assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013315735.1_ASM1331573v1	NZ_CP054368	Escherichia coli strain SCU-115 chromosome, complete genome	1	629599-629722	1	CRISPRCasFinder	no	DEDDh	DEDDh,c2c9_V-U4,DinG,cas3,WYL,csa3,RT	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,DinG,cas3,WYL,csa3,RT	NA,NA|30aa|down_7|NZ_CP054368.1_638618_638708_+	NA|471aa|up_9|NZ_CP054368.1_619051_620464_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP054368.1_621020_621230_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP054368.1_621685_622312_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP054368.1_622332_624435_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP054368.1_624447_625086_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP054368.1_625149_625818_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP054368.1_625814_626600_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP054368.1_626603_627416_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP054368.1_627427_629032_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP054368.1_629157_629463_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP054368.1_630036_631293_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP054368.1_631333_632707_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP054368.1_632921_633563_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP054368.1_633602_634751_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP054368.1_635041_636253_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP054368.1_636365_637298_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP054368.1_637294_638320_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP054368.1_638618_638708_+	NA	NA|390aa|down_8|NZ_CP054368.1_638873_640043_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP054368.1_640188_640770_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_013315735.1_ASM1331573v1	NZ_CP054368	Escherichia coli strain SCU-115 chromosome, complete genome	2	1207089-1207180	2	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,DinG,cas3,WYL,csa3,RT	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,DinG,cas3,WYL,csa3,RT	NA|70aa|up_9|NZ_CP054368.1_1196339_1196549_-,NA	NA|70aa|up_9|NZ_CP054368.1_1196339_1196549_-	NA	NA|1321aa|up_8|NZ_CP054368.1_1196603_1200566_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP054368.1_1200605_1201244_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP054368.1_1201531_1202623_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP054368.1_1202622_1203315_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP054368.1_1203326_1203713_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP054368.1_1203720_1204521_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP054368.1_1204530_1205121_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP054368.1_1205131_1205626_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP054368.1_1205646_1206975_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP054368.1_1207603_1208200_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP054368.1_1208220_1208448_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP054368.1_1208485_1209727_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|307aa|down_3|NZ_CP054368.1_1210261_1211182_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_4|NZ_CP054368.1_1211181_1211487_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_5|NZ_CP054368.1_1211741_1212341_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_6|NZ_CP054368.1_1212337_1214884_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_7|NZ_CP054368.1_1214883_1216056_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_8|NZ_CP054368.1_1216185_1216878_+	PRK10766, PRK10766, two-component system response regulator TorR	NA|343aa|down_9|NZ_CP054368.1_1216850_1217879_-	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional
GCF_013315735.1_ASM1331573v1	NZ_CP054368	Escherichia coli strain SCU-115 chromosome, complete genome	3	1328841-1328923	3	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,DinG,cas3,WYL,csa3,RT	Orphan	ATCTGCCTGTACGGCAGTGAACT	23	0	0	NA	NA	I-F	1	1	Orphan	DEDDh,c2c9_V-U4,DinG,cas3,WYL,csa3,RT	NA,NA	NA|431aa|up_9|NZ_CP054368.1_1313823_1315116_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP054368.1_1315206_1316550_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP054368.1_1316560_1317172_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1374aa|up_6|NZ_CP054368.1_1317330_1321452_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP054368.1_1321586_1322081_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP054368.1_1322624_1323590_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP054368.1_1323712_1325479_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP054368.1_1325479_1327201_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP054368.1_1327242_1327947_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP054368.1_1328231_1328450_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_CP054368.1_1329135_1331412_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP054368.1_1331442_1331763_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP054368.1_1332085_1332310_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP054368.1_1332382_1334329_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP054368.1_1334325_1335441_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_CP054368.1_1335591_1336548_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP054368.1_1336544_1338203_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP054368.1_1338627_1339323_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP054368.1_1339642_1340542_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP054368.1_1340685_1342338_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_013315735.1_ASM1331573v1	NZ_CP054368	Escherichia coli strain SCU-115 chromosome, complete genome	4	2198825-2198957	1	PILER-CR	no		DEDDh,c2c9_V-U4,DinG,cas3,WYL,csa3,RT	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	DEDDh,c2c9_V-U4,DinG,cas3,WYL,csa3,RT	NA,NA	NA|105aa|up_9|NZ_CP054368.1_2190196_2190511_-	pfam01845, CcdB, CcdB protein	NA|78aa|up_8|NZ_CP054368.1_2190513_2190747_-	