assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013317085.1_ASM1331708v1	NZ_CP047405	Escherichia coli strain MS6193 chromosome, complete genome	1	652395-652491	1	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA,NA	NA|454aa|up_9|NZ_CP047405.1_640264_641626_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_8|NZ_CP047405.1_641682_642984_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_7|NZ_CP047405.1_643005_644151_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_6|NZ_CP047405.1_644279_645065_-	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|412aa|up_5|NZ_CP047405.1_645075_646311_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_4|NZ_CP047405.1_646332_647382_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|556aa|up_3|NZ_CP047405.1_647698_649366_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|420aa|up_2|NZ_CP047405.1_649375_650635_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|NZ_CP047405.1_650645_651461_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|NZ_CP047405.1_651457_652351_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|NZ_CP047405.1_652555_653623_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|NZ_CP047405.1_653619_654129_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|NZ_CP047405.1_654246_654969_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|NZ_CP047405.1_654971_655466_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|NZ_CP047405.1_655639_657025_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|NZ_CP047405.1_657060_657582_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|NZ_CP047405.1_657689_657902_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|NZ_CP047405.1_657903_658770_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|181aa|down_8|NZ_CP047405.1_659250_659793_+	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|231aa|down_9|NZ_CP047405.1_660012_660705_+	PRK15195, PRK15195, molecular chaperone FimC
GCF_013317085.1_ASM1331708v1	NZ_CP047405	Escherichia coli strain MS6193 chromosome, complete genome	2	1191674-1191765	2	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Orphan	GCATCAGAAGCAGGTAAAAAAGGTGG	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA,NA|70aa|down_9|NZ_CP047405.1_1202304_1202514_+	NA|231aa|up_9|NZ_CP047405.1_1180864_1181557_-	PRK10766, PRK10766, two-component system response regulator TorR	NA|391aa|up_8|NZ_CP047405.1_1181686_1182859_+	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|849aa|up_7|NZ_CP047405.1_1182858_1185405_+	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|200aa|up_6|NZ_CP047405.1_1185401_1186001_+	PRK04976, torD, chaperone protein TorD; Validated	NA|102aa|up_5|NZ_CP047405.1_1186093_1186399_-	PRK10265, PRK10265, chaperone modulator CbpM	NA|307aa|up_4|NZ_CP047405.1_1186398_1187319_-	PRK10266, PRK10266, curved DNA-binding protein	NA|420aa|up_3|NZ_CP047405.1_1187578_1188838_+	PRK09784, PRK09784, YccE family protein	NA|414aa|up_2|NZ_CP047405.1_1189126_1190368_+	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|76aa|up_1|NZ_CP047405.1_1190405_1190633_-	PRK10174, PRK10174, hypothetical protein; Provisional	NA|199aa|up_0|NZ_CP047405.1_1190653_1191250_-	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|443aa|down_0|NZ_CP047405.1_1191878_1193207_-	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|165aa|down_1|NZ_CP047405.1_1193227_1193722_-	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|197aa|down_2|NZ_CP047405.1_1193732_1194323_-	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|267aa|down_3|NZ_CP047405.1_1194332_1195133_-	TIGR03611, RutD, pyrimidine utilization protein D	NA|129aa|down_4|NZ_CP047405.1_1195140_1195527_-	TIGR03610, RutC, pyrimidine utilization protein C	NA|231aa|down_5|NZ_CP047405.1_1195538_1196231_-	TIGR03614, RutB, pyrimidine utilization protein B	NA|364aa|down_6|NZ_CP047405.1_1196230_1197322_-	TIGR03612, RutA, pyrimidine utilization protein A	NA|213aa|down_7|NZ_CP047405.1_1197609_1198248_+	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|1321aa|down_8|NZ_CP047405.1_1198287_1202250_-	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|70aa|down_9|NZ_CP047405.1_1202304_1202514_+	NA
GCF_013317085.1_ASM1331708v1	NZ_CP047405	Escherichia coli strain MS6193 chromosome, complete genome	3	1770857-1770967	3	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Orphan	AGGAATTAAGGAAGTATATATAAAGAGAG	29	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA|330aa|up_3|NZ_CP047405.1_1766936_1767926_-,NA|170aa|up_2|NZ_CP047405.1_1768012_1768522_-,NA|364aa|up_1|NZ_CP047405.1_1768849_1769941_-,NA|123aa|up_0|NZ_CP047405.1_1770337_1770706_-,NA	NA|109aa|up_9|NZ_CP047405.1_1762271_1762598_-	PRK02237, PRK02237, YnfA family protein	NA|114aa|up_8|NZ_CP047405.1_1762732_1763074_+	PRK13659, PRK13659, DUF1283 family protein	NA|187aa|up_7|NZ_CP047405.1_1763108_1763669_+	PRK15130, PRK15130, spermidine N1-acetyltransferase; Provisional	NA|237aa|up_6|NZ_CP047405.1_1763671_1764382_-	PRK02939, PRK02939, YnfC family lipoprotein	NA|102aa|up_5|NZ_CP047405.1_1764489_1764795_+	pfam06649, DUF1161, Protein of unknown function (DUF1161)	NA|493aa|up_4|NZ_CP047405.1_1764993_1766472_+	TIGR02166, Putative_dimethyl_sulfoxide_reductase_chain_YnfE, anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family	