assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013317125.1_ASM1331712v1	NZ_CP040883	Staphylococcus epidermidis strain O47 chromosome, complete genome	1	446430-446513	1	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	GAAATTCTACGGACAAGGCAAGTTG	25	1	2	446455-446488|446455-446488	NZ_CP040883.1_1224905-1224938|NZ_CP040883.1_1224964-1224997	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|46aa|up_7|NZ_CP040883.1_438642_438780_-,NA|59aa|up_6|NZ_CP040883.1_439123_439300_+,NA	NA|300aa|up_9|NZ_CP040883.1_435953_436853_+	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|393aa|up_8|NZ_CP040883.1_437234_438413_+	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|46aa|up_7|NZ_CP040883.1_438642_438780_-	NA	NA|59aa|up_6|NZ_CP040883.1_439123_439300_+	NA	NA|165aa|up_5|NZ_CP040883.1_439363_439858_-	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]	NA|204aa|up_4|NZ_CP040883.1_440023_440635_+	TIGR01076, Uncharacterized_protein_YhcS, LPXTG-site transpeptidase (sortase) family protein	NA|270aa|up_3|NZ_CP040883.1_440978_441788_+	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase	NA|331aa|up_2|NZ_CP040883.1_441974_442967_-	PRK12480, PRK12480, D-lactate dehydrogenase; Provisional	NA|221aa|up_1|NZ_CP040883.1_443213_443876_+	cd02149, NfsB-like, nitroreductase similar to Escherichia coli NfsB	NA|498aa|up_0|NZ_CP040883.1_444253_445747_+	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|263aa|down_0|NZ_CP040883.1_446575_447364_-	COG2514, COG2514, Predicted ring-cleavage extradiol dioxygenase [General function prediction only]	NA|94aa|down_1|NZ_CP040883.1_447625_447907_-	pfam14542, Acetyltransf_CG, GCN5-related N-acetyl-transferase	NA|316aa|down_2|NZ_CP040883.1_448073_449021_+	cd01017, AdcA, Metal binding protein AdcA	NA|475aa|down_3|NZ_CP040883.1_449091_450516_-	cd07088, ALDH_LactADH-AldA, Escherichia coli lactaldehyde dehydrogenase AldA-like	NA|350aa|down_4|NZ_CP040883.1_450764_451814_-	COG3949, COG3949, Uncharacterized membrane protein [Function unknown]	NA|596aa|down_5|NZ_CP040883.1_452161_453949_+	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|655aa|down_6|NZ_CP040883.1_454177_456142_-	COG3855, Fbp, Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]	NA|205aa|down_7|NZ_CP040883.1_456315_456930_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|333aa|down_8|NZ_CP040883.1_457037_458036_-	TIGR02356, molybdopterin_biosynthesis_protein_moeB, thiazole biosynthesis adenylyltransferase ThiF, E	NA|256aa|down_9|NZ_CP040883.1_458037_458805_-	PRK00208, thiG, thiazole synthase; Reviewed
GCF_013317125.1_ASM1331712v1	NZ_CP040883	Staphylococcus epidermidis strain O47 chromosome, complete genome	2	1722459-1722560	2	CRISPRCasFinder	no	cas3	WYL,csa3,DEDDh,cas3,DinG	Unclear	CACTTAATACATAGGTATTTAGTGTTTTTTATACATGA	38	0	0	NA	NA	NA	1	1	Unclear	WYL,csa3,DEDDh,cas3,DinG	NA,NA	NA|117aa|up_9|NZ_CP040883.1_1712228_1712579_-	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|246aa|up_8|NZ_CP040883.1_1712684_1713422_-	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|168aa|up_7|NZ_CP040883.1_1713421_1713925_-	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|92aa|up_6|NZ_CP040883.1_1714051_1714327_-	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|456aa|up_5|NZ_CP040883.1_1714634_1716002_-	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|111aa|up_4|NZ_CP040883.1_1716032_1716365_-	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|409aa|up_3|NZ_CP040883.1_1716366_1717593_-	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|1190aa|up_2|NZ_CP040883.1_1717589_1721159_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|246aa|up_1|NZ_CP040883.1_1721285_1722023_-	PRK00102, rnc, ribonuclease III; Reviewed	NA|78aa|up_0|NZ_CP040883.1_1722137_1722371_-	PRK00982, acpP, acyl carrier protein; Provisional	NA|245aa|down_0|NZ_CP040883.1_1722598_1723333_-	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|309aa|down_1|NZ_CP040883.1_1723325_1724252_-	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|326aa|down_2|NZ_CP040883.1_1724253_1725231_-	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|187aa|down_3|NZ_CP040883.1_1725232_1725793_-	PRK04424, PRK04424, transcription factor FapR	cas3|683aa|down_4|NZ_CP040883.1_1725951_1728000_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|553aa|down_5|NZ_CP040883.1_1728203_1729862_-	TIGR03599, YloV, DAK2 domain fusion protein YloV	NA|125aa|down_6|NZ_CP040883.1_1729876_1730251_-	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|63aa|down_7|NZ_CP040883.1_1730608_1730797_+	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|212aa|down_8|NZ_CP040883.1_1730879_1731515_-	TIGR01378, Thiamine_pyrophosphokinase, thiamine pyrophosphokinase	NA|215aa|down_9|NZ_CP040883.1_1731519_1732164_-	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE)
GCF_013317125.1_ASM1331712v1	NZ_CP040883	Staphylococcus epidermidis strain O47 chromosome, complete genome	3	2034010-2034105	3	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	CACTGCAATTTTTAATTGCTTGTGTCACTTATG	33	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|53aa|up_5|NZ_CP040883.1_2030028_2030187_+,NA|46aa|down_6|NZ_CP040883.1_2037852_2037990_-,NA|79aa|down_9|NZ_CP040883.1_2040165_2040402_+	NA|436aa|up_9|NZ_CP040883.1_2026251_2027559_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_8|NZ_CP040883.1_2027653_2028415_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|287aa|up_7|NZ_CP040883.1_2028736_2029597_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|64aa|up_6|NZ_CP040883.1_2029662_2029854_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|53aa|up_5|NZ_CP040883.1_2030028_2030187_+	NA	NA|271aa|up_4|NZ_CP040883.1_2030456_2031269_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_3|NZ_CP040883.1_2031289_2031985_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_2|NZ_CP040883.1_2031977_2033003_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_1|NZ_CP040883.1_2033255_2033552_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_0|NZ_CP040883.1_2033544_2033931_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|127aa|down_0|NZ_CP040883.1_2034190_2034571_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|118aa|down_1|NZ_CP040883.1_2034744_2035098_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|108aa|down_2|NZ_CP040883.1_2035240_2035564_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|181aa|down_3|NZ_CP040883.1_2035746_2036289_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_4|NZ_CP040883.1_2036369_2037086_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_5|NZ_CP040883.1_2037246_2037669_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|46aa|down_6|NZ_CP040883.1_2037852_2037990_-	NA	NA|167aa|down_7|NZ_CP040883.1_2038593_2039094_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|196aa|down_8|NZ_CP040883.1_2039364_2039952_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|79aa|down_9|NZ_CP040883.1_2040165_2040402_+	NA
GCF_013317125.1_ASM1331712v1	NZ_CP040883	Staphylococcus epidermidis strain O47 chromosome, complete genome	4	2185718-2185808	4	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	TGTTGAATTTCCCGGTGAAATTCTCTATGTTG	32	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|99aa|up_9|NZ_CP040883.1_2177803_2178100_-,NA|62aa|up_2|NZ_CP040883.1_2183415_2183601_-,NA	NA|99aa|up_9|NZ_CP040883.1_2177803_2178100_-	NA	NA|141aa|up_8|NZ_CP040883.1_2178231_2178654_-	TIGR01069, Endonuclease_MutS2, MutS2 family protein	NA|230aa|up_7|NZ_CP040883.1_2179092_2179782_+	pfam06570, DUF1129, Protein of unknown function (DUF1129)	NA|163aa|up_6|NZ_CP040883.1_2179837_2180326_-	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|403aa|up_5|NZ_CP040883.1_2180332_2181541_-	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|285aa|up_4|NZ_CP040883.1_2181598_2182453_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|198aa|up_3|NZ_CP040883.1_2182533_2183127_-	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|62aa|up_2|NZ_CP040883.1_2183415_2183601_-	NA	NA|382aa|up_1|NZ_CP040883.1_2183620_2184766_-	PRK13289, PRK13289, NO-inducible flavohemoprotein	NA|225aa|up_0|NZ_CP040883.1_2184937_2185612_+	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA	NA|159aa|down_0|NZ_CP040883.1_2185922_2186399_-	cd06121, cupin_YML079wp, Saccharomyces cerevisiae YML079wp and related proteins, cupin domain	NA|239aa|down_1|NZ_CP040883.1_2186398_2187115_-	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|120aa|down_2|NZ_CP040883.1_2187367_2187727_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|725aa|down_3|NZ_CP040883.1_2187841_2190016_-	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|220aa|down_4|NZ_CP040883.1_2190280_2190940_-	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|267aa|down_5|NZ_CP040883.1_2191350_2192151_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|337aa|down_6|NZ_CP040883.1_2192343_2193354_-	pfam01384, PHO4, Phosphate transporter family	NA|206aa|down_7|NZ_CP040883.1_2193368_2193986_-	COG1392, COG1392, Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]	NA|630aa|down_8|NZ_CP040883.1_2194507_2196397_-	pfam02687, FtsX, FtsX-like permease family	NA|254aa|down_9|NZ_CP040883.1_2196386_2197148_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
