,TypeI-U?,TypeI-U	WYL,DEDDh,cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,csa3,cas8c	NA|59aa|up_8|NZ_CP046161.1_1863004_1863181_-,NA	NA|117aa|up_9|NZ_CP046161.1_1862292_1862643_-	cd08026, DUF326, Cysteine-rich 4 helical bundle widely conserved in bacteria	NA|59aa|up_8|NZ_CP046161.1_1863004_1863181_-	NA	NA|32aa|up_7|NZ_CP046161.1_1863416_1863512_-	cd02042, ParAB_family, partition proteins ParAB family	cas3|729aa|up_6|NZ_CP046161.1_1864126_1866313_+	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	cas5|233aa|up_5|NZ_CP046161.1_1866418_1867117_+	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|586aa|up_4|NZ_CP046161.1_1867113_1868871_+	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas7|307aa|up_3|NZ_CP046161.1_1868873_1869794_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas4|221aa|up_2|NZ_CP046161.1_1869796_1870459_+	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4	cas1|344aa|up_1|NZ_CP046161.1_1870455_1871487_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|97aa|up_0|NZ_CP046161.1_1871498_1871789_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