NA|330aa|up_3|NZ_CP047405.1_1766936_1767926_-	NA	NA|170aa|up_2|NZ_CP047405.1_1768012_1768522_-	NA	NA|364aa|up_1|NZ_CP047405.1_1768849_1769941_-	NA	NA|123aa|up_0|NZ_CP047405.1_1770337_1770706_-	NA	NA|533aa|down_0|NZ_CP047405.1_1771228_1772827_-	cd01184, INT_C_like_1, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain	NA|370aa|down_1|NZ_CP047405.1_1772809_1773919_+	TIGR02166, Putative_dimethyl_sulfoxide_reductase_chain_YnfE, anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family	NA|808aa|down_2|NZ_CP047405.1_1773979_1776403_+	TIGR02166, Putative_dimethyl_sulfoxide_reductase_chain_YnfE, anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family	NA|206aa|down_3|NZ_CP047405.1_1776413_1777031_+	TIGR02951, anaerobic_dimethyl_sulfoxide_reductase_subunit_B, DMSO reductase, iron-sulfur subunit	NA|285aa|down_4|NZ_CP047405.1_1777032_1777887_+	pfam04976, DmsC, DMSO reductase anchor subunit (DmsC)	NA|205aa|down_5|NZ_CP047405.1_1777929_1778544_+	PRK11621, PRK11621, Tat proofreading chaperone DmsD	NA|431aa|down_6|NZ_CP047405.1_1778703_1779996_+	PRK01610, PRK01610, putative voltage-gated ClC-type chloride channel ClcB; Provisional	NA|232aa|down_7|NZ_CP047405.1_1779948_1780644_-	PRK12374, PRK12374, ATP-dependent dethiobiotin synthetase BioD	NA|407aa|down_8|NZ_CP047405.1_1780768_1781989_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|298aa|down_9|NZ_CP047405.1_1782123_1783017_-	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold
GCF_013317085.1_ASM1331708v1	NZ_CP047405	Escherichia coli strain MS6193 chromosome, complete genome	4	3055993-3056508	4,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,8,7	8	TypeI-E	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA,NA	NA|254aa|up_9|NZ_CP047405.1_3047805_3048567_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP047405.1_3048547_3049597_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP047405.1_3049593_3050073_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP047405.1_3050072_3050783_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP047405.1_3050801_3051113_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP047405.1_3051306_3051630_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP047405.1_3051679_3052285_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP047405.1_3052284_3053712_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP047405.1_3053713_3054622_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP047405.1_3054873_3055911_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP047405.1_3056604_3056898_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NZ_CP047405.1_3056894_3057818_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP047405.1_3057814_3058465_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP047405.1_3058446_3059193_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP047405.1_3059203_3060259_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP047405.1_3060270_3060807_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_6|NZ_CP047405.1_3060803_3062366_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP047405.1_3062463_3065163_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP047405.1_3065356_3065509_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP047405.1_3065773_3066508_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_013317085.1_ASM1331708v1	NZ_CP047405	Escherichia coli strain MS6193 chromosome, complete genome	5	3082208-3083456	5,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	20,20,19	20	Unclear	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA,NA|47aa|down_1|NZ_CP047405.1_3084605_3084746_+	NA|424aa|up_9|NZ_CP047405.1_3070851_3072123_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP047405.1_3072113_3072374_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP047405.1_3072390_3072966_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP047405.1_3073113_3073974_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP047405.1_3073970_3074750_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_CP047405.1_3074727_3076137_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP047405.1_3076158_3077613_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP047405.1_3077682_3078468_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP047405.1_3078786_3080064_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP047405.1_3080090_3081569_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP047405.1_3083795_3084467_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP047405.1_3084605_3084746_+	NA	NA|291aa|down_2|NZ_CP047405.1_3084759_3085632_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP047405.1_3085691_3086990_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP047405.1_3087077_3088715_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP047405.1_3088942_3089734_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP047405.1_3089804_3090140_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP047405.1_3090139_3090388_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP047405.1_3090465_3092700_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP047405.1_3092747_3094049_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
