assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013315675.1_ASM1331567v1	NZ_CP054345	Escherichia coli strain SCU-176 chromosome, complete genome	1	1266292-1266405	1	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,cas14j,WYL	Orphan	TGCCGGATGCGCTTCGCTTATCCGGCCTACAAA	33	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,cas14j,WYL	NA,NA	NA|74aa|up_9|NZ_CP054345.1_1255861_1256083_-	PRK09956, PRK09956, ISNCY family transposase	NA|304aa|up_8|NZ_CP054345.1_1256095_1257007_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP054345.1_1257199_1258390_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP054345.1_1258386_1259646_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP054345.1_1259635_1261264_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP054345.1_1261536_1262895_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP054345.1_1262899_1263976_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP054345.1_1264178_1264829_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP054345.1_1264882_1265137_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP054345.1_1265136_1266267_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP054345.1_1266456_1268742_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1253aa|down_1|NZ_CP054345.1_1269423_1273182_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP054345.1_1273321_1274044_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP054345.1_1274190_1276818_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP054345.1_1276966_1278655_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP054345.1_1278651_1279275_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_CP054345.1_1279418_1283813_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_CP054345.1_1283813_1285463_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_CP054345.1_1285467_1286244_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_CP054345.1_1286317_1287502_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_013315675.1_ASM1331567v1	NZ_CP054345	Escherichia coli strain SCU-176 chromosome, complete genome	2	1964369-1964492	2	CRISPRCasFinder	no	DEDDh	csa3,cas3,DEDDh,DinG,cas14j,WYL	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,cas14j,WYL	NA,NA|30aa|down_7|NZ_CP054345.1_1973389_1973479_+	NA|471aa|up_9|NZ_CP054345.1_1953821_1955234_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP054345.1_1955790_1956000_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP054345.1_1956455_1957082_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP054345.1_1957102_1959205_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP054345.1_1959217_1959856_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP054345.1_1959919_1960588_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP054345.1_1960584_1961370_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP054345.1_1961373_1962186_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP054345.1_1962197_1963802_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP054345.1_1963927_1964233_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP054345.1_1964807_1966064_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP054345.1_1966104_1967478_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP054345.1_1967692_1968334_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP054345.1_1968373_1969522_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP054345.1_1969812_1971024_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP054345.1_1971136_1972069_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP054345.1_1972065_1973091_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP054345.1_1973389_1973479_+	NA	NA|390aa|down_8|NZ_CP054345.1_1973644_1974814_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP054345.1_1974959_1975541_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_013315675.1_ASM1331567v1	NZ_CP054345	Escherichia coli strain SCU-176 chromosome, complete genome	3	2726843-2726993	3,1	CRISPRCasFinder,PILER-CR	no		csa3,cas3,DEDDh,DinG,cas14j,WYL	Orphan	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAACTCA	28,31	0	0	NA	NA	I-F:I-F	2,2	2	Orphan	csa3,cas3,DEDDh,DinG,cas14j,WYL	NA,NA	NA|431aa|up_9|NZ_CP054345.1_2711964_2713257_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP054345.1_2713347_2714691_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP054345.1_2714701_2715313_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1330aa|up_6|NZ_CP054345.1_2715471_2719461_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP054345.1_2719595_2720090_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP054345.1_2720633_2721599_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP054345.1_2721721_2723488_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP054345.1_2723488_2725210_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP054345.1_2725251_2725956_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP054345.1_2726240_2726459_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_CP054345.1_2727202_2729479_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP054345.1_2729509_2729830_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP054345.1_2730152_2730377_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP054345.1_2730449_2732396_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP054345.1_2732392_2733508_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_CP054345.1_2733658_2734615_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP054345.1_2734611_2736270_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP054345.1_2736695_2737391_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP054345.1_2737711_2738611_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP054345.1_2738754_2740407_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_013315675.1_ASM1331567v1	NZ_CP054345	Escherichia coli strain SCU-176 chromosome, complete genome	4	3649834-3649966	2	PILER-CR	no		csa3,cas3,DEDDh,DinG,cas14j,WYL	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,DEDDh,DinG,cas14j,WYL	NA,NA	NA|105aa|up_9|NZ_CP054345.1_3641205_3641520_-	pfam01845, CcdB, CcdB protein	NA|78aa|up_8|NZ_CP054345.1_3641522_3641756_-	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]	NA|160aa|up_7|NZ_CP054345.1_3641841_3642321_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP054345.1_3642512_3644375_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP054345.1_3644367_3644898_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP054345.1_3645005_3646337_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP054345.1_3646395_3646683_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP054345.1_3646679_3647966_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP054345.1_3648016_3648958_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP054345.1_3648972_3649743_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP054345.1_3650215_3651730_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP054345.1_3651760_3652903_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP054345.1_3653020_3654238_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP054345.1_3654310_3655864_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP054345.1_3655972_3656758_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP054345.1_3656763_3657354_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP054345.1_3657472_3657868_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1073aa|down_7|NZ_CP054345.1_3658128_3661347_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP054345.1_3661364_3662513_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP054345.1_3662968_3663790_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_013315675.1_ASM1331567v1	NZ_CP054345	Escherichia coli strain SCU-176 chromosome, complete genome	5	4940069-4940201	4	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,cas14j,WYL	Orphan	ACGCTGCCGCGTCTTATCGGGCCTACAAAAGTTCTGAACCGT	42	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,cas14j,WYL	NA,NA	NA|252aa|up_9|NZ_CP054345.1_4931594_4932350_+	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA|202aa|up_8|NZ_CP054345.1_4932363_4932969_+	COG3165, COG3165, Uncharacterized protein conserved in bacteria [Function unknown]	NA|547aa|up_7|NZ_CP054345.1_4932965_4934606_+	PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB; Reviewed	NA|90aa|up_6|NZ_CP054345.1_4934684_4934954_+	PRK03554, tatA, Sec-independent protein translocase subunit TatA	NA|172aa|up_5|NZ_CP054345.1_4934957_4935473_+	PRK01770, PRK01770, Sec-independent protein translocase subunit TatB	NA|259aa|up_4|NZ_CP054345.1_4935475_4936252_+	PRK10921, PRK10921, Sec-independent protein translocase subunit TatC	NA|261aa|up_3|NZ_CP054345.1_4936293_4937076_+	PRK10425, PRK10425, 3'-5' ssDNA/RNA exonuclease TatD	NA|163aa|up_2|NZ_CP054345.1_4937072_4937561_-	PRK09014, rfaH, transcription/translation regulatory transformer protein RfaH	NA|498aa|up_1|NZ_CP054345.1_4937727_4939221_+	PRK10922, PRK10922, 4-hydroxy-3-polyprenylbenzoate decarboxylase	NA|234aa|up_0|NZ_CP054345.1_4939266_4939968_+	PRK08051, fre, FMN reductase; Validated	NA|388aa|down_0|NZ_CP054345.1_4940239_4941403_-	PRK08947, fadA, 3-ketoacyl-CoA thiolase; Reviewed	NA|730aa|down_1|NZ_CP054345.1_4941412_4943602_-	PRK11730, fadB, fatty acid oxidation complex subunit alpha FadB	NA|444aa|down_2|NZ_CP054345.1_4943791_4945123_+	PRK13607, PRK13607, proline dipeptidase; Provisional	NA|205aa|down_3|NZ_CP054345.1_4945122_4945737_+	PRK11568, PRK11568, IMPACT family protein	NA|484aa|down_4|NZ_CP054345.1_4945775_4947227_+	PRK10750, PRK10750, Trk system potassium transporter TrkH	NA|182aa|down_5|NZ_CP054345.1_4947238_4947784_+	PRK11104, hemG, menaquinone-dependent protoporphyrinogen IX dehydrogenase	NA|176aa|down_6|NZ_CP054345.1_4953274_4953802_-	PRK10751, PRK10751, molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional	NA|195aa|down_7|NZ_CP054345.1_4953783_4954368_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|90aa|down_8|NZ_CP054345.1_4954437_4954707_+	pfam06288, DUF1040, Protein of unknown function (DUF1040)	NA|329aa|down_9|NZ_CP054345.1_4954783_4955770_+	PRK11768, PRK11768, serine/threonine protein kinase