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]	NA|160aa|up_7|NZ_CP054368.1_2190832_2191312_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP054368.1_2191503_2193366_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP054368.1_2193358_2193889_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP054368.1_2193996_2195328_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP054368.1_2195386_2195674_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP054368.1_2195670_2196957_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP054368.1_2197007_2197949_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP054368.1_2197963_2198734_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP054368.1_2199205_2200720_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP054368.1_2200750_2201893_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP054368.1_2202021_2203239_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP054368.1_2203311_2204865_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP054368.1_2204973_2205759_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP054368.1_2205764_2206355_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP054368.1_2206473_2206869_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP054368.1_2207129_2210351_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP054368.1_2210368_2211517_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP054368.1_2211973_2212795_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_013315735.1_ASM1331573v1	NZ_CP054368	Escherichia coli strain SCU-115 chromosome, complete genome	5	2400048-2400187	4	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,DinG,cas3,WYL,csa3,RT	Orphan	TGTTATTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACACA	44	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,DinG,cas3,WYL,csa3,RT	NA,NA	NA|464aa|up_9|NZ_CP054368.1_2383479_2384871_+	cd17260, RMtype1_S_EcoEI-TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S	NA|398aa|up_8|NZ_CP054368.1_2384863_2386057_+	pfam14088, DUF4268, Domain of unknown function (DUF4268)	NA|1045aa|up_7|NZ_CP054368.1_2386072_2389207_+	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	NA|293aa|up_6|NZ_CP054368.1_2390455_2391334_-	COG3440, COG3440, Predicted restriction endonuclease [Defense mechanisms]	NA|423aa|up_5|NZ_CP054368.1_2391542_2392811_-	PRK09692, PRK09692, integrase; Provisional	NA|340aa|up_4|NZ_CP054368.1_2393291_2394311_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|501aa|up_3|NZ_CP054368.1_2394440_2395943_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP054368.1_2396070_2397153_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP054368.1_2397152_2398253_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP054368.1_2398519_2400031_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP054368.1_2400288_2400732_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP054368.1_2400731_2403587_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|396aa|down_2|NZ_CP054368.1_2403633_2404821_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP054368.1_2405013_2405517_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP054368.1_2405694_2406111_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|NZ_CP054368.1_2406272_2407277_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|151aa|down_6|NZ_CP054368.1_2407321_2407774_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|407aa|down_7|NZ_CP054368.1_2408451_2409672_+	PRK01388, PRK01388, arginine deiminase; Provisional	NA|311aa|down_8|NZ_CP054368.1_2409682_2410615_+	PRK12354, PRK12354, carbamate kinase; Reviewed	NA|335aa|down_9|NZ_CP054368.1_2410638_2411643_+	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated
GCF_013315735.1_ASM1331573v1	NZ_CP054368	Escherichia coli strain SCU-115 chromosome, complete genome	6	2951807-2951940	5	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,DinG,cas3,WYL,csa3,RT	Orphan	ACGGTTCAGAACTTTTGTAGGCCCGATAAGACGCGGCAGCGT	42	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,DinG,cas3,WYL,csa3,RT	NA,NA	NA|329aa|up_9|NZ_CP054368.1_2936138_2937125_-	PRK11768, PRK11768, serine/threonine protein kinase	NA|90aa|up_8|NZ_CP054368.1_2937201_2937471_-	pfam06288, DUF1040, Protein of unknown function (DUF1040)	NA|195aa|up_7|NZ_CP054368.1_2937540_2938125_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|176aa|up_6|NZ_CP054368.1_2938106_2938634_+	PRK10751, PRK10751, molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional	NA|182aa|up_5|NZ_CP054368.1_2944223_2944769_-	PRK11104, hemG, menaquinone-dependent protoporphyrinogen IX dehydrogenase	NA|484aa|up_4|NZ_CP054368.1_2944780_2946232_-	PRK10750, PRK10750, Trk system potassium transporter TrkH	NA|205aa|up_3|NZ_CP054368.1_2946270_2946885_-	PRK11568, PRK11568, IMPACT family protein	NA|444aa|up_2|NZ_CP054368.1_2946884_2948216_-	PRK13607, PRK13607, proline dipeptidase; Provisional	NA|730aa|up_1|NZ_CP054368.1_2948405_2950595_+	PRK11730, fadB, fatty acid oxidation complex subunit alpha FadB	NA|388aa|up_0|NZ_CP054368.1_2950604_2951768_+	PRK08947, fadA, 3-ketoacyl-CoA thiolase; Reviewed	NA|234aa|down_0|NZ_CP054368.1_2952040_2952742_-	PRK08051, fre, FMN reductase; Validated	NA|498aa|down_1|NZ_CP054368.1_2952787_2954281_-	PRK10922, PRK10922, 4-hydroxy-3-polyprenylbenzoate decarboxylase	NA|163aa|down_2|NZ_CP054368.1_2954447_2954936_+	PRK09014, rfaH, transcription/translation regulatory transformer protein RfaH	NA|261aa|down_3|NZ_CP054368.1_2954932_2955715_-	PRK10425, PRK10425, 3'-5' ssDNA/RNA exonuclease TatD	NA|259aa|down_4|NZ_CP054368.1_2955756_2956533_-	PRK10921, PRK10921, Sec-independent protein translocase subunit TatC	NA|172aa|down_5|NZ_CP054368.1_2956535_2957051_-	PRK01770, PRK01770, Sec-independent protein translocase subunit TatB	NA|90aa|down_6|NZ_CP054368.1_2957054_2957324_-	PRK03554, tatA, Sec-independent protein translocase subunit TatA	NA|547aa|down_7|NZ_CP054368.1_2957402_2959043_-	PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB; Reviewed	NA|202aa|down_8|NZ_CP054368.1_2959039_2959645_-	COG3165, COG3165, Uncharacterized protein conserved in bacteria [Function unknown]	NA|252aa|down_9|NZ_CP054368.1_2959658_2960414_-	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE
